Lag0036382.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0036382.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Integrase catalytic domain-containing protein
Location	chr3: 45457959 .. 45458513 (+)
Sequence length	555
RNA-Seq Expression	Lag0036382.1
Synteny	Lag0036382.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTCGAGTGCCGACAGAAGAGACAAGAGCCAGTATTGCCTTTTCCACCGGGACCATGGGCATTCAACCAGGAATTGTATTCAGTTGAAGGATGAAATCGAAGCACTGATCCAGAATGGGTATTTGAAAGAGTTCGTCGGTGAGCCCAGGGCCGAGGCCAACCACGGATGGTCGAGGTCGAGCCTGACCAAAGATGGCCGAGACAAAGAAGAACCCCTACGAGAGATCAGAACCATCTTTGGAGGACCAGCTGGAGGAGGTTCAAGCAGGAAGAGGAAAACTATTGCCAGGGAAGCAAGGTCTGAAGCAGAATATCGAGGTATGTACTCTGTCCATCTAGCAAAGGCACACCCCTCTTTGGAGTTCACTGAGGCTGAGGCAACAAGCATTCATCAGCCACATAATGATGCCCTAGTGGTCACTCTAGTTATAGTCAATGTGAAAATCCATCGGATCCTAATTGATGGAGGAAGCTCGGCTGATGTCCTTTCTCTAGCGGCCTTTAAAGCAATGCAGTTAGAGAGGGAACTCTTAAAGCCACCCCACTTGTAG

mRNA sequence

ATGAAGTCGAGTGCCGACAGAAGAGACAAGAGCCAGTATTGCCTTTTCCACCGGGACCATGGGCATTCAACCAGGAATTGTATTCAGTTGAAGGATGAAATCGAAGCACTGATCCAGAATGGGTATTTGAAAGAGTTCGTCGGTGAGCCCAGGGCCGAGGCCAACCACGGATGGTCGAGGTCGAGCCTGACCAAAGATGGCCGAGACAAAGAAGAACCCCTACGAGAGATCAGAACCATCTTTGGAGGACCAGCTGGAGGAGGTTCAAGCAGGAAGAGGAAAACTATTGCCAGGGAAGCAAGGTCTGAAGCAGAATATCGAGGTATGTACTCTGTCCATCTAGCAAAGGCACACCCCTCTTTGGAGTTCACTGAGGCTGAGGCAACAAGCATTCATCAGCCACATAATGATGCCCTAGTGGTCACTCTAGTTATAGTCAATGTGAAAATCCATCGGATCCTAATTGATGGAGGAAGCTCGGCTGATGTCCTTTCTCTAGCGGCCTTTAAAGCAATGCAGTTAGAGAGGGAACTCTTAAAGCCACCCCACTTGTAG

Coding sequence (CDS)

ATGAAGTCGAGTGCCGACAGAAGAGACAAGAGCCAGTATTGCCTTTTCCACCGGGACCATGGGCATTCAACCAGGAATTGTATTCAGTTGAAGGATGAAATCGAAGCACTGATCCAGAATGGGTATTTGAAAGAGTTCGTCGGTGAGCCCAGGGCCGAGGCCAACCACGGATGGTCGAGGTCGAGCCTGACCAAAGATGGCCGAGACAAAGAAGAACCCCTACGAGAGATCAGAACCATCTTTGGAGGACCAGCTGGAGGAGGTTCAAGCAGGAAGAGGAAAACTATTGCCAGGGAAGCAAGGTCTGAAGCAGAATATCGAGGTATGTACTCTGTCCATCTAGCAAAGGCACACCCCTCTTTGGAGTTCACTGAGGCTGAGGCAACAAGCATTCATCAGCCACATAATGATGCCCTAGTGGTCACTCTAGTTATAGTCAATGTGAAAATCCATCGGATCCTAATTGATGGAGGAAGCTCGGCTGATGTCCTTTCTCTAGCGGCCTTTAAAGCAATGCAGTTAGAGAGGGAACTCTTAAAGCCACCCCACTTGTAG

Protein sequence

MKSSADRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRAEANHGWSRSSLTKDGRDKEEPLREIRTIFGGPAGGGSSRKRKTIAREARSEAEYRGMYSVHLAKAHPSLEFTEAEATSIHQPHNDALVVTLVIVNVKIHRILIDGGSSADVLSLAAFKAMQLERELLKPPHL

Homology

[Close]

BLAST of Lag0036382.1 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 182.6 bits (462), Expect = 3.1e-42
Identity = 91/180 (50.56%), Postives = 122/180 (67.78%), Query Frame = 0


Query: 1   MKSSADRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRAEANHGWSR 60
           MK+S+ +R K +YCLFHRDHGH+T++C  LK+E+E LI+ GYLKE+V EP+A        
Sbjct: 425 MKASSAKRSKGRYCLFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEEPKA-------- 484

Query: 61  SSLTKDGRDKEEPLREIRTIFGGPAGGGSSRKRKTIAREARSEAEYRGMYSVHLAKAHPS 120
              T++G   + P REIRTI GGP    S RKRK   REAR+  E   +Y  +      +
Sbjct: 485 ---TQNGESDKSPAREIRTIMGGPIERESGRKRKADVREARTSREQNEVYHAYTTNRPVT 544

Query: 121 LEFTEAEATSIHQPHNDALVVTLVIVNVKIHRILIDGGSSADVLSLAAFKAMQLERELLK 180
           +EF+E EAT +  PHNDALV+ L I NVK+HR+L+DGGSSAD++S  A+KAM L  ++LK
Sbjct: 545 IEFSEDEATHLLHPHNDALVIXLKIANVKVHRVLVDGGSSADIJSWTAYKAMDLXEKVLK 593

[Close]

BLAST of Lag0036382.1 vs. NCBI nr
Match: XP_022155902.1 (uncharacterized protein LOC111022905 [Momordica charantia])

HSP 1 Score: 168.7 bits (426), Expect = 4.7e-38
Identity = 83/180 (46.11%), Postives = 122/180 (67.78%), Query Frame = 0


Query: 1   MKSSADRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRAEANHGWSR 60
           MK+ + +R K +Y LFHRDHGH+T++C  LK+E+E LI+ GYLKE+V +P+         
Sbjct: 1   MKAPSTKRSKGRYWLFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEDPK--------- 60

Query: 61  SSLTKDGRDKEEPLREIRTIFGGPAGGGSSRKRKTIAREARSEAEYRGMYSVHLAKAHPS 120
             +T++G + + P REI+TI GGP    S RK K   REAR+   +  +Y  ++A    +
Sbjct: 61  --VTQNGENDKSPAREIQTIMGGPIESESGRKIKVDVREARTNLGHNEVYYTYIADRSAT 120

Query: 121 LEFTEAEATSIHQPHNDALVVTLVIVNVKIHRILIDGGSSADVLSLAAFKAMQLERELLK 180
           +EF++ EAT +  PHNDALV+TL I NVK+HRIL+DGG+SAD++S  A+K M +  ++LK
Sbjct: 121 IEFSKDEATHLLHPHNDALVITLKIANVKVHRILVDGGNSADIISWTAYKVMDVGEKVLK 169

[Close]

BLAST of Lag0036382.1 vs. NCBI nr
Match: XP_022158827.1 (uncharacterized protein LOC111025291 [Momordica charantia])

HSP 1 Score: 167.9 bits (424), Expect = 8.0e-38
Identity = 84/180 (46.67%), Postives = 118/180 (65.56%), Query Frame = 0


Query: 1   MKSSADRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRAEANHGWSR 60
           MK  + + +K +YCLFHRDHGH+T++C  LK+E+E L + GYLKE+V + +A        
Sbjct: 1   MKDPSTKLNKGRYCLFHRDHGHATQDCFDLKEEVEGLFRRGYLKEYVEDSKA-------- 60

Query: 61  SSLTKDGRDKEEPLREIRTIFGGPAGGGSSRKRKTIAREARSEAEYRGMYSVHLAKAHPS 120
              T++  + + P REIRTI GGP    S RKRK   REA++      +Y  ++     +
Sbjct: 61  ---TQNSENDKSPAREIRTIMGGPIERESGRKRKADVREAKASLGQNEVYHAYIMNQSVA 120

Query: 121 LEFTEAEATSIHQPHNDALVVTLVIVNVKIHRILIDGGSSADVLSLAAFKAMQLERELLK 180
           +EF+E EAT +  PHNDALV+TL I N K+HRIL+DGGSSAD++S  A+KAM L  ++LK
Sbjct: 121 IEFSEDEATHLLHPHNDALVITLKIANXKVHRILVDGGSSADIISWTAYKAMDLGEKVLK 169

[Close]

BLAST of Lag0036382.1 vs. NCBI nr
Match: XP_022158828.1 (uncharacterized protein LOC111025292 [Momordica charantia])

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-37
Identity = 84/180 (46.67%), Postives = 117/180 (65.00%), Query Frame = 0


Query: 1   MKSSADRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRAEANHGWSR 60
           MK  + +  K +YCLFHRDHGH+T++C  LK+E+E L + GYLKE+V + +A        
Sbjct: 1   MKDPSTKLXKGRYCLFHRDHGHATQDCFDLKEEVEGLFRRGYLKEYVEDSKA-------- 60

Query: 61  SSLTKDGRDKEEPLREIRTIFGGPAGGGSSRKRKTIAREARSEAEYRGMYSVHLAKAHPS 120
              T++  + + P REIRTI GGP    S RKRK   REA++      +Y  ++     +
Sbjct: 61  ---TQNSENDKSPAREIRTIMGGPIERESGRKRKADVREAKASLGQNEVYHAYIMNQSVA 120

Query: 121 LEFTEAEATSIHQPHNDALVVTLVIVNVKIHRILIDGGSSADVLSLAAFKAMQLERELLK 180
           +EF+E EAT +  PHNDALV+TL I N K+HRIL+DGGSSAD++S  A+KAM L  ++LK
Sbjct: 121 IEFSEDEATHLLHPHNDALVITLKIANXKVHRILVDGGSSADIISWTAYKAMDLGEKVLK 169

[Close]

BLAST of Lag0036382.1 vs. NCBI nr
Match: XP_022158621.1 (uncharacterized protein LOC111025072 [Momordica charantia])

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-37
Identity = 83/180 (46.11%), Postives = 117/180 (65.00%), Query Frame = 0


Query: 1   MKSSADRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRAEANHGWSR 60
           MK+ + +R K +YCLFHRDHGH+T++C  L +E+E LI+ GYL+E+V EP+A        
Sbjct: 15  MKAPSTKRSKGRYCLFHRDHGHATQDCFDLNEEVEGLIRRGYLEEYVEEPKA-------- 74

Query: 61  SSLTKDGRDKEEPLREIRTIFGGPAGGGSSRKRKTIAREARSEAEYRGMYSVHLAKAHPS 120
              T++G   + P REIRTI GGP    S RKRK   +EAR+  E   +Y  +      +
Sbjct: 75  ---TQNGESDKSPAREIRTIMGGPIERESGRKRKADVQEARANREQNEVYHAYTTNRPVT 134

Query: 121 LEFTEAEATSIHQPHNDALVVTLVIVNVKIHRILIDGGSSADVLSLAAFKAMQLERELLK 180
           ++F+E EAT +  PHNDAL +TL I NVK+HRIL+DGG+ AD++S  A+  M L  ++LK
Sbjct: 135 IQFSEDEATHLLHPHNDALDITLKIANVKVHRILVDGGNLADIISWTAYNVMDLGEKVLK 183

The following BLAST results are available for this feature:

BLAST of Lag0036382.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158830.1	3.1e-42	50.56	uncharacterized protein LOC111025293 [Momordica charantia]	[more]
XP_022155902.1	4.7e-38	46.11	uncharacterized protein LOC111022905 [Momordica charantia]	[more]
XP_022158827.1	8.0e-38	46.67	uncharacterized protein LOC111025291 [Momordica charantia]	[more]
XP_022158828.1	1.4e-37	46.67	uncharacterized protein LOC111025292 [Momordica charantia]	[more]
XP_022158621.1	1.4e-37	46.11	uncharacterized protein LOC111025072 [Momordica charantia]	[more]

BLAST of Lag0036382.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..77

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0036382	Lag0036382	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0036382.1.exon1	Lag0036382.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0036382.1	cds.Lag0036382.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0036382.1	Lag0036382.1-protein	polypeptide