Lag0032643.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0032643.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionglycine-rich cell wall structural protein 1-like
Locationchr11: 35579165 .. 35579533 (-)
Sequence length369
RNA-Seq ExpressionLag0032643.1
SyntenyLag0032643.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTATGCAATGCAGCAAACCAGGTGAAAAGAGCCAGCAACAGAAGCACGACCAACACCAACAGGACCATTGCTTTGGCCACATGTCCGACAAGATCAAAGGCGTCTTCAGAGGCCACCATCATGCCCAGCCTCCTGCGCCCAATGCCAACTGCGGTCAGTGCAAGCCAGGCCCTAAGAAGAGCGAACACCACAAGAATAAAGAAGGGGGTTTCTTGAACAAGATCAAGGATGCCTTCTCCGACCACAGCGACAGCAGCGACAGCGACGATGACGGTCACAAAGCCCACCACAAAAGGAAGGCAAGTGTTTTGTTTTTCTTCCTCTCTCAAGATTTGTTCAAACATTTCTCATATGGTTTTTAG

mRNA sequence

ATGGCGTCTATGCAATGCAGCAAACCAGGTGAAAAGAGCCAGCAACAGAAGCACGACCAACACCAACAGGACCATTGCTTTGGCCACATGTCCGACAAGATCAAAGGCGTCTTCAGAGGCCACCATCATGCCCAGCCTCCTGCGCCCAATGCCAACTGCGGTCAGTGCAAGCCAGGCCCTAAGAAGAGCGAACACCACAAGAATAAAGAAGGGGGTTTCTTGAACAAGATCAAGGATGCCTTCTCCGACCACAGCGACAGCAGCGACAGCGACGATGACGGTCACAAAGCCCACCACAAAAGGAAGGCAAGTGTTTTGTTTTTCTTCCTCTCTCAAGATTTGTTCAAACATTTCTCATATGGTTTTTAG

Coding sequence (CDS)

ATGGCGTCTATGCAATGCAGCAAACCAGGTGAAAAGAGCCAGCAACAGAAGCACGACCAACACCAACAGGACCATTGCTTTGGCCACATGTCCGACAAGATCAAAGGCGTCTTCAGAGGCCACCATCATGCCCAGCCTCCTGCGCCCAATGCCAACTGCGGTCAGTGCAAGCCAGGCCCTAAGAAGAGCGAACACCACAAGAATAAAGAAGGGGGTTTCTTGAACAAGATCAAGGATGCCTTCTCCGACCACAGCGACAGCAGCGACAGCGACGATGACGGTCACAAAGCCCACCACAAAAGGAAGGCAAGTGTTTTGTTTTTCTTCCTCTCTCAAGATTTGTTCAAACATTTCTCATATGGTTTTTAG

Protein sequence

MASMQCSKPGEKSQQQKHDQHQQDHCFGHMSDKIKGVFRGHHHAQPPAPNANCGQCKPGPKKSEHHKNKEGGFLNKIKDAFSDHSDSSDSDDDGHKAHHKRKASVLFFFLSQDLFKHFSYGF
Homology
BLAST of Lag0032643.1 vs. NCBI nr
Match: XP_038875375.1 (uncharacterized protein LOC120067846 [Benincasa hispida])

HSP 1 Score: 119.0 bits (297), Expect = 2.8e-23
Identity = 71/112 (63.39%), Postives = 82/112 (73.21%), Query Frame = 0

Query: 1   MASMQCSKPGEKSQQQKHDQHQQDHCF-GHMSDKIKGVFRGHHHAQPP---AP---NANC 60
           MAS+QC+KP +   QQKHDQ Q  HCF GH+SDKIKGVF+GHHH Q P   AP   +AN 
Sbjct: 1   MASLQCNKPAD-HDQQKHDQ-QHHHCFGGHVSDKIKGVFKGHHHGQAPLASAPVHHSANA 60

Query: 61  GQCKP--GPKKSEHHKNKEGGFLNKIKDAFSDH-SDSSDSDDDGHKAHHKRK 103
             CKP    KK EHHKNKEGG L+KIKDAFSDH SDSSDS+++  K HH +K
Sbjct: 61  SHCKPTGSKKKKEHHKNKEGGLLHKIKDAFSDHSSDSSDSENECDKPHHNKK 110

BLAST of Lag0032643.1 vs. NCBI nr
Match: XP_022146004.1 (uncharacterized protein LOC111015315 [Momordica charantia])

HSP 1 Score: 111.7 bits (278), Expect = 4.5e-21
Identity = 70/114 (61.40%), Postives = 80/114 (70.18%), Query Frame = 0

Query: 1   MASMQCSKPGEK--SQQQKHDQHQQDHCFGHMSDKIKGVFRGH-HHAQPP--AP------ 60
           MAS+QCSKP ++  SQ QKHD   Q HCFGH+SDKIKGVF+GH HH Q P  AP      
Sbjct: 1   MASLQCSKPADQQHSQNQKHD---QGHCFGHVSDKIKGVFKGHGHHGQAPGAAPHHSTNV 60

Query: 61  NANCGQCKPGPKKSEHHKNKEGGFLNKIKDAFSDH-SDSSDSDDDGHKAHHKRK 103
           NAN        K+ E HKNK+G  L+KIKDAFSDH SDSSDSD++GHKAH K K
Sbjct: 61  NAN-ANASVSHKEKEQHKNKDGNLLHKIKDAFSDHSSDSSDSDNEGHKAHRKSK 110

BLAST of Lag0032643.1 vs. NCBI nr
Match: XP_008437383.1 (PREDICTED: uncharacterized protein LOC103482815 [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 5.2e-17
Identity = 64/116 (55.17%), Postives = 76/116 (65.52%), Query Frame = 0

Query: 1   MASMQCSKPGEKS---QQQKHDQHQQDHCF-GHMSDKIKGVF-RGHHHAQP-PAP----- 60
           MA  QC+KP + +    QQKHDQ    HCF GH+SDKIKGVF +GHHH Q  PA      
Sbjct: 1   MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60

Query: 61  NANCGQCK--PGPKKSEHHKNKEGGFLNKIKDAFSDH-SDSSDSDDDGHKAHHKRK 103
           +AN   CK     KK EH   KEGG L+KIK+AFSDH SDSSDS+++ HK HH +K
Sbjct: 61  SANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKK 116

BLAST of Lag0032643.1 vs. NCBI nr
Match: XP_022958513.1 (glycine-rich cell wall structural protein 1-like [Cucurbita moschata])

HSP 1 Score: 74.3 bits (181), Expect = 8.0e-10
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 43  HAQPPAPNANCGQCKP-GPKKSEHHKNKEGGFLNKIKDAFSDHSDSSDSDDDGHKAHH 100
           H QP +PN   G CK  G +K  HHKNKEGGFLNKIKDAFSDHSD+SDSDDD  +  H
Sbjct: 473 HCQPASPNV--GHCKAGGSRKKGHHKNKEGGFLNKIKDAFSDHSDNSDSDDDCRRGRH 528

BLAST of Lag0032643.1 vs. NCBI nr
Match: KAA0042689.1 (uncharacterized protein E6C27_scaffold44G001870 [Cucumis melo var. makuwa] >TYK06092.1 uncharacterized protein E5676_scaffold376G001930 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 9.1e-06
Identity = 43/84 (51.19%), Postives = 49/84 (58.33%), Query Frame = 0

Query: 1  MASMQCSKPGEKS---QQQKHDQHQQDHCF-GHMSDKIKGVF-RGHHHAQP-PAP----- 60
          MA  QC+KP + +    QQKHDQ    HCF GH+SDKIKGVF +GHHH Q  PA      
Sbjct: 1  MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60

Query: 61 NANCGQCK--PGPKKSEHHKNKEG 72
          +AN   CK     KK EH   KEG
Sbjct: 61 SANDSHCKGSGSKKKKEHQVKKEG 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038875375.12.8e-2363.39uncharacterized protein LOC120067846 [Benincasa hispida][more]
XP_022146004.14.5e-2161.40uncharacterized protein LOC111015315 [Momordica charantia][more]
XP_008437383.15.2e-1755.17PREDICTED: uncharacterized protein LOC103482815 [Cucumis melo][more]
XP_022958513.18.0e-1067.24glycine-rich cell wall structural protein 1-like [Cucurbita moschata][more]
KAA0042689.19.1e-0651.19uncharacterized protein E6C27_scaffold44G001870 [Cucumis melo var. makuwa] >TYK0... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..97

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0032643Lag0032643gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0032643.1.exon1Lag0032643.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0032643.1cds.Lag0032643.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0032643.1Lag0032643.1-proteinpolypeptide