Lag0029183.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029183.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	chalcone synthase-like
Location	chr8: 36168776 .. 36169171 (-)
Sequence length	396
RNA-Seq Expression	Lag0029183.1
Synteny	Lag0029183.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTGTTTGTACCAATTATCACGAAATATACCAAAATACGTTGGTGGAAACATTAAGAAATGCTTGGGTGATGCAATCCCAAGTGGGATCAATGAGTATAACTCGTTGTTCTATGCAATCCATCCAGGGGGTCGAGCAGTTCTTGATGAAATAGAGCAAAAGCTTGGGCTTGAAAAGGGCAAATTGGAAGTGAGTAGGTATGTGCTTCGTGAGTATGGTAATATGATGGGCTCAACTGTTGGATTTGTTTTAGATGAGACGAGGAAGAAGTCAATAAGAGAAGGAAAAAGCACTACAGGTGATGGATTAGAGTGTGGTGTGCTTGTGACTCTTGGACCTGGTCTCACTATAGAGACTCTCATATTGCAAAGTGTCCCTATAGCTCAAGTTTAA

mRNA sequence

ATGGGTTGTTTGTACCAATTATCACGAAATATACCAAAATACGTTGGTGGAAACATTAAGAAATGCTTGGGTGATGCAATCCCAAGTGGGATCAATGAGTATAACTCGTTGTTCTATGCAATCCATCCAGGGGGTCGAGCAGTTCTTGATGAAATAGAGCAAAAGCTTGGGCTTGAAAAGGGCAAATTGGAAGTGAGTAGGTATGTGCTTCGTGAGTATGGTAATATGATGGGCTCAACTGTTGGATTTGTTTTAGATGAGACGAGGAAGAAGTCAATAAGAGAAGGAAAAAGCACTACAGGTGATGGATTAGAGTGTGGTGTGCTTGTGACTCTTGGACCTGGTCTCACTATAGAGACTCTCATATTGCAAAGTGTCCCTATAGCTCAAGTTTAA

Coding sequence (CDS)

ATGGGTTGTTTGTACCAATTATCACGAAATATACCAAAATACGTTGGTGGAAACATTAAGAAATGCTTGGGTGATGCAATCCCAAGTGGGATCAATGAGTATAACTCGTTGTTCTATGCAATCCATCCAGGGGGTCGAGCAGTTCTTGATGAAATAGAGCAAAAGCTTGGGCTTGAAAAGGGCAAATTGGAAGTGAGTAGGTATGTGCTTCGTGAGTATGGTAATATGATGGGCTCAACTGTTGGATTTGTTTTAGATGAGACGAGGAAGAAGTCAATAAGAGAAGGAAAAAGCACTACAGGTGATGGATTAGAGTGTGGTGTGCTTGTGACTCTTGGACCTGGTCTCACTATAGAGACTCTCATATTGCAAAGTGTCCCTATAGCTCAAGTTTAA

Protein sequence

MGCLYQLSRNIPKYVGGNIKKCLGDAIPSGINEYNSLFYAIHPGGRAVLDEIEQKLGLEKGKLEVSRYVLREYGNMMGSTVGFVLDETRKKSIREGKSTTGDGLECGVLVTLGPGLTIETLILQSVPIAQV

Homology

[Close]

BLAST of Lag0029183.1 vs. NCBI nr
Match: XP_022141572.1 (chalcone synthase-like [Momordica charantia])

HSP 1 Score: 175.6 bits (444), Expect = 2.7e-40
Identity = 89/128 (69.53%), Postives = 101/128 (78.91%), Query Frame = 0


Query: 1   MGCLYQLSRNIPKYVGGNIKKCLGDAIPSGINEYNSLFYAIHPGGRAVLDEIEQKLGLEK 60
           MG +Y LSRNIPK++G NI+KCL  A      +YNSLFY IHPGGRA+LDEIE+ LGL +
Sbjct: 257 MGLVYHLSRNIPKHIGRNIEKCLAGA----ECDYNSLFYVIHPGGRAILDEIEKNLGLGE 316

Query: 61  GKLEVSRYVLREYGNMMGSTVGFVLDETRKKSIREGKSTTGDGLECGVLVTLGPGLTIET 120
            KLE SR VL EYGNM G TV FVLDE R KSIR+GKSTTG G +CGVL+  GPGLTIET
Sbjct: 317 AKLESSRQVLSEYGNMGGPTVVFVLDEMRNKSIRQGKSTTGHGFDCGVLMAFGPGLTIET 376

Query: 121 LILQSVPI 129
           LIL+SVPI
Sbjct: 377 LILKSVPI 380

[Close]

BLAST of Lag0029183.1 vs. NCBI nr
Match: XP_006473029.1 (chalcone synthase-like [Citrus sinensis])

HSP 1 Score: 163.7 bits (413), Expect = 1.1e-36
Identity = 81/129 (62.79%), Postives = 103/129 (79.84%), Query Frame = 0


Query: 1   MGCLYQLSRNIPKYVGGNIKKCLGDAI-PSGINEYNSLFYAIHPGGRAVLDEIEQKLGLE 60
           MG    LS+++P  VG NI+K L DA+ P GI+++NSLFY++HPGGRA+LD++E  LGL 
Sbjct: 264 MGMELYLSKDVPATVGKNIEKLLVDAVSPFGISDWNSLFYSVHPGGRAILDQVELNLGLG 323

Query: 61  KGKLEVSRYVLREYGNMMGSTVGFVLDETRKKSIREGKSTTGDGLECGVLVTLGPGLTIE 120
           K KL  SR+VL EYGNM GS+V F+LDE RKKS++E K+TTGDGLE GVL  +GPGLT+E
Sbjct: 324 KEKLRASRHVLSEYGNMGGSSVYFILDEIRKKSMQEAKATTGDGLEWGVLFAIGPGLTVE 383

Query: 121 TLILQSVPI 129
           T+IL SVPI
Sbjct: 384 TVILLSVPI 392

[Close]

BLAST of Lag0029183.1 vs. NCBI nr
Match: XP_006434306.1 (chalcone synthase [Citrus clementina] >ESR47546.1 hypothetical protein CICLE_v10001395mg [Citrus clementina])

HSP 1 Score: 162.9 bits (411), Expect = 1.8e-36
Identity = 81/129 (62.79%), Postives = 102/129 (79.07%), Query Frame = 0


Query: 1   MGCLYQLSRNIPKYVGGNIKKCLGDAI-PSGINEYNSLFYAIHPGGRAVLDEIEQKLGLE 60
           MG    LS+++P  VG NI+K L DA+ P GI+++NSLFY++HPGGRA+LD++E  LGL 
Sbjct: 264 MGMELYLSKDVPATVGKNIEKLLVDAVSPFGISDWNSLFYSVHPGGRAILDQVELNLGLG 323

Query: 61  KGKLEVSRYVLREYGNMMGSTVGFVLDETRKKSIREGKSTTGDGLECGVLVTLGPGLTIE 120
           K KL  SR+VL EYGNM GS+V F+LDE RKKS++E K TTGDGLE GVL  +GPGLT+E
Sbjct: 324 KEKLRASRHVLSEYGNMGGSSVYFILDEIRKKSMQEAKPTTGDGLEWGVLFAIGPGLTVE 383

Query: 121 TLILQSVPI 129
           T+IL SVPI
Sbjct: 384 TVILLSVPI 392

[Close]

BLAST of Lag0029183.1 vs. NCBI nr
Match: GAY52068.1 (hypothetical protein CUMW_139120, partial [Citrus unshiu])

HSP 1 Score: 162.9 bits (411), Expect = 1.8e-36
Identity = 81/129 (62.79%), Postives = 102/129 (79.07%), Query Frame = 0


Query: 1   MGCLYQLSRNIPKYVGGNIKKCLGDAI-PSGINEYNSLFYAIHPGGRAVLDEIEQKLGLE 60
           MG    LS+++P  VG NI+K L DA+ P GI+++NSLFY++HPGGRA+LD++E  LGL 
Sbjct: 277 MGMELYLSKDVPATVGKNIEKLLVDAVSPFGISDWNSLFYSVHPGGRAILDQVELNLGLG 336

Query: 61  KGKLEVSRYVLREYGNMMGSTVGFVLDETRKKSIREGKSTTGDGLECGVLVTLGPGLTIE 120
           K KL  SR+VL EYGNM GS+V F+LDE RKKS++E K TTGDGLE GVL  +GPGLT+E
Sbjct: 337 KEKLRASRHVLSEYGNMGGSSVYFILDEIRKKSMQEAKPTTGDGLEWGVLFAIGPGLTVE 396

Query: 121 TLILQSVPI 129
           T+IL SVPI
Sbjct: 397 TVILLSVPI 405

[Close]

BLAST of Lag0029183.1 vs. NCBI nr
Match: 3WD8_A (TypeIII polyketide synthases [Citrus x microcarpa] >3WD8_B TypeIII polyketide synthases [Citrus x microcarpa] >3WD8_C TypeIII polyketide synthases [Citrus x microcarpa] >3WD8_D TypeIII polyketide synthases [Citrus x microcarpa])

HSP 1 Score: 162.9 bits (411), Expect = 1.8e-36
Identity = 81/129 (62.79%), Postives = 102/129 (79.07%), Query Frame = 0


Query: 1   MGCLYQLSRNIPKYVGGNIKKCLGDAI-PSGINEYNSLFYAIHPGGRAVLDEIEQKLGLE 60
           MG    LS+++P  VG NI+K L DA+ P GI+++NSLFY++HPGGRA+LD++E  LGL 
Sbjct: 273 MGMELYLSKDVPATVGKNIEKLLVDAVSPFGISDWNSLFYSVHPGGRAILDQVELNLGLG 332

Query: 61  KGKLEVSRYVLREYGNMMGSTVGFVLDETRKKSIREGKSTTGDGLECGVLVTLGPGLTIE 120
           K KL  SR+VL EYGNM GS+V F+LDE RKKS++E K TTGDGLE GVL  +GPGLT+E
Sbjct: 333 KEKLRASRHVLSEYGNMGGSSVYFILDEIRKKSMQEAKPTTGDGLEWGVLFAIGPGLTVE 392

Query: 121 TLILQSVPI 129
           T+IL SVPI
Sbjct: 393 TVILLSVPI 401

[Close]

BLAST of Lag0029183.1 vs. ExPASy Swiss-Prot
Match: F1LKH9 (Polyketide synthase 5 OS=Cannabis sativa OX=3483 GN=PKSG5 PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 5.5e-36
Identity = 71/128 (55.47%), Postives = 99/128 (77.34%), Query Frame = 0


Query: 2   GCLYQLSRNIPKYVGGNIKKCLGDAI-PSGINEYNSLFYAIHPGGRAVLDEIEQKLGLEK 61
           G ++ L +++P  +  NI+KCL +A  P GI+++NS+F+  HPGG+A+LD++E+KL L+K
Sbjct: 256 GLIFDLHKDVPMLISNNIEKCLIEAFTPIGISDWNSIFWITHPGGKAILDKVEEKLHLKK 315

Query: 62  GKLEVSRYVLREYGNMMGSTVGFVLDETRKKSIREGKSTTGDGLECGVLVTLGPGLTIET 121
            K   SR+VL E+GNM  STV FV+DE RK+S+ EGKSTTGDG E GVL   GPGLT+ET
Sbjct: 316 EKFVDSRHVLSEHGNMSSSTVLFVMDELRKRSLEEGKSTTGDGFEWGVLFGFGPGLTVET 375

Query: 122 LILQSVPI 129
           ++L+SVPI
Sbjct: 376 VVLRSVPI 383

[Close]

BLAST of Lag0029183.1 vs. ExPASy Swiss-Prot
Match: P53416 (Bibenzyl synthase OS=Phalaenopsis sp. OX=36900 GN=BIBSY212 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.1e-35
Identity = 71/128 (55.47%), Postives = 97/128 (75.78%), Query Frame = 0


Query: 2   GCLYQLSRNIPKYVGGNIKKCLGDAI-PSGINEYNSLFYAIHPGGRAVLDEIEQKLGLEK 61
           G L  L R++P+ V  N+ KCL +A  P GI+++NS+F+  HPGGRA+LD++E+++GL+ 
Sbjct: 263 GLLATLHRDVPQIVSKNVGKCLEEAFTPFGISDWNSIFWVPHPGGRAILDQVEERVGLKP 322

Query: 62  GKLEVSRYVLREYGNMMGSTVGFVLDETRKKSIREGKSTTGDGLECGVLVTLGPGLTIET 121
            KL VSR+VL EYGNM    V F LDE RK+S  EGK+TTG+GLE GVL   GPGLT+ET
Sbjct: 323 EKLSVSRHVLAEYGNMSSVCVHFALDEMRKRSANEGKATTGEGLEWGVLFGFGPGLTVET 382

Query: 122 LILQSVPI 129
           ++L+SVP+
Sbjct: 383 VVLRSVPL 390

[Close]

BLAST of Lag0029183.1 vs. ExPASy Swiss-Prot
Match: F1LKH8 (Polyketide synthase 4 OS=Cannabis sativa OX=3483 GN=PKSG4 PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.7e-35
Identity = 69/128 (53.91%), Postives = 98/128 (76.56%), Query Frame = 0


Query: 2   GCLYQLSRNIPKYVGGNIKKCLGDAI-PSGINEYNSLFYAIHPGGRAVLDEIEQKLGLEK 61
           G ++ L +++P  +  NI+KCL +A  P GI+++NS+F+  HPGG+A+LD++E+KL L+K
Sbjct: 256 GLIFDLHKDVPMLISNNIEKCLIEAFTPIGISDWNSIFWITHPGGKAILDKVEEKLDLKK 315

Query: 62  GKLEVSRYVLREYGNMMGSTVGFVLDETRKKSIREGKSTTGDGLECGVLVTLGPGLTIET 121
            K   SR+VL E+GNM  STV FV+DE RK+S+ EGKSTTGDG E GVL   GPGLT+E 
Sbjct: 316 EKFVDSRHVLSEHGNMSSSTVLFVMDELRKRSLEEGKSTTGDGFEWGVLFGFGPGLTVER 375

Query: 122 LILQSVPI 129
           ++++SVPI
Sbjct: 376 VVVRSVPI 383

[Close]

BLAST of Lag0029183.1 vs. ExPASy Swiss-Prot
Match: Q94FV7 (Polyketide synthase BAS OS=Rheum palmatum OX=137221 GN=BAS PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.1e-35
Identity = 67/128 (52.34%), Postives = 96/128 (75.00%), Query Frame = 0


Query: 2   GCLYQLSRNIPKYVGGNIKKCLGDAI-PSGINEYNSLFYAIHPGGRAVLDEIEQKLGLEK 61
           G  + L + +P  +  NIK CL DA  P  I+++NSLF+  HPGG A+LD++  K+GLEK
Sbjct: 255 GLSFHLYKTVPTLISNNIKTCLSDAFTPLNISDWNSLFWIAHPGGPAILDQVTAKVGLEK 314

Query: 62  GKLEVSRYVLREYGNMMGSTVGFVLDETRKKSIREGKSTTGDGLECGVLVTLGPGLTIET 121
            KL+V+R VL++YGNM  +TV F++DE RKKS+  G++TTG+GLE GVL   GPG+T+ET
Sbjct: 315 EKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFGPGITVET 374

Query: 122 LILQSVPI 129
           ++L+SVP+
Sbjct: 375 VVLRSVPV 382

[Close]

BLAST of Lag0029183.1 vs. ExPASy Swiss-Prot
Match: F1LKH7 (Polyketide synthase 2 OS=Cannabis sativa OX=3483 GN=PKSG2 PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 8.0e-35
Identity = 69/128 (53.91%), Postives = 97/128 (75.78%), Query Frame = 0


Query: 2   GCLYQLSRNIPKYVGGNIKKCLGDAI-PSGINEYNSLFYAIHPGGRAVLDEIEQKLGLEK 61
           G ++ L +++P  +  NI+KCL +A  P GI+++NS+F+  HPGG+A+LD++E+KL L+ 
Sbjct: 256 GLMFDLHKDVPMLISNNIEKCLIEAFTPIGISDWNSIFWITHPGGKAILDKVEEKLHLKS 315

Query: 62  GKLEVSRYVLREYGNMMGSTVGFVLDETRKKSIREGKSTTGDGLECGVLVTLGPGLTIET 121
            K   SR+VL E+GNM  STV FV+DE RK+S+ EGKSTTGDG E GVL   GPGLT+E 
Sbjct: 316 DKFVDSRHVLSEHGNMSSSTVLFVMDELRKRSLEEGKSTTGDGFEWGVLFGFGPGLTVER 375

Query: 122 LILQSVPI 129
           ++L+SVPI
Sbjct: 376 VVLRSVPI 383

The following BLAST results are available for this feature:

BLAST of Lag0029183.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141572.1	2.7e-40	69.53	chalcone synthase-like [Momordica charantia]	[more]
XP_006473029.1	1.1e-36	62.79	chalcone synthase-like [Citrus sinensis]	[more]
XP_006434306.1	1.8e-36	62.79	chalcone synthase [Citrus clementina] >ESR47546.1 hypothetical protein CICLE_v10...	[more]
GAY52068.1	1.8e-36	62.79	hypothetical protein CUMW_139120, partial [Citrus unshiu]	[more]
3WD8_A	1.8e-36	62.79	TypeIII polyketide synthases [Citrus x microcarpa] >3WD8_B TypeIII polyketide sy...	[more]

BLAST of Lag0029183.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F1LKH9	5.5e-36	55.47	Polyketide synthase 5 OS=Cannabis sativa OX=3483 GN=PKSG5 PE=2 SV=1	[more]
P53416	2.1e-35	55.47	Bibenzyl synthase OS=Phalaenopsis sp. OX=36900 GN=BIBSY212 PE=2 SV=1	[more]
F1LKH8	4.7e-35	53.91	Polyketide synthase 4 OS=Cannabis sativa OX=3483 GN=PKSG4 PE=2 SV=1	[more]
Q94FV7	6.1e-35	52.34	Polyketide synthase BAS OS=Rheum palmatum OX=137221 GN=BAS PE=1 SV=1	[more]
F1LKH7	8.0e-35	53.91	Polyketide synthase 2 OS=Cannabis sativa OX=3483 GN=PKSG2 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016039	Thiolase-like	GENE3D	3.40.47.10		coord: 1..131 e-value: 1.0E-41 score: 143.8
IPR016039	Thiolase-like	SUPERFAMILY	53901	Thiolase-like	coord: 2..126
IPR012328	Chalcone/stilbene synthase, C-terminal	PFAM	PF02797	Chal_sti_synt_C	coord: 2..127 e-value: 6.9E-43 score: 146.2
None	No IPR available	PANTHER	PTHR11877:SF57	CHALCONE SYNTHASE-LIKE	coord: 1..128
IPR011141	Polyketide synthase, type III	PANTHER	PTHR11877	HYDROXYMETHYLGLUTARYL-COA SYNTHASE	coord: 1..128

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0029183	Lag0029183	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0029183.1.exon1	Lag0029183.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0029183.1	cds.Lag0029183.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0029183.1	Lag0029183.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0030639	polyketide biosynthetic process
molecular_function	GO:0016746	acyltransferase activity
molecular_function	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups