Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCAGCTAGCGAATGAGTTGAAGGCACGACCTCAAGGAAAACTTCCTGCGAATACTGAGCACCCTAGAAGGGTAGGTAACGAGCAGGTACAGGCAGTGCCTCTAAGGAGTGGTAAGCCACTAGAAGAGAGAAGAAAGCCTAGTAAAACCCAGGATGTAGAGAAAAATAGTGATAAAAAGGTTGTTGTTGAAAAAGAGTTGGAGTCTGGTAAAAATGATGGAGACAGCAATAATAATGCTGGAGCATCTGCCTCTGTTCCAGATGTAGAACGACCTTATGTACCGTCCCTACCTTATGTACTACCTCTACCTTTTCCACAAAGACAGAAGCCTACGAATCAGGATGGTCAATTTAAAAAAAAATAG mRNA sequence
ATGGGCCAGCTAGCGAATGAGTTGAAGGCACGACCTCAAGGAAAACTTCCTGCGAATACTGAGCACCCTAGAAGGGTAGGTAACGAGCAGGTACAGGCAGTGCCTCTAAGGAGTGGTAAGCCACTAGAAGAGAGAAGAAAGCCTAGTAAAACCCAGGATGTAGAGAAAAATAGTGATAAAAAGGTTGTTGTTGAAAAAGAGTTGGAGTCTGGTAAAAATGATGGAGACAGCAATAATAATGCTGGAGCATCTGCCTCTGTTCCAGATGTAGAACGACCTTATGTACCGTCCCTACCTTATGTACTACCTCTACCTTTTCCACAAAGACAGAAGCCTACGAATCAGGATGGTCAATTTAAAAAAAAATAG Coding sequence (CDS)
ATGGGCCAGCTAGCGAATGAGTTGAAGGCACGACCTCAAGGAAAACTTCCTGCGAATACTGAGCACCCTAGAAGGGTAGGTAACGAGCAGGTACAGGCAGTGCCTCTAAGGAGTGGTAAGCCACTAGAAGAGAGAAGAAAGCCTAGTAAAACCCAGGATGTAGAGAAAAATAGTGATAAAAAGGTTGTTGTTGAAAAAGAGTTGGAGTCTGGTAAAAATGATGGAGACAGCAATAATAATGCTGGAGCATCTGCCTCTGTTCCAGATGTAGAACGACCTTATGTACCGTCCCTACCTTATGTACTACCTCTACCTTTTCCACAAAGACAGAAGCCTACGAATCAGGATGGTCAATTTAAAAAAAAATAG Protein sequence
MGQLANELKARPQGKLPANTEHPRRVGNEQVQAVPLRSGKPLEERRKPSKTQDVEKNSDKKVVVEKELESGKNDGDSNNNAGASASVPDVERPYVPSLPYVLPLPFPQRQKPTNQDGQFKKK
Homology
BLAST of Lag0026198.1 vs. NCBI nr
Match:
XP_024018055.1 (uncharacterized protein LOC112090603 [Morus notabilis])
HSP 1 Score: 76.3 bits (186), Expect = 2.1e-10
Identity = 57/132 (43.18%), Postives = 71/132 (53.79%), Query Frame = 0
Query: 1 MGQLANELKARPQGKLPANTEHPRRVGNEQVQAVPLRSGKPLEERRKP--SKTQDVE-KN 60 +GQ+AN LK RPQG LP+NTE PRR G E +A+ LR GK LE R KP + T+ + Sbjct: 199 VGQIANSLKNRPQGSLPSNTEDPRRDGKEHCKAITLRCGKELESRAKPLAAHTEPTSIQG 258 Query: 61 SDKKVVVEKELESGKN-DGDSNNNA-------GASASVPDVERPYVPSLPYVLPLPFPQR 120 +KK + +KE K D D N A A+ S RP PLPFPQR Sbjct: 259 GEKKTLPQKEQPRSKQLDSDVQNAAALPQHSEAANTSNTSGNRP---------PLPFPQR 318 Query: 121 QKPTNQDGQFKK 122 + QDGQF+K Sbjct: 319 FQKQQQDGQFRK 321
BLAST of Lag0026198.1 vs. NCBI nr
Match:
XP_030509265.1 (uncharacterized protein LOC115723943 [Cannabis sativa])
HSP 1 Score: 75.5 bits (184), Expect = 3.6e-10
Identity = 53/128 (41.41%), Postives = 72/128 (56.25%), Query Frame = 0
Query: 1 MGQLANELKARPQGKLPANTEHPRRVGNEQVQAVPLRSGKPLEERR-------KPSKTQD 60 +G LANELKARPQG LP++TE+PRR G EQ +++ LRSGK L+ +P+ Q+ Sbjct: 240 LGHLANELKARPQGSLPSDTENPRRDGKEQCKSIHLRSGKHLKNSEEEIKGSGEPTSIQN 299 Query: 61 VEKNSDKKVVVEKELESGKNDGDSNNNAGASASVPDVERPYVPSLPYVLPLPFPQRQKPT 120 EK S K ++ ++ D S + + S P +P PLPFPQR + Sbjct: 300 DEKLSKK--TAQEIADTRPVDTASGQQSDSQQSAPVCTKP---------PLPFPQRFRKQ 356 Query: 121 NQDGQFKK 122 QDGQFKK Sbjct: 360 QQDGQFKK 356
BLAST of Lag0026198.1 vs. NCBI nr
Match:
XP_030505184.1 (uncharacterized protein LOC115720166 [Cannabis sativa])
HSP 1 Score: 72.8 bits (177), Expect = 2.3e-09
Identity = 53/128 (41.41%), Postives = 68/128 (53.12%), Query Frame = 0
Query: 1 MGQLANELKARPQGKLPANTEHPRRVGNEQVQAVPLRSGKPLEERR-------KPSKTQD 60 +G LANELKARPQG LP++TE+PRR G EQ +++ LRSGK L+ +P+ Q Sbjct: 409 LGHLANELKARPQGSLPSDTENPRRDGKEQCKSIHLRSGKHLKNSEEEIKGSGEPTSIQI 468 Query: 61 VEKNSDKKVVVEKELESGKNDGDSNNNAGASASVPDVERPYVPSLPYVLPLPFPQRQKPT 120 EK S K + +N+ SA V +P PLPFPQR + Sbjct: 469 DEKLSKKTAQEIADTRRVDTATGQQSNSQQSAPVCSSSKP---------PLPFPQRFQKQ 527 Query: 121 NQDGQFKK 122 QDGQFKK Sbjct: 529 QQDGQFKK 527
BLAST of Lag0026198.1 vs. NCBI nr
Match:
XP_030494874.1 (uncharacterized protein LOC115710657 [Cannabis sativa])
HSP 1 Score: 70.1 bits (170), Expect = 1.5e-08
Identity = 51/123 (41.46%), Postives = 71/123 (57.72%), Query Frame = 0
Query: 1 MGQLANELKARPQGKLPANTEHPRRVGNEQVQAVPLRSGKPLEERRKPSKTQDVEKNSDK 60 +G LANELKARPQG LP++TE+PRR G EQ A+ LRSGK L K S+ + Sbjct: 197 LGHLANELKARPQGSLPSDTENPRRDGKEQCNAIQLRSGKHL----KNSEEEIKGSGEPT 256 Query: 61 KVVVEKEL--ESGKNDGDSNNNAGASASVPDVERPYVPSLPYVLPLPFPQRQKPTNQDGQ 120 + ++K+L ++ + D++ + +E V S P PLPFPQR + QDGQ Sbjct: 257 SIQIDKKLSNKTAQEFADTSPVDTKNGRQLTIESAPVCSSPKP-PLPFPQRFQKQQQDGQ 314 Query: 121 FKK 122 F+K Sbjct: 317 FRK 314
BLAST of Lag0026198.1 vs. NCBI nr
Match:
XP_030504828.1 (uncharacterized protein LOC115719782 [Cannabis sativa])
HSP 1 Score: 67.4 bits (163), Expect = 9.8e-08
Identity = 48/121 (39.67%), Postives = 68/121 (56.20%), Query Frame = 0
Query: 1 MGQLANELKARPQGKLPANTEHPRRVGNEQVQAVPLRSGKPLEERRKPSKTQDVEKNSDK 60 +G LANELKARPQG LP++TE+PRR G EQ +++ LRSGK L+ + ++++ + + Sbjct: 22 LGHLANELKARPQGSLPSDTENPRRDGKEQCKSIHLRSGKHLK-----NSEEEIKGSGEP 81 Query: 61 KVVVEKELESGKNDGDSNNNAGASASVPDVERPYVPSLPYVLPLPFPQRQKPTNQDGQFK 120 + E S K G S +S +P PLPFPQR + QDGQFK Sbjct: 82 TSIQIDEKLSKKRPGTSIQTVCSS------PKP---------PLPFPQRFQKQQQDGQFK 122 Query: 121 K 122 + Sbjct: 142 R 122
The following BLAST results are available for this feature:
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G G G C C A G C T A G C G A A T G A G T T G A A G G C A C G A C C T C A A G G A A A A C T T C C T G C G A A T A C T G A G C A C C C T A G A A G G G T A G G T A A C G A G C A G G T A C A G G C A G T G C C T C T A A G G A G T G G T A A G C C A C T A G A A G A G A G A A G A A A G C C T A G T A A A A C C C A G G A T G T A G A G A A A A A T A G T G A T A A A A A G G T T G T T G T T G A A A A A G A G T T G G A G T C T G G T A A A A A T G A T G G A G A C A G C A A T A A T A A T G C T G G A G C A T C T G C C T C T G T T C C A G A T G T A G A A C G A C C T T A T G T A C C G T C C C T A C C T T A T G T A C T A C C T C T A C C T T T T C C A C A A A G A C A G A A G C C T A C G A A T C A G G A T G G T C A A T T T A A A A A A A A A T A G 50 100 150 200 250 300 350 Score = Score = Sequence mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 39..73
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..122
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name Unique Name Type
Lag0026198 Lag0026198 gene
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Type
Lag0026198.1.exon1 Lag0026198.1.exon1 exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Type
cds.Lag0026198.1 cds.Lag0026198.1 CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Type
Lag0026198.1 Lag0026198.1-protein polypeptide