Lag0026197.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026197.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Gag-Pol polyprotein
Location	chr10: 31972872 .. 31973703 (-)
Sequence length	519
RNA-Seq Expression	Lag0026197.1
Synteny	Lag0026197.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGGAGTTTCGACCGACACTATTAGACTGAGGTTGTTCCCATTCTCTCTTCAAGACAAAGCCAAGGACTGGTTGGAATCAGTTGAACCTAGTAGCATTAGTACCTAGGACGAGCTAGCTCATATGTTTCTTGGAAGAGATGACTTCAACAAGTTATATGTGGCCCACGGAGAGGGCATCATTGTCAAAGAAGGCTGGAATCTATGAAATTAATGAGTCAAGTTCGTTGAAAGAGAAAATGGCTTCCCTCACAAACGCGCTGAACAAGTTGTCCTCTTCTGAAGTGGTTAAGTCCATTTCCACCTTAGCAAAGAACTATTAAAAAAAGGAGAGTCAGGATGTGGAGGAAGTTCAATTTGTAGGCAACTGTTCATTAAATCAAACTCAAGGCCTGCCGAACTTCTATCACTCAGGTTTGCGCAATAATGAAAAATTTTCTCACTCGAATACTAAGAATGTTTTGCAGCCACCACCGGGATTTGCTTCATCGAGTACGCAGGAAAAGAAAAGCAACTTGGAAGAGATGGTTTCACTCTTCATAAAGGAGCATAAGGTTCTTAACGTAAGCCTCCAATCGTCGGTGAACACTTTGGTGACGACCGTGAACAATCATGACATTGCTCTCAAGAATATGGAAGTGCAGATGGGGCAAATTTCAACAACGGTGAACGCCCTTCAGAAGGGTAAATTCCCCAACGATACCGAAGTAAACCCCCGAGAGAAATTCAAGATGATAACGCTCAGAAGTGGGAGACAACTGGAGAACCGCTCGATTGAATTGATGTGGACTTTTCCTAACCGCAAGCGCACGGGTCAAGTAATAATATAG

mRNA sequence

ATGATCGGAGTTTCGACCGACACTATTAGACTGAGGTTGTTCCCATTCTCTCTTCAAGACAAAGCCAAGGACTGGTTGGAATCAGTTGAACCTAGTAGCATTAGTTTGCGCAATAATGAAAAATTTTCTCACTCGAATACTAAGAATGTTTTGCAGCCACCACCGGGATTTGCTTCATCGAGTACGCAGGAAAAGAAAAGCAACTTGGAAGAGATGGTTTCACTCTTCATAAAGGAGCATAAGGTTCTTAACGTAAGCCTCCAATCGTCGGTGAACACTTTGGTGACGACCGTGAACAATCATGACATTGCTCTCAAGAATATGGAAGTGCAGATGGGGCAAATTTCAACAACGGTGAACGCCCTTCAGAAGGGTAAATTCCCCAACGATACCGAAGTAAACCCCCGAGAGAAATTCAAGATGATAACGCTCAGAAGTGGGAGACAACTGGAGAACCGCTCGATTGAATTGATGTGGACTTTTCCTAACCGCAAGCGCACGGGTCAAGTAATAATATAG

Coding sequence (CDS)

ATGATCGGAGTTTCGACCGACACTATTAGACTGAGGTTGTTCCCATTCTCTCTTCAAGACAAAGCCAAGGACTGGTTGGAATCAGTTGAACCTAGTAGCATTAGTTTGCGCAATAATGAAAAATTTTCTCACTCGAATACTAAGAATGTTTTGCAGCCACCACCGGGATTTGCTTCATCGAGTACGCAGGAAAAGAAAAGCAACTTGGAAGAGATGGTTTCACTCTTCATAAAGGAGCATAAGGTTCTTAACGTAAGCCTCCAATCGTCGGTGAACACTTTGGTGACGACCGTGAACAATCATGACATTGCTCTCAAGAATATGGAAGTGCAGATGGGGCAAATTTCAACAACGGTGAACGCCCTTCAGAAGGGTAAATTCCCCAACGATACCGAAGTAAACCCCCGAGAGAAATTCAAGATGATAACGCTCAGAAGTGGGAGACAACTGGAGAACCGCTCGATTGAATTGATGTGGACTTTTCCTAACCGCAAGCGCACGGGTCAAGTAATAATATAG

Protein sequence

MIGVSTDTIRLRLFPFSLQDKAKDWLESVEPSSISLRNNEKFSHSNTKNVLQPPPGFASSSTQEKKSNLEEMVSLFIKEHKVLNVSLQSSVNTLVTTVNNHDIALKNMEVQMGQISTTVNALQKGKFPNDTEVNPREKFKMITLRSGRQLENRSIELMWTFPNRKRTGQVII

Homology

[Close]

BLAST of Lag0026197.1 vs. NCBI nr
Match: XP_023874613.1 (uncharacterized protein LOC111987139 [Quercus suber])

HSP 1 Score: 120.2 bits (300), Expect = 1.8e-23
Identity = 64/134 (47.76%), Postives = 89/134 (66.42%), Query Frame = 0


Query: 36  LRNNEKFSHSNTKNVLQPPPGFASSSTQEKKSNLEEMVSLFIKEHKVLNVSLQSSVNTLV 95
           LRN+E FS+ NTKNVLQPPPGF  S   EKK +LE+ +  F++E K       S ++ + 
Sbjct: 306 LRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMVSFVEETKATFKKSDSQLDNIE 365

Query: 96  TTVNNHDIALKNMEVQMGQISTTVNALQKGKFPNDTEVNPREKFKMITLRSGRQLENRSI 155
           T  +N    +KN+EVQ+GQ++TT+NA Q+G FP++TEVNP+E+ K ITLRSGR++E    
Sbjct: 366 THCSNMGATMKNLEVQIGQLATTINAQQRGTFPSNTEVNPKEQCKAITLRSGREIERSPS 425

Query: 156 ELMWTFPNRKRTGQ 170
           +   T P     GQ
Sbjct: 426 KETETTPTAPNNGQ 438

[Close]

BLAST of Lag0026197.1 vs. NCBI nr
Match: XP_023874613.1 (uncharacterized protein LOC111987139 [Quercus suber])

HSP 1 Score: 55.1 bits (131), Expect = 7.1e-04
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 1   MIGVSTDTIRLRLFPFSLQDKAKDWLESVEPSSIS 36
           M GV+ DTIRLRLFPFSL+DKA+ WL+S++P SI+
Sbjct: 77  MNGVTEDTIRLRLFPFSLRDKARGWLQSLQPGSIT 111

HSP 2 Score: 119.4 bits (298), Expect = 3.1e-23
Identity = 64/134 (47.76%), Postives = 89/134 (66.42%), Query Frame = 0


Query: 36  LRNNEKFSHSNTKNVLQPPPGFASSSTQEKKSNLEEMVSLFIKEHKVLNVSLQSSVNTLV 95
           LRN+E FS+ NTKNVLQPPPGF  S   EKK +LE+ +  F++E K       S ++ + 
Sbjct: 306 LRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMVSFVEETKARFKKSDSRLDNIE 365

Query: 96  TTVNNHDIALKNMEVQMGQISTTVNALQKGKFPNDTEVNPREKFKMITLRSGRQLENRSI 155
           T  +N    +KN+EVQ+GQ++TT+NA Q+G FP++TEVNP+E+ K ITLRSGR++E    
Sbjct: 366 THCSNMGATMKNLEVQIGQLATTINAQQRGTFPSNTEVNPKEQCKAITLRSGREIETSPS 425

Query: 156 ELMWTFPNRKRTGQ 170
           +   T P     GQ
Sbjct: 426 KETETTPTAPNNGQ 438

[Close]

BLAST of Lag0026197.1 vs. NCBI nr
Match: XP_023903214.1 (uncharacterized protein LOC112015077 [Quercus suber])

HSP 1 Score: 55.1 bits (131), Expect = 7.1e-04
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 1   MIGVSTDTIRLRLFPFSLQDKAKDWLESVEPSSIS 36
           M GV+ DTIRLRLFPFSL+DKA+ WL+S++P SI+
Sbjct: 77  MNGVTEDTIRLRLFPFSLRDKARGWLQSLQPGSIT 111

HSP 2 Score: 118.2 bits (295), Expect = 6.8e-23
Identity = 64/134 (47.76%), Postives = 89/134 (66.42%), Query Frame = 0


Query: 36  LRNNEKFSHSNTKNVLQPPPGFASSSTQEKKSNLEEMVSLFIKEHKVLNVSLQSSVNTLV 95
           LRN+E FS+ NTKNVLQPPPGF  S   EKK +LE+ +  F++E K       S ++ + 
Sbjct: 306 LRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMVSFVEETKARFRKSDSQLDNIE 365

Query: 96  TTVNNHDIALKNMEVQMGQISTTVNALQKGKFPNDTEVNPREKFKMITLRSGRQLENRSI 155
           T  +N    +KN+EVQ+GQ++TT+NA Q+G FP++TEVNP+E+ K ITLRSGR++E    
Sbjct: 366 THCSNMGAIMKNLEVQIGQLATTINAQQRGTFPSNTEVNPKEQCKAITLRSGREIERSPS 425

Query: 156 ELMWTFPNRKRTGQ 170
           +   T P     GQ
Sbjct: 426 KETETTPTVPNNGQ 438

[Close]

BLAST of Lag0026197.1 vs. NCBI nr
Match: XP_023929660.1 (uncharacterized protein LOC112040975 [Quercus suber])

HSP 1 Score: 55.1 bits (131), Expect = 7.1e-04
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 1   MIGVSTDTIRLRLFPFSLQDKAKDWLESVEPSSIS 36
           M GV+ DTIRLRLFPFSL+DKA+ WL+S++P SI+
Sbjct: 77  MNGVTEDTIRLRLFPFSLRDKARGWLQSLQPGSIT 111

HSP 2 Score: 118.2 bits (295), Expect = 6.8e-23
Identity = 64/134 (47.76%), Postives = 89/134 (66.42%), Query Frame = 0


Query: 36  LRNNEKFSHSNTKNVLQPPPGFASSSTQEKKSNLEEMVSLFIKEHKVLNVSLQSSVNTLV 95
           LRN+E FS+ NTKNVLQPPPGF  S   EKK +LE+ +  F++E K       S ++ + 
Sbjct: 36  LRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMISFVEETKARFKKSDSRLDNIK 95

Query: 96  TTVNNHDIALKNMEVQMGQISTTVNALQKGKFPNDTEVNPREKFKMITLRSGRQLENRSI 155
           T  +N    +KN EVQ+GQ++TT+NA Q+G FP++TEVNP+EK K ITLRSGR++E    
Sbjct: 96  THCSNMGATMKNPEVQIGQLATTINAQQRGTFPSNTEVNPKEKCKAITLRSGREIERTPS 155

Query: 156 ELMWTFPNRKRTGQ 170
           +   + P    +GQ
Sbjct: 156 KETESTPTTPNSGQ 168

[Close]

BLAST of Lag0026197.1 vs. NCBI nr
Match: XP_023889786.1 (uncharacterized protein LOC112001854 [Quercus suber])

HSP 1 Score: 116.7 bits (291), Expect = 2.0e-22
Identity = 64/131 (48.85%), Postives = 90/131 (68.70%), Query Frame = 0


Query: 36  LRNNEKFSHSNTKNVLQPPPGFASSSTQEKKSNLEEMVSLFIKEHKVLNVSLQSSVNTLV 95
           LRN+E FS+ NTKNVLQPPPGF  S   EKK +LE+ +  F++E K       S ++ + 
Sbjct: 191 LRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMVSFVEETKARFKKSDSLLDNIE 250

Query: 96  TTVNNHDIALKNMEVQMGQISTTVNALQKGKFPNDTEVNPREKFKMITLRSGRQLE---N 155
           T  +N    +KN+EVQ+GQ++TT+NA Q+G FP++TEVNP+E+ K ITLRSGR++E   +
Sbjct: 251 THCSNMGATMKNLEVQIGQLATTINAKQRGTFPSNTEVNPKEQCKAITLRSGREIETSPS 310

Query: 156 RSIELMWTFPN 164
           +  E   T PN
Sbjct: 311 KETESTSTTPN 320

The following BLAST results are available for this feature:

BLAST of Lag0026197.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023874613.1	1.8e-23	47.76	uncharacterized protein LOC111987139 [Quercus suber]	[more]
XP_023874613.1	7.1e-04	68.57	uncharacterized protein LOC111987139 [Quercus suber]	[more]
XP_023903214.1	7.1e-04	68.57	uncharacterized protein LOC112015077 [Quercus suber]	[more]
XP_023929660.1	7.1e-04	68.57	uncharacterized protein LOC112040975 [Quercus suber]	[more]
XP_023889786.1	2.0e-22	48.85	uncharacterized protein LOC112001854 [Quercus suber]	[more]

BLAST of Lag0026197.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..64

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0026197	Lag0026197	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0026197.1.exon2	Lag0026197.1.exon2	exon
Lag0026197.1.exon1	Lag0026197.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0026197.1	cds.Lag0026197.1_2	CDS
cds.Lag0026197.1	cds.Lag0026197.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0026197.1	Lag0026197.1-protein	polypeptide