Lag0026197 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026197
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGag-Pol polyprotein
Locationchr10: 31972872 .. 31973703 (-)
RNA-Seq ExpressionLag0026197
SyntenyLag0026197
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGGAGTTTCGACCGACACTATTAGACTGAGGTTGTTCCCATTCTCTCTTCAAGACAAAGCCAAGGACTGGTTGGAATCAGTTGAACCTAGTAGCATTAGTACCTAGGACGAGCTAGCTCATATGTTTCTTGGAAGAGATGACTTCAACAAGTTATATGTGGCCCACGGAGAGGGCATCATTGTCAAAGAAGGCTGGAATCTATGAAATTAATGAGTCAAGTTCGTTGAAAGAGAAAATGGCTTCCCTCACAAACGCGCTGAACAAGTTGTCCTCTTCTGAAGTGGTTAAGTCCATTTCCACCTTAGCAAAGAACTATTAAAAAAAGGAGAGTCAGGATGTGGAGGAAGTTCAATTTGTAGGCAACTGTTCATTAAATCAAACTCAAGGCCTGCCGAACTTCTATCACTCAGGTTTGCGCAATAATGAAAAATTTTCTCACTCGAATACTAAGAATGTTTTGCAGCCACCACCGGGATTTGCTTCATCGAGTACGCAGGAAAAGAAAAGCAACTTGGAAGAGATGGTTTCACTCTTCATAAAGGAGCATAAGGTTCTTAACGTAAGCCTCCAATCGTCGGTGAACACTTTGGTGACGACCGTGAACAATCATGACATTGCTCTCAAGAATATGGAAGTGCAGATGGGGCAAATTTCAACAACGGTGAACGCCCTTCAGAAGGGTAAATTCCCCAACGATACCGAAGTAAACCCCCGAGAGAAATTCAAGATGATAACGCTCAGAAGTGGGAGACAACTGGAGAACCGCTCGATTGAATTGATGTGGACTTTTCCTAACCGCAAGCGCACGGGTCAAGTAATAATATAG

mRNA sequence

ATGATCGGAGTTTCGACCGACACTATTAGACTGAGGTTGTTCCCATTCTCTCTTCAAGACAAAGCCAAGGACTGGTTGGAATCAGTTGAACCTAGTAGCATTAGTTTGCGCAATAATGAAAAATTTTCTCACTCGAATACTAAGAATGTTTTGCAGCCACCACCGGGATTTGCTTCATCGAGTACGCAGGAAAAGAAAAGCAACTTGGAAGAGATGGTTTCACTCTTCATAAAGGAGCATAAGGTTCTTAACGTAAGCCTCCAATCGTCGGTGAACACTTTGGTGACGACCGTGAACAATCATGACATTGCTCTCAAGAATATGGAAGTGCAGATGGGGCAAATTTCAACAACGGTGAACGCCCTTCAGAAGGGTAAATTCCCCAACGATACCGAAGTAAACCCCCGAGAGAAATTCAAGATGATAACGCTCAGAAGTGGGAGACAACTGGAGAACCGCTCGATTGAATTGATGTGGACTTTTCCTAACCGCAAGCGCACGGGTCAAGTAATAATATAG

Coding sequence (CDS)

ATGATCGGAGTTTCGACCGACACTATTAGACTGAGGTTGTTCCCATTCTCTCTTCAAGACAAAGCCAAGGACTGGTTGGAATCAGTTGAACCTAGTAGCATTAGTTTGCGCAATAATGAAAAATTTTCTCACTCGAATACTAAGAATGTTTTGCAGCCACCACCGGGATTTGCTTCATCGAGTACGCAGGAAAAGAAAAGCAACTTGGAAGAGATGGTTTCACTCTTCATAAAGGAGCATAAGGTTCTTAACGTAAGCCTCCAATCGTCGGTGAACACTTTGGTGACGACCGTGAACAATCATGACATTGCTCTCAAGAATATGGAAGTGCAGATGGGGCAAATTTCAACAACGGTGAACGCCCTTCAGAAGGGTAAATTCCCCAACGATACCGAAGTAAACCCCCGAGAGAAATTCAAGATGATAACGCTCAGAAGTGGGAGACAACTGGAGAACCGCTCGATTGAATTGATGTGGACTTTTCCTAACCGCAAGCGCACGGGTCAAGTAATAATATAG

Protein sequence

MIGVSTDTIRLRLFPFSLQDKAKDWLESVEPSSISLRNNEKFSHSNTKNVLQPPPGFASSSTQEKKSNLEEMVSLFIKEHKVLNVSLQSSVNTLVTTVNNHDIALKNMEVQMGQISTTVNALQKGKFPNDTEVNPREKFKMITLRSGRQLENRSIELMWTFPNRKRTGQVII
Homology
BLAST of Lag0026197 vs. NCBI nr
Match: XP_023874613.1 (uncharacterized protein LOC111987139 [Quercus suber])

HSP 1 Score: 120.2 bits (300), Expect = 1.8e-23
Identity = 64/134 (47.76%), Postives = 89/134 (66.42%), Query Frame = 0

Query: 36  LRNNEKFSHSNTKNVLQPPPGFASSSTQEKKSNLEEMVSLFIKEHKVLNVSLQSSVNTLV 95
           LRN+E FS+ NTKNVLQPPPGF  S   EKK +LE+ +  F++E K       S ++ + 
Sbjct: 306 LRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMVSFVEETKATFKKSDSQLDNIE 365

Query: 96  TTVNNHDIALKNMEVQMGQISTTVNALQKGKFPNDTEVNPREKFKMITLRSGRQLENRSI 155
           T  +N    +KN+EVQ+GQ++TT+NA Q+G FP++TEVNP+E+ K ITLRSGR++E    
Sbjct: 366 THCSNMGATMKNLEVQIGQLATTINAQQRGTFPSNTEVNPKEQCKAITLRSGREIERSPS 425

Query: 156 ELMWTFPNRKRTGQ 170
           +   T P     GQ
Sbjct: 426 KETETTPTAPNNGQ 438

BLAST of Lag0026197 vs. NCBI nr
Match: XP_023874613.1 (uncharacterized protein LOC111987139 [Quercus suber])

HSP 1 Score: 55.1 bits (131), Expect = 7.1e-04
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 0

Query: 1   MIGVSTDTIRLRLFPFSLQDKAKDWLESVEPSSIS 36
           M GV+ DTIRLRLFPFSL+DKA+ WL+S++P SI+
Sbjct: 77  MNGVTEDTIRLRLFPFSLRDKARGWLQSLQPGSIT 111


HSP 2 Score: 119.4 bits (298), Expect = 3.1e-23
Identity = 64/134 (47.76%), Postives = 89/134 (66.42%), Query Frame = 0

Query: 36  LRNNEKFSHSNTKNVLQPPPGFASSSTQEKKSNLEEMVSLFIKEHKVLNVSLQSSVNTLV 95
           LRN+E FS+ NTKNVLQPPPGF  S   EKK +LE+ +  F++E K       S ++ + 
Sbjct: 306 LRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMVSFVEETKARFKKSDSRLDNIE 365

Query: 96  TTVNNHDIALKNMEVQMGQISTTVNALQKGKFPNDTEVNPREKFKMITLRSGRQLENRSI 155
           T  +N    +KN+EVQ+GQ++TT+NA Q+G FP++TEVNP+E+ K ITLRSGR++E    
Sbjct: 366 THCSNMGATMKNLEVQIGQLATTINAQQRGTFPSNTEVNPKEQCKAITLRSGREIETSPS 425

Query: 156 ELMWTFPNRKRTGQ 170
           +   T P     GQ
Sbjct: 426 KETETTPTAPNNGQ 438

BLAST of Lag0026197 vs. NCBI nr
Match: XP_023903214.1 (uncharacterized protein LOC112015077 [Quercus suber])

HSP 1 Score: 55.1 bits (131), Expect = 7.1e-04
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 0

Query: 1   MIGVSTDTIRLRLFPFSLQDKAKDWLESVEPSSIS 36
           M GV+ DTIRLRLFPFSL+DKA+ WL+S++P SI+
Sbjct: 77  MNGVTEDTIRLRLFPFSLRDKARGWLQSLQPGSIT 111


HSP 2 Score: 118.2 bits (295), Expect = 6.8e-23
Identity = 64/134 (47.76%), Postives = 89/134 (66.42%), Query Frame = 0

Query: 36  LRNNEKFSHSNTKNVLQPPPGFASSSTQEKKSNLEEMVSLFIKEHKVLNVSLQSSVNTLV 95
           LRN+E FS+ NTKNVLQPPPGF  S   EKK +LE+ +  F++E K       S ++ + 
Sbjct: 306 LRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMVSFVEETKARFRKSDSQLDNIE 365

Query: 96  TTVNNHDIALKNMEVQMGQISTTVNALQKGKFPNDTEVNPREKFKMITLRSGRQLENRSI 155
           T  +N    +KN+EVQ+GQ++TT+NA Q+G FP++TEVNP+E+ K ITLRSGR++E    
Sbjct: 366 THCSNMGAIMKNLEVQIGQLATTINAQQRGTFPSNTEVNPKEQCKAITLRSGREIERSPS 425

Query: 156 ELMWTFPNRKRTGQ 170
           +   T P     GQ
Sbjct: 426 KETETTPTVPNNGQ 438

BLAST of Lag0026197 vs. NCBI nr
Match: XP_023929660.1 (uncharacterized protein LOC112040975 [Quercus suber])

HSP 1 Score: 55.1 bits (131), Expect = 7.1e-04
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 0

Query: 1   MIGVSTDTIRLRLFPFSLQDKAKDWLESVEPSSIS 36
           M GV+ DTIRLRLFPFSL+DKA+ WL+S++P SI+
Sbjct: 77  MNGVTEDTIRLRLFPFSLRDKARGWLQSLQPGSIT 111


HSP 2 Score: 118.2 bits (295), Expect = 6.8e-23
Identity = 64/134 (47.76%), Postives = 89/134 (66.42%), Query Frame = 0

Query: 36  LRNNEKFSHSNTKNVLQPPPGFASSSTQEKKSNLEEMVSLFIKEHKVLNVSLQSSVNTLV 95
           LRN+E FS+ NTKNVLQPPPGF  S   EKK +LE+ +  F++E K       S ++ + 
Sbjct: 36  LRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMISFVEETKARFKKSDSRLDNIK 95

Query: 96  TTVNNHDIALKNMEVQMGQISTTVNALQKGKFPNDTEVNPREKFKMITLRSGRQLENRSI 155
           T  +N    +KN EVQ+GQ++TT+NA Q+G FP++TEVNP+EK K ITLRSGR++E    
Sbjct: 96  THCSNMGATMKNPEVQIGQLATTINAQQRGTFPSNTEVNPKEKCKAITLRSGREIERTPS 155

Query: 156 ELMWTFPNRKRTGQ 170
           +   + P    +GQ
Sbjct: 156 KETESTPTTPNSGQ 168

BLAST of Lag0026197 vs. NCBI nr
Match: XP_023889786.1 (uncharacterized protein LOC112001854 [Quercus suber])

HSP 1 Score: 116.7 bits (291), Expect = 2.0e-22
Identity = 64/131 (48.85%), Postives = 90/131 (68.70%), Query Frame = 0

Query: 36  LRNNEKFSHSNTKNVLQPPPGFASSSTQEKKSNLEEMVSLFIKEHKVLNVSLQSSVNTLV 95
           LRN+E FS+ NTKNVLQPPPGF  S   EKK +LE+ +  F++E K       S ++ + 
Sbjct: 191 LRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMVSFVEETKARFKKSDSLLDNIE 250

Query: 96  TTVNNHDIALKNMEVQMGQISTTVNALQKGKFPNDTEVNPREKFKMITLRSGRQLE---N 155
           T  +N    +KN+EVQ+GQ++TT+NA Q+G FP++TEVNP+E+ K ITLRSGR++E   +
Sbjct: 251 THCSNMGATMKNLEVQIGQLATTINAKQRGTFPSNTEVNPKEQCKAITLRSGREIETSPS 310

Query: 156 RSIELMWTFPN 164
           +  E   T PN
Sbjct: 311 KETESTSTTPN 320

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023874613.11.8e-2347.76uncharacterized protein LOC111987139 [Quercus suber][more]
XP_023874613.17.1e-0468.57uncharacterized protein LOC111987139 [Quercus suber][more]
XP_023903214.17.1e-0468.57uncharacterized protein LOC112015077 [Quercus suber][more]
XP_023929660.17.1e-0468.57uncharacterized protein LOC112040975 [Quercus suber][more]
XP_023889786.12.0e-2248.85uncharacterized protein LOC112001854 [Quercus suber][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026197.1Lag0026197.1mRNA