Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTACAAGCTGGCCAAAGCTTTAGCCAATTGCCTCAAAATAGTTTTAAACTCTATTATAGTTCCCACCCAATTCGCTTTTGTCCCGAATAGGTTAATATTGGACAACATGACCATCGGCTTCGAAAGCATTGACACCCTTAATAGCAAAAAAAAAGGGGGAAAAGAAGGTTTTATTGCTATGAAGATCGACATGAGCAAGACTTACGACAGGGTTGAGTGGTTGTACATTGACAAAGTGATGGAGCAAATGGGTTTTAGCGAAAAGTGGAGAAGTAGCATATCTAACTTCTTGGCCTCGGTCCAATTCTCGGTGTTGGTGAATGGAATTCCTAGTGAAAGCTTCAAGCCAAAAAGAGGAATTAGGCAGGGAGATCCGCTCCCCCTTACATTTTCTTGA
mRNA sequence
ATGTCGTACAAGCTGGCCAAAGCTTTAGCCAATTGCCTCAAAATAGTTTTAAACTCTATTATAGTTCCCACCCAATTCGCTTTTGTCCCGAATAGGTTAATATTGGACAACATGACCATCGGCTTCGAAAGCATTGACACCCTTAATAGCAAAAAAAAAGGGGGAAAAGAAGGTTTTATTGCTATGAAGATCGACATGAGCAAGACTTACGACAGGGTTGAGTGGTTGTACATTGACAAAGTGATGGAGCAAATGGGTTTTAGCGAAAAGTGGAGAAGTAGCATATCTAACTTCTTGGCCTCGGTCCAATTCTCGGTGTTGGTGAATGGAATTCCTAGTGAAAGCTTCAAGCCAAAAAGAGGAATTAGGCAGGGAGATCCGCTCCCCCTTACATTTTCTTGA
Coding sequence (CDS)
ATGTCGTACAAGCTGGCCAAAGCTTTAGCCAATTGCCTCAAAATAGTTTTAAACTCTATTATAGTTCCCACCCAATTCGCTTTTGTCCCGAATAGGTTAATATTGGACAACATGACCATCGGCTTCGAAAGCATTGACACCCTTAATAGCAAAAAAAAAGGGGGAAAAGAAGGTTTTATTGCTATGAAGATCGACATGAGCAAGACTTACGACAGGGTTGAGTGGTTGTACATTGACAAAGTGATGGAGCAAATGGGTTTTAGCGAAAAGTGGAGAAGTAGCATATCTAACTTCTTGGCCTCGGTCCAATTCTCGGTGTTGGTGAATGGAATTCCTAGTGAAAGCTTCAAGCCAAAAAGAGGAATTAGGCAGGGAGATCCGCTCCCCCTTACATTTTCTTGA
Protein sequence
MSYKLAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQFSVLVNGIPSESFKPKRGIRQGDPLPLTFS
Homology
BLAST of Lag0016048.1 vs. NCBI nr
Match:
XP_022157437.1 (uncharacterized protein LOC111024135 [Momordica charantia])
HSP 1 Score: 143.3 bits (360), Expect = 1.5e-30
Identity = 70/124 (56.45%), Postives = 92/124 (74.19%), Query Frame = 0
Query: 5 LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKI 64
+AKALAN LK V++S+I PTQ AFVP R I DN IGFE I+ + +K+ GK G +AMK+
Sbjct: 337 IAKALANRLKSVMDSVISPTQSAFVPGRSITDNAIIGFECINAIKNKRY-GKLGEVAMKL 396
Query: 65 DMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQFSVLVNGIPSESFKPKRGIRQ 124
DMSK YDRVEW Y+ +M +MGF+ +W I N + SV+F+VL+NG+P + F P RG+RQ
Sbjct: 397 DMSKAYDRVEWQYLRGIMVKMGFANRWVDLIMNCVESVRFAVLINGVPGDEFTPNRGLRQ 456
Query: 125 GDPL 129
GDPL
Sbjct: 457 GDPL 459
BLAST of Lag0016048.1 vs. NCBI nr
Match:
XP_042954551.1 (uncharacterized protein LOC122290956 [Carya illinoinensis])
HSP 1 Score: 142.5 bits (358), Expect = 2.6e-30
Identity = 65/124 (52.42%), Postives = 90/124 (72.58%), Query Frame = 0
Query: 5 LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKI 64
+AK LAN LK +L II TQ AFVP R+I DN + +E + ++ +++K G+E ++A+K+
Sbjct: 591 IAKVLANRLKTILPKIISDTQSAFVPGRMISDNTIVAYEILHSMQNRRKNGREAYMALKL 650
Query: 65 DMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQFSVLVNGIPSESFKPKRGIRQ 124
DMSK YDR+EW +I KV++QMGF +W I + +V +S+LVNGIP SFKP RGIRQ
Sbjct: 651 DMSKAYDRLEWPFIHKVLQQMGFVREWTDLIMQCIGTVSYSILVNGIPQPSFKPSRGIRQ 710
Query: 125 GDPL 129
GDPL
Sbjct: 711 GDPL 714
BLAST of Lag0016048.1 vs. NCBI nr
Match:
XP_018853114.2 (uncharacterized protein LOC109015083 [Juglans regia])
HSP 1 Score: 140.6 bits (353), Expect = 9.9e-30
Identity = 66/124 (53.23%), Postives = 92/124 (74.19%), Query Frame = 0
Query: 5 LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKI 64
++K +AN LK++L II PTQ AF+P RLI DN+ + FE++ T+N++ + GK G +A+K+
Sbjct: 483 ISKTMANRLKLILPEIISPTQSAFIPGRLISDNVIVAFEALHTMNNRLQ-GKIGHMALKL 542
Query: 65 DMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQFSVLVNGIPSESFKPKRGIRQ 124
DMSK YDR+EW +I V+ +MGF EKW I N + +V +S+LVNG P +SF P RGIRQ
Sbjct: 543 DMSKAYDRIEWPFIQAVLSKMGFPEKWIKMIMNCVETVSYSLLVNGSPQQSFSPSRGIRQ 602
Query: 125 GDPL 129
GDPL
Sbjct: 603 GDPL 605
BLAST of Lag0016048.1 vs. NCBI nr
Match:
KAF5458478.1 (hypothetical protein F2P56_022503 [Juglans regia])
HSP 1 Score: 140.6 bits (353), Expect = 9.9e-30
Identity = 66/124 (53.23%), Postives = 92/124 (74.19%), Query Frame = 0
Query: 5 LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKI 64
++K +AN LK++L II PTQ AF+P RLI DN+ + FE++ T+N++ + GK G +A+K+
Sbjct: 484 ISKTMANRLKLILPEIISPTQSAFIPGRLISDNVIVAFEALHTMNNRLQ-GKIGHMALKL 543
Query: 65 DMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQFSVLVNGIPSESFKPKRGIRQ 124
DMSK YDR+EW +I V+ +MGF EKW I N + +V +S+LVNG P +SF P RGIRQ
Sbjct: 544 DMSKAYDRIEWPFIQAVLSKMGFPEKWIKMIMNCVETVSYSLLVNGSPQQSFSPSRGIRQ 603
Query: 125 GDPL 129
GDPL
Sbjct: 604 GDPL 606
BLAST of Lag0016048.1 vs. NCBI nr
Match:
XP_042974779.1 (uncharacterized protein LOC122306417 [Carya illinoinensis])
HSP 1 Score: 139.8 bits (351), Expect = 1.7e-29
Identity = 63/124 (50.81%), Postives = 89/124 (71.77%), Query Frame = 0
Query: 5 LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKI 64
+AK LAN LK +L +I TQ AFVP R+I DN + +E + ++ +++K G+E ++A+K+
Sbjct: 494 IAKVLANRLKTILPKLISDTQSAFVPGRMISDNTIVAYELLHSMQNRRKNGREAYMALKL 553
Query: 65 DMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQFSVLVNGIPSESFKPKRGIRQ 124
DMSK YDR+EW +I +V++QMGF +W I +V +S+LVNGIP SFKP RGIRQ
Sbjct: 554 DMSKAYDRLEWSFIHQVLQQMGFDREWTDLIMQCTGTVTYSILVNGIPQPSFKPSRGIRQ 613
Query: 125 GDPL 129
GDPL
Sbjct: 614 GDPL 617
BLAST of Lag0016048.1 vs. ExPASy Swiss-Prot
Match:
P16423 (Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)
HSP 1 Score: 44.7 bits (104), Expect = 9.7e-04
Identity = 42/133 (31.58%), Postives = 61/133 (45.86%), Query Frame = 0
Query: 5 LAKALANCLKIVLNSII--VPTQFAFVPNRLILDNMTIGFESID-TLNSKKKGGKEGFIA 64
L + L L LNS I P Q F+P DN TI +D L K + +IA
Sbjct: 424 LVRQLNAILATRLNSSINWDPRQRGFLPTDGCADNATI----VDLVLRHSHKHFRSCYIA 483
Query: 65 MKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQFSVLVNGIPSESFKPKRG 124
+D+SK +D + I + G + + + N S+ +G SE F P RG
Sbjct: 484 -NLDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARG 543
Query: 125 IRQGDPL-PLTFS 134
++QGDPL P+ F+
Sbjct: 544 VKQGDPLSPILFN 551
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P16423 | 9.7e-04 | 31.58 | Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS... | [more] |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Type |
Lag0016048 | Lag0016048 | gene |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Lag0016048.1.exon1 | Lag0016048.1.exon1 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
cds.Lag0016048.1 | cds.Lag0016048.1 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
Lag0016048.1 | Lag0016048.1-protein | polypeptide |