Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptide exon CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCTTCCATTTTGAGCTCCCAAGTAATGGCTATGGCTTTTGCAGCTCTCTCAGTCTCAGGCACTGTCATCTTCCTCTCCTTTTGCCTCCATAAATCCCACCCCTCAATTTCTTCTG GTAAGCAATTTCCATCTCCAAAAAAAAAAAAAAAAAAAACCCAAAAATTTCTTCAAAATTTTGTAAAAGGGTCATTAATTTTCAATTTTATTTTTCTAATTTTTTTGGTTTTTTTTTTAAGTGGGGAAGAAGAAAGAGATGAAGAAGAAGAAGATAAGAAAAAGAGTTCACTTTGCAGAGGATTTGGCCATAAGTAGTAATGAAGAGTTGCAGAGGAAAAAAGGCTTAAATTTGGGTTCATCGTCGCCGGCGGGAAGAGCTCCGCCGTCGTGTTTGACGAGCCACGGCGGAGGAGGCGGCGGAATGCCGGCCAATAGGGTGGCGCTGTACAATGGAATCTTAAGGGATCGTTTGGTTCAAAGGATGGCATATTCTCTTTAA mRNA sequence
ATGTCTTCTTCCATTTTGAGCTCCCAAGTAATGGCTATGGCTTTTGCAGCTCTCTCAGTCTCAGGCACTGTCATCTTCCTCTCCTTTTGCCTCCATAAATCCCACCCCTCAATTTCTTCTGTGGGGAAGAAGAAAGAGATGAAGAAGAAGAAGATAAGAAAAAGAGTTCACTTTGCAGAGGATTTGGCCATAAGTAGTAATGAAGAGTTGCAGAGGAAAAAAGGCTTAAATTTGGGTTCATCGTCGCCGGCGGGAAGAGCTCCGCCGTCGTGTTTGACGAGCCACGGCGGAGGAGGCGGCGGAATGCCGGCCAATAGGGTGGCGCTGTACAATGGAATCTTAAGGGATCGTTTGGTTCAAAGGATGGCATATTCTCTTTAA Coding sequence (CDS)
ATGTCTTCTTCCATTTTGAGCTCCCAAGTAATGGCTATGGCTTTTGCAGCTCTCTCAGTCTCAGGCACTGTCATCTTCCTCTCCTTTTGCCTCCATAAATCCCACCCCTCAATTTCTTCTGTGGGGAAGAAGAAAGAGATGAAGAAGAAGAAGATAAGAAAAAGAGTTCACTTTGCAGAGGATTTGGCCATAAGTAGTAATGAAGAGTTGCAGAGGAAAAAAGGCTTAAATTTGGGTTCATCGTCGCCGGCGGGAAGAGCTCCGCCGTCGTGTTTGACGAGCCACGGCGGAGGAGGCGGCGGAATGCCGGCCAATAGGGTGGCGCTGTACAATGGAATCTTAAGGGATCGTTTGGTTCAAAGGATGGCATATTCTCTTTAA Protein sequence
MSSSILSSQVMAMAFAALSVSGTVIFLSFCLHKSHPSISSVGKKKEMKKKKIRKRVHFAEDLAISSNEELQRKKGLNLGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDRLVQRMAYSL
Homology
BLAST of Lag0006899.1 vs. NCBI nr
Match:
XP_038890799.1 (uncharacterized protein LOC120080255 [Benincasa hispida])
HSP 1 Score: 166.8 bits (421), Expect = 1.2e-37
Identity = 104/128 (81.25%), Postives = 106/128 (82.81%), Query Frame = 0
Query: 1 MSSSILSSQVMAMAFAALSVSGTVI-FLSFCLHKSHPSISSVGKKKEM-KKKKIRKRVHF 60 MSSSILSSQ MAMAFAAL SGTVI LSFCLHKS PSISSV KKKEM KKKK RKRVHF Sbjct: 1 MSSSILSSQSMAMAFAAL--SGTVIVILSFCLHKSDPSISSVVKKKEMEKKKKGRKRVHF 60 Query: 61 AEDLAISSNEELQRKKGLNLGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDRL 120 A+DLAI EELQ KKGL LGSS P GR P LTS GGGGGGMPANRVALYNGILRDRL Sbjct: 61 ADDLAIFGTEELQIKKGLILGSSPPPGRGPARRLTSTGGGGGGMPANRVALYNGILRDRL 120 Query: 121 VQRMAYSL 127 V R+AYSL Sbjct: 121 VHRIAYSL 126
BLAST of Lag0006899.1 vs. NCBI nr
Match:
XP_008457539.1 (PREDICTED: uncharacterized protein LOC103497202 [Cucumis melo])
HSP 1 Score: 152.9 bits (385), Expect = 1.8e-33
Identity = 93/127 (73.23%), Postives = 102/127 (80.31%), Query Frame = 0
Query: 2 SSSILSSQVMAMAFAALSVSGTVIFLSFCLHKSHPSISSVGKKKEM-KKKKIRKRVHFAE 61 SSSILSSQ MAMAFAALS ++ LS LHKSHPSISSV +KKEM KKKK RKRVHF++ Sbjct: 3 SSSILSSQSMAMAFAALSAGTVIVVLSLYLHKSHPSISSVVEKKEMEKKKKGRKRVHFSD 62 Query: 62 DLAI-SSNEELQRKKGLNLGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDRLV 121 DLAI SS EEL+RKK + LGSS GRA LT +GGGGGGMPANR ALYNGILRDRLV Sbjct: 63 DLAIFSSTEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDRLV 122 Query: 122 QRMAYSL 127 R+AYSL Sbjct: 123 HRIAYSL 129
BLAST of Lag0006899.1 vs. NCBI nr
Match:
KGN60682.1 (hypothetical protein Csa_019276 [Cucumis sativus])
HSP 1 Score: 147.5 bits (371), Expect = 7.7e-32
Identity = 93/129 (72.09%), Postives = 105/129 (81.40%), Query Frame = 0
Query: 1 MSSSILSSQVMAMAFAALSVSGTVI-FLSFCLHKSHPSISSVGKKKEM-KKKKIRKRVHF 60 MSSSILSSQ MAMAFA GTVI LSF LHKSHPSISSV KKKE KKKK RK+VHF Sbjct: 1 MSSSILSSQSMAMAFA-----GTVIVVLSFYLHKSHPSISSVMKKKEKEKKKKGRKKVHF 60 Query: 61 AEDLAI-SSNEELQRKKGLNLGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDR 120 ++DLAI SS ++L+RKK + LGSS P+GRAP LT+ GGGGGG+PANR ALYNGILR+R Sbjct: 61 SDDLAIFSSTKDLKRKKDMMLGSSPPSGRAPARPLTTSGGGGGGLPANRAALYNGILRNR 120 Query: 121 LVQRMAYSL 127 LV R+AYSL Sbjct: 121 LVHRIAYSL 124
BLAST of Lag0006899.1 vs. NCBI nr
Match:
XP_022946911.1 (uncharacterized protein LOC111450851 isoform X2 [Cucurbita moschata])
HSP 1 Score: 136.0 bits (341), Expect = 2.3e-28
Identity = 82/116 (70.69%), Postives = 86/116 (74.14%), Query Frame = 0
Query: 11 MAMAFAALSVSGTVIFLSFCLHKSHPSISSVGKKKEMKKKKIRKRVHFAEDLAISSNEEL 70 MAMA AALS + LSF KS S+SSV K KKKK RKRVHFA+D A+ S EEL Sbjct: 1 MAMAMAALS-GAVAVVLSFRHRKSAASVSSVVK----KKKKGRKRVHFADDSAVCSTEEL 60 Query: 71 QRKKGLNLGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDRLVQRMAYSL 127 QRK GL LG S P GRAPP LTSHGGGG GMPANRVALYNGILRDRLV RMAYSL Sbjct: 61 QRKNGLILGPSPPVGRAPPPSLTSHGGGGSGMPANRVALYNGILRDRLVHRMAYSL 111
BLAST of Lag0006899.1 vs. NCBI nr
Match:
XP_022946910.1 (uncharacterized protein LOC111450851 isoform X1 [Cucurbita moschata])
HSP 1 Score: 133.7 bits (335), Expect = 1.1e-27
Identity = 83/121 (68.60%), Postives = 88/121 (72.73%), Query Frame = 0
Query: 11 MAMAFAALSVSGTVIFLSFCLHKSHPSISSVGKKKE-----MKKKKIRKRVHFAEDLAIS 70 MAMA AALS + LSF KS S+SS GK+K KKKK RKRVHFA+D A+ Sbjct: 1 MAMAMAALS-GAVAVVLSFRHRKSAASVSS-GKQKPPIFLVKKKKKGRKRVHFADDSAVC 60 Query: 71 SNEELQRKKGLNLGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDRLVQRMAYS 127 S EELQRK GL LG S P GRAPP LTSHGGGG GMPANRVALYNGILRDRLV RMAYS Sbjct: 61 STEELQRKNGLILGPSPPVGRAPPPSLTSHGGGGSGMPANRVALYNGILRDRLVHRMAYS 119
The following BLAST results are available for this feature:
Match Name E-value Identity Description
XP_038890799.1 1.2e-37 81.25 uncharacterized protein LOC120080255 [Benincasa hispida] [more]
XP_008457539.1 1.8e-33 73.23 PREDICTED: uncharacterized protein LOC103497202 [Cucumis melo] [more]
KGN60682.1 7.7e-32 72.09 hypothetical protein Csa_019276 [Cucumis sativus] [more]
XP_022946911.1 2.3e-28 70.69 uncharacterized protein LOC111450851 isoform X2 [Cucurbita moschata] [more]
XP_022946910.1 1.1e-27 68.60 uncharacterized protein LOC111450851 isoform X1 [Cucurbita moschata] [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G T C T T C T T C C A T T T T G A G C T C C C A A G T A A T G G C T A T G G C T T T T G C A G C T C T C T C A G T C T C A G G C A C T G T C A T C T T C C T C T C C T T T T G C C T C C A T A A A T C C C A C C C C T C A A T T T C T T C T G T G G G G A A G A A G A A A G A G A T G A A G A A G A A G A A G A T A A G A A A A A G A G T T C A C T T T G C A G A G G A T T T G G C C A T A A G T A G T A A T G A A G A G T T G C A G A G G A A A A A A G G C T T A A A T T T G G G T T C A T C G T C G C C G G C G G G A A G A G C T C C G C C G T C G T G T T T G A C G A G C C A C G G C G G A G G A G G C G G C G G A A T G C C G G C C A A T A G G G T G G C G C T G T A C A A T G G A A T C T T A A G G G A T C G T T T G G T T C A A A G G A T G G C A T A T T C T C T T T A A 50 100 150 200 250 300 350 Score = Score = Score = Score = Sequence mobidb-lite mobidb-lite PTHR33564 PTHR33564:SF11
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 74..99
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 74..88
None No IPR available PANTHER PTHR33564 TRANSMEMBRANE PROTEIN coord: 3..125
None No IPR available PANTHER PTHR33564:SF11 OS06G0604600 PROTEIN coord: 3..125
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name Unique Name Type
Lag0006899 Lag0006899 gene
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Type
Lag0006899.1.exon2 Lag0006899.1.exon2 exon
Lag0006899.1.exon1 Lag0006899.1.exon1 exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Type
cds.Lag0006899.1 cds.Lag0006899.1_2 CDS
cds.Lag0006899.1 cds.Lag0006899.1 CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Type
Lag0006899.1 Lag0006899.1-protein polypeptide