Lag0006899 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006899
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr6: 46942954 .. 46943455 (-)
RNA-Seq ExpressionLag0006899
SyntenyLag0006899
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCTTCCATTTTGAGCTCCCAAGTAATGGCTATGGCTTTTGCAGCTCTCTCAGTCTCAGGCACTGTCATCTTCCTCTCCTTTTGCCTCCATAAATCCCACCCCTCAATTTCTTCTGGTAAGCAATTTCCATCTCCAAAAAAAAAAAAAAAAAAAACCCAAAAATTTCTTCAAAATTTTGTAAAAGGGTCATTAATTTTCAATTTTATTTTTCTAATTTTTTTGGTTTTTTTTTTAAGTGGGGAAGAAGAAAGAGATGAAGAAGAAGAAGATAAGAAAAAGAGTTCACTTTGCAGAGGATTTGGCCATAAGTAGTAATGAAGAGTTGCAGAGGAAAAAAGGCTTAAATTTGGGTTCATCGTCGCCGGCGGGAAGAGCTCCGCCGTCGTGTTTGACGAGCCACGGCGGAGGAGGCGGCGGAATGCCGGCCAATAGGGTGGCGCTGTACAATGGAATCTTAAGGGATCGTTTGGTTCAAAGGATGGCATATTCTCTTTAA

mRNA sequence

ATGTCTTCTTCCATTTTGAGCTCCCAAGTAATGGCTATGGCTTTTGCAGCTCTCTCAGTCTCAGGCACTGTCATCTTCCTCTCCTTTTGCCTCCATAAATCCCACCCCTCAATTTCTTCTGTGGGGAAGAAGAAAGAGATGAAGAAGAAGAAGATAAGAAAAAGAGTTCACTTTGCAGAGGATTTGGCCATAAGTAGTAATGAAGAGTTGCAGAGGAAAAAAGGCTTAAATTTGGGTTCATCGTCGCCGGCGGGAAGAGCTCCGCCGTCGTGTTTGACGAGCCACGGCGGAGGAGGCGGCGGAATGCCGGCCAATAGGGTGGCGCTGTACAATGGAATCTTAAGGGATCGTTTGGTTCAAAGGATGGCATATTCTCTTTAA

Coding sequence (CDS)

ATGTCTTCTTCCATTTTGAGCTCCCAAGTAATGGCTATGGCTTTTGCAGCTCTCTCAGTCTCAGGCACTGTCATCTTCCTCTCCTTTTGCCTCCATAAATCCCACCCCTCAATTTCTTCTGTGGGGAAGAAGAAAGAGATGAAGAAGAAGAAGATAAGAAAAAGAGTTCACTTTGCAGAGGATTTGGCCATAAGTAGTAATGAAGAGTTGCAGAGGAAAAAAGGCTTAAATTTGGGTTCATCGTCGCCGGCGGGAAGAGCTCCGCCGTCGTGTTTGACGAGCCACGGCGGAGGAGGCGGCGGAATGCCGGCCAATAGGGTGGCGCTGTACAATGGAATCTTAAGGGATCGTTTGGTTCAAAGGATGGCATATTCTCTTTAA

Protein sequence

MSSSILSSQVMAMAFAALSVSGTVIFLSFCLHKSHPSISSVGKKKEMKKKKIRKRVHFAEDLAISSNEELQRKKGLNLGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDRLVQRMAYSL
Homology
BLAST of Lag0006899 vs. NCBI nr
Match: XP_038890799.1 (uncharacterized protein LOC120080255 [Benincasa hispida])

HSP 1 Score: 166.8 bits (421), Expect = 1.2e-37
Identity = 104/128 (81.25%), Postives = 106/128 (82.81%), Query Frame = 0

Query: 1   MSSSILSSQVMAMAFAALSVSGTVI-FLSFCLHKSHPSISSVGKKKEM-KKKKIRKRVHF 60
           MSSSILSSQ MAMAFAAL  SGTVI  LSFCLHKS PSISSV KKKEM KKKK RKRVHF
Sbjct: 1   MSSSILSSQSMAMAFAAL--SGTVIVILSFCLHKSDPSISSVVKKKEMEKKKKGRKRVHF 60

Query: 61  AEDLAISSNEELQRKKGLNLGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDRL 120
           A+DLAI   EELQ KKGL LGSS P GR P   LTS GGGGGGMPANRVALYNGILRDRL
Sbjct: 61  ADDLAIFGTEELQIKKGLILGSSPPPGRGPARRLTSTGGGGGGMPANRVALYNGILRDRL 120

Query: 121 VQRMAYSL 127
           V R+AYSL
Sbjct: 121 VHRIAYSL 126

BLAST of Lag0006899 vs. NCBI nr
Match: XP_008457539.1 (PREDICTED: uncharacterized protein LOC103497202 [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 1.8e-33
Identity = 93/127 (73.23%), Postives = 102/127 (80.31%), Query Frame = 0

Query: 2   SSSILSSQVMAMAFAALSVSGTVIFLSFCLHKSHPSISSVGKKKEM-KKKKIRKRVHFAE 61
           SSSILSSQ MAMAFAALS    ++ LS  LHKSHPSISSV +KKEM KKKK RKRVHF++
Sbjct: 3   SSSILSSQSMAMAFAALSAGTVIVVLSLYLHKSHPSISSVVEKKEMEKKKKGRKRVHFSD 62

Query: 62  DLAI-SSNEELQRKKGLNLGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDRLV 121
           DLAI SS EEL+RKK + LGSS   GRA    LT +GGGGGGMPANR ALYNGILRDRLV
Sbjct: 63  DLAIFSSTEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDRLV 122

Query: 122 QRMAYSL 127
            R+AYSL
Sbjct: 123 HRIAYSL 129

BLAST of Lag0006899 vs. NCBI nr
Match: KGN60682.1 (hypothetical protein Csa_019276 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 7.7e-32
Identity = 93/129 (72.09%), Postives = 105/129 (81.40%), Query Frame = 0

Query: 1   MSSSILSSQVMAMAFAALSVSGTVI-FLSFCLHKSHPSISSVGKKKEM-KKKKIRKRVHF 60
           MSSSILSSQ MAMAFA     GTVI  LSF LHKSHPSISSV KKKE  KKKK RK+VHF
Sbjct: 1   MSSSILSSQSMAMAFA-----GTVIVVLSFYLHKSHPSISSVMKKKEKEKKKKGRKKVHF 60

Query: 61  AEDLAI-SSNEELQRKKGLNLGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDR 120
           ++DLAI SS ++L+RKK + LGSS P+GRAP   LT+ GGGGGG+PANR ALYNGILR+R
Sbjct: 61  SDDLAIFSSTKDLKRKKDMMLGSSPPSGRAPARPLTTSGGGGGGLPANRAALYNGILRNR 120

Query: 121 LVQRMAYSL 127
           LV R+AYSL
Sbjct: 121 LVHRIAYSL 124

BLAST of Lag0006899 vs. NCBI nr
Match: XP_022946911.1 (uncharacterized protein LOC111450851 isoform X2 [Cucurbita moschata])

HSP 1 Score: 136.0 bits (341), Expect = 2.3e-28
Identity = 82/116 (70.69%), Postives = 86/116 (74.14%), Query Frame = 0

Query: 11  MAMAFAALSVSGTVIFLSFCLHKSHPSISSVGKKKEMKKKKIRKRVHFAEDLAISSNEEL 70
           MAMA AALS     + LSF   KS  S+SSV K    KKKK RKRVHFA+D A+ S EEL
Sbjct: 1   MAMAMAALS-GAVAVVLSFRHRKSAASVSSVVK----KKKKGRKRVHFADDSAVCSTEEL 60

Query: 71  QRKKGLNLGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDRLVQRMAYSL 127
           QRK GL LG S P GRAPP  LTSHGGGG GMPANRVALYNGILRDRLV RMAYSL
Sbjct: 61  QRKNGLILGPSPPVGRAPPPSLTSHGGGGSGMPANRVALYNGILRDRLVHRMAYSL 111

BLAST of Lag0006899 vs. NCBI nr
Match: XP_022946910.1 (uncharacterized protein LOC111450851 isoform X1 [Cucurbita moschata])

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-27
Identity = 83/121 (68.60%), Postives = 88/121 (72.73%), Query Frame = 0

Query: 11  MAMAFAALSVSGTVIFLSFCLHKSHPSISSVGKKKE-----MKKKKIRKRVHFAEDLAIS 70
           MAMA AALS     + LSF   KS  S+SS GK+K       KKKK RKRVHFA+D A+ 
Sbjct: 1   MAMAMAALS-GAVAVVLSFRHRKSAASVSS-GKQKPPIFLVKKKKKGRKRVHFADDSAVC 60

Query: 71  SNEELQRKKGLNLGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDRLVQRMAYS 127
           S EELQRK GL LG S P GRAPP  LTSHGGGG GMPANRVALYNGILRDRLV RMAYS
Sbjct: 61  STEELQRKNGLILGPSPPVGRAPPPSLTSHGGGGSGMPANRVALYNGILRDRLVHRMAYS 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038890799.11.2e-3781.25uncharacterized protein LOC120080255 [Benincasa hispida][more]
XP_008457539.11.8e-3373.23PREDICTED: uncharacterized protein LOC103497202 [Cucumis melo][more]
KGN60682.17.7e-3272.09hypothetical protein Csa_019276 [Cucumis sativus][more]
XP_022946911.12.3e-2870.69uncharacterized protein LOC111450851 isoform X2 [Cucurbita moschata][more]
XP_022946910.11.1e-2768.60uncharacterized protein LOC111450851 isoform X1 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..88
NoneNo IPR availablePANTHERPTHR33564TRANSMEMBRANE PROTEINcoord: 3..125
NoneNo IPR availablePANTHERPTHR33564:SF11OS06G0604600 PROTEINcoord: 3..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006899.1Lag0006899.1mRNA