Lag0005418.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005418.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr6: 17334052 .. 17337669 (-)
Sequence length	1089
RNA-Seq Expression	Lag0005418.1
Synteny	Lag0005418.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTCCGAAAAAACTTTTTCAAAGATCGCTGCTTCAAGCAACTCCTATGTGGGGCCAATTACTTGCAGTCGCTCCAAGGAAACCCAACACGAAGACAGCCAAACTCCTGTCATTGCAAACAAGATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCGCTGCAAAAAATCTGATGCTTGCCAAATTCGTCTCTTCTTCTCAGCAACCAAACGACACATCCAGTCCTGATGTGATGTCTGTTATAATGACTGATGCTGGAACTAGTGAAGAACGAATGGCTGAGGTTGAGAAGAAAATCAGCATGCTACTGAAGATGGTCGAAGAGAAAGACCAAGAAATCGTCTCTCTCAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAGTCAAACCCCTGCTATCAAAGACAAGGGAAAGATCATTGCACAAGATCAGTCACAACATTCCACTTCTATTGCTTCACTGTCCGTTCAGCAGCTTCAGGATATGATCATGAATTCCATCAGAGCTCAATATGGTGGACCGACTCAAAACTCTCTCTTGTATTCCAAGCCGTATACCAAGAGAATCGACAATCTGAGAATGCCTCATGGATACCAGCCACCAAAGTTTCAACAATTCGACGGGAAGGGCAATCCCAAACAGCACGTTGCTCATTTCGTCGAGACATGTGAAAACGATGGAACTAGAGGAGACCAACTAGTCAGGCAGTTCGTACGAACACTGAAGGGGAATGCTTTCGATTGGTATACTGACCTTGAGCCTGAGACTATCGATAGTTGGGAACAACTTGAGAAGGAGTTCCTCAACCGCTTCTACAGCTGTCGGGCTCTTAGAGTGAGTAAAAATATAGTATAAAATACTCTAGAATTCCTGTGCAAGTATACACAGTCTGCAACAAGTAATATTATCAATCCAAGGTCTGAATGAGCTTCCACTTTATCTATTTTGCGTAACTTCCTAATGGTTTCGAAGATAATAAAAATGTTGGGTTTTATAAGAATTATGCTGAAGCAAAATAAATGACAGAACAACAAGTAAAAAAATAGATAGACAGATCAAAGACAGGCGCTGGTTAGGTTTTAGTGATTGTTCTAAGATATGCTCTAGCAATATTATTGATCATGCATTTCTCGCAGTATTATTAGCGGATTCCTCCCGGAACTCCGGATATTTTGGAATATGTTTCAAACCCAATGAAGTACGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAGTTTGAATATGTATATACCTTCCAAATGATGGGCAAAGGTTGATGTTGTGTCCTTTCAAATCCTACAAAAAAAATGACCGATAATTAGCAAAAAAAAAAAGCCAAAAAAAAAAGATGTCTGTAACCAAGTTTTTTTAAAAAAAAAAAGAGAGAAAAAAAAAGAAAGAAAAGAAATCTCTTGTAGGCTAAAAAAATAAAAGAAAAATGGGGCATGTGACAAAAGAAAAGTAAAAAAAATTCTAAACGAAAAAAAAAAAAAAGTCAAGCAATGCGGCCTTTAACCTACACATGCGACAACTTAAAAAAAAAAAAAAAAAAAGACATATACAAAACGACTTAATGCAACATTTAAACCTCAAAAATATATGCATAAAGAAGGTAAGGTGAGTAAACACATATGTTGTTTATTTTTAAGGTTCAATTACTGAAGGATATTAAAAAAAAAAAAATCTTGAAATTGCGGCACTCAACAAATAGGGGCTGATAAACTTTGAAGACCTGGACTCTTTTGTTCATCAAAAGAAAAGGATTTGCAAAACCTAGGTGTTTCATTGTTTATTAAAACAAAATAAAAATAAAATAAATAAAAAGTTGTGGTTGGGATAAAATAATAATAATAATAATAATAAAACCCTAATGTATTGGGCAGTGTAAACAAAAAATAAATAATAATAAATAAATAAAAGAAAATAAAAAAAAAGAAGCCTAATGTAAGCGACATTAAAAAAAATCAAAAGTTGCAGCGCACGCATCACAGCAAAGTTTGGATTATGCACAGTGACACACATATGCATTTATATATATGTGAAGAAACATTTTGAATAAAAGCACCTCCTATTGTGCAAAATCCATGATGTATAGCCGTAGTATTATGTGTAAAGAATGCAAGACTTGCGGCAGTAGCTATGCGTGAAGGTAATAAAAGATTTTTTTTTAAGGATATTTTTACTTACCGTCGAAGCAACGAAAAGGCACAAAGGGAGGTTATTGCTCGAATTCAAGGCCTACACAAAGAAGAAAATACATGAGCATTTATAGTCAAATGAAAGAAAGAAAAGAGAAGTTAAAGAGAAGAGAATTTTTTCTTACCTAACTTCTTGCTTGAATGGCTTTGTGTCTTGACCTATACAACTTATTCAATTTATAAGGGAGAAATTAGGTCAAACACATAAGGAAAAGTTGCTTTTTGGCCAAGGAAATTTTTGCCTAATCAAATATGGCAATGAATTTCCTACAATTGCTATTTAGGAAAAAAATTGCCTCCAAATTACATGAATCAAGAGAGAATTTTTGGCCTAATAAAATTGACAAGCCAAGAGACTTCCAATTCTTGTTCAAAGTACCTATCTACCTCCAAATTCATGTCCAAGGTAAAGAAAAAAAATTGTGGCAATTTTGGCGAAAATTAATTTTCCAATTTAAAAAAAAAAGTATTGGAAATCAAAATTCAAAATTTGCCTAAAATCAATGTTGGTAGCGAAAACGAAATTATTTGGAATTATAAATTAATATTCTAATTAATTTCGCCTATCGACACAAATTAAAGTTATGACTAAACGTCATATATTTTTCTCACAAACCATGCTTTTCAAAATCCATGCACGCATATAGGTGCATAAATTTCGAAAAGGGGACATTTGTTGAGTGAGAAATTTCGGCCAATTACAAATGGCCATGTCATTAATTTAAATTAATGATAAAATAATTTTGGGACCAATTACAAATTTACACGTGTCCCTAAATTAAATTAATAGACATTAAAATTCGGCAAATAAAACAATGCCACTTGTCTATCATTGATCCATCAGATGACGTAAGTCGAGTCCAACCAAATTATGCCACGTGGCAATTGGATGCGAGATTGATGTGACCCGAGATCATTGAAGAAATTGGGCTAAATTAAAATGATCCAATTTTATTAAAAATGAGTTGGATTAAAGCCCAAATAGAGTCAAAGTCCAAAGGCTGGACCCAAGCCCAAACCCATATGAGGTCCACCCAACTCTATAAATAGAGGAGGTCACCATTCATTTTGGGCATTCAGACAGAGTCAGAGAAGCCAGAGCCCAGAGCATTCTCCTAAGGTCCAGAGTCTTCAGAAGTCAGAGAGTTTAGAGAATTCAGAAGATCCAAGATTCAGAATTCGACCATCTCAAAACTCAGAAGATCCAACGACTGAAAGACTCCAAAGAATCAACCGTTTCTTCATCAAGATACAAGTTGAAGATTCAACATTCCTCCGTCTGAGATCAAGCTTGTCGGCCCTCAGATCAGACTCCATATTTTGA

mRNA sequence

ATGACTTCCGAAAAAACTTTTTCAAAGATCGCTGCTTCAAGCAACTCCTATGTGGGGCCAATTACTTGCAGTCGCTCCAAGGAAACCCAACACGAAGACAGCCAAACTCCTGTCATTGCAAACAAGATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCGCTGCAAAAAATCTGATGCTTGCCAAATTCGTCTCTTCTTCTCAGCAACCAAACGACACATCCAGTCCTGATGTGATGTCTGTTATAATGACTGATGCTGGAACTAGTGAAGAACGAATGGCTGAGGTTGAGAAGAAAATCAGCATGCTACTGAAGATGGTCGAAGAGAAAGACCAAGAAATCGTCTCTCTCAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAGTCAAACCCCTGCTATCAAAGACAAGGGAAAGATCATTGCACAAGATCAGTCACAACATTCCACTTCTATTGCTTCACTGTCCGTTCAGCAGCTTCAGGATATGATCATGAATTCCATCAGAGCTCAATATGGTGGACCGACTCAAAACTCTCTCTTGTATTCCAAGCCGTATACCAAGAGAATCGACAATCTGAGAATGCCTCATGGATACCAGCCACCAAAGTTTCAACAATTCGACGGGAAGGGCAATCCCAAACAGCACGTTGCTCATTTCGTCGAGACATGTGAAAACGATGGAACTAGAGGAGACCAACTAGTCAGGCAGTTCGTACGAACACTGAAGGGGAATGCTTTCGATTGGTATACTGACCTTGAGCCTGAGACTATCGATAGTTGGGAACAACTTGAGAAGGAGTTCCTCAACCGCTTCTACAGCTGTCGGGCTCTTAGAAGTCAGAGAAGCCAGAGCCCAGAGCATTCTCCTAAGGTCCAGAGTCTTCAGAAGTCAGAGAGTTTAGAGAATTCAGAAGATCCAAGATTCAGAATTCGACCATCTCAAAACTCAGAAGATCCAACGACTGAAAGACTCCAAAGAATCAACCGTTTCTTCATCAAGATACAAGTTGAAGATTCAACATTCCTCCGTCTGAGATCAAGCTTGTCGGCCCTCAGATCAGACTCCATATTTTGA

Coding sequence (CDS)

ATGACTTCCGAAAAAACTTTTTCAAAGATCGCTGCTTCAAGCAACTCCTATGTGGGGCCAATTACTTGCAGTCGCTCCAAGGAAACCCAACACGAAGACAGCCAAACTCCTGTCATTGCAAACAAGATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCGCTGCAAAAAATCTGATGCTTGCCAAATTCGTCTCTTCTTCTCAGCAACCAAACGACACATCCAGTCCTGATGTGATGTCTGTTATAATGACTGATGCTGGAACTAGTGAAGAACGAATGGCTGAGGTTGAGAAGAAAATCAGCATGCTACTGAAGATGGTCGAAGAGAAAGACCAAGAAATCGTCTCTCTCAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAGTCAAACCCCTGCTATCAAAGACAAGGGAAAGATCATTGCACAAGATCAGTCACAACATTCCACTTCTATTGCTTCACTGTCCGTTCAGCAGCTTCAGGATATGATCATGAATTCCATCAGAGCTCAATATGGTGGACCGACTCAAAACTCTCTCTTGTATTCCAAGCCGTATACCAAGAGAATCGACAATCTGAGAATGCCTCATGGATACCAGCCACCAAAGTTTCAACAATTCGACGGGAAGGGCAATCCCAAACAGCACGTTGCTCATTTCGTCGAGACATGTGAAAACGATGGAACTAGAGGAGACCAACTAGTCAGGCAGTTCGTACGAACACTGAAGGGGAATGCTTTCGATTGGTATACTGACCTTGAGCCTGAGACTATCGATAGTTGGGAACAACTTGAGAAGGAGTTCCTCAACCGCTTCTACAGCTGTCGGGCTCTTAGAAGTCAGAGAAGCCAGAGCCCAGAGCATTCTCCTAAGGTCCAGAGTCTTCAGAAGTCAGAGAGTTTAGAGAATTCAGAAGATCCAAGATTCAGAATTCGACCATCTCAAAACTCAGAAGATCCAACGACTGAAAGACTCCAAAGAATCAACCGTTTCTTCATCAAGATACAAGTTGAAGATTCAACATTCCTCCGTCTGAGATCAAGCTTGTCGGCCCTCAGATCAGACTCCATATTTTGA

Protein sequence

MTSEKTFSKIAASSNSYVGPITCSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAKNLMLAKFVSSSQQPNDTSSPDVMSVIMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIVSLRNQMESRDVAESSQTPAIKDKGKIIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGPTQNSLLYSKPYTKRIDNLRMPHGYQPPKFQQFDGKGNPKQHVAHFVETCENDGTRGDQLVRQFVRTLKGNAFDWYTDLEPETIDSWEQLEKEFLNRFYSCRALRSQRSQSPEHSPKVQSLQKSESLENSEDPRFRIRPSQNSEDPTTERLQRINRFFIKIQVEDSTFLRLRSSLSALRSDSIF

Homology

[Close]

BLAST of Lag0005418.1 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 337.0 bits (863), Expect = 2.0e-88
Identity = 180/284 (63.38%), Postives = 221/284 (77.82%), Query Frame = 0


Query: 1   MTSEKTFSKIAASSNSYVGPITCSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAKN 60
           M S+K  SK +A+S++Y GPIT SRSK       Q   IA  +L+++ ES +  I   +N
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60

Query: 61  LMLAKFVSSSQQPNDTSSPDVMSVIMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIVSL 120
            +   + S+S +    + PDVMSV+M D    E  MAE+E+KI++L+K+V+E+D EI +L
Sbjct: 61  PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 RNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSTSIASLSVQQLQDMIMNSIRAQY 180
           + QM++R+ AESSQTP +K  DKGK + Q+    Q STS+ASLSVQQLQDMI NSIRAQY
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITNSIRAQY 180

Query: 181 GGPTQNSLLYSKPYTKRIDNLRMPHGYQPPKFQQFDGKGNPKQHVAHFVETCENDGTRGD 240
           GGP+Q S +YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHFVETCEN G+RGD
Sbjct: 181 GGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAGSRGD 240

Query: 241 QLVRQFVRTLKGNAFDWYTDLEPETIDSWEQLEKEFLNRFYSCR 281
           QLVRQFVR+LKGNAF+WYTDLEPE+I+SWEQLEKEFLNRFYS R
Sbjct: 241 QLVRQFVRSLKGNAFEWYTDLEPESIESWEQLEKEFLNRFYSTR 283

[Close]

BLAST of Lag0005418.1 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 337.0 bits (863), Expect = 2.0e-88
Identity = 180/284 (63.38%), Postives = 221/284 (77.82%), Query Frame = 0


Query: 1   MTSEKTFSKIAASSNSYVGPITCSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAKN 60
           M S+K  SK +A+S++Y GPIT SRSK       Q   IA  +L+++ ES +  I   +N
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60

Query: 61  LMLAKFVSSSQQPNDTSSPDVMSVIMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIVSL 120
            +   + S+S +    + PDVMSV+M D    E  MAE+E+KI++L+K+V+E+D EI +L
Sbjct: 61  PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 RNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSTSIASLSVQQLQDMIMNSIRAQY 180
           + QM++R+ AESSQTP +K  DKGK + Q+    Q STS+ASLSVQQLQDMI NSIRAQY
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITNSIRAQY 180

Query: 181 GGPTQNSLLYSKPYTKRIDNLRMPHGYQPPKFQQFDGKGNPKQHVAHFVETCENDGTRGD 240
           GGP+Q S +YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHFVETCEN G+RGD
Sbjct: 181 GGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAGSRGD 240

Query: 241 QLVRQFVRTLKGNAFDWYTDLEPETIDSWEQLEKEFLNRFYSCR 281
           QLVRQFVR+LKGNAF+WYTDLEPE+I+SWEQLEKEFLNRFYS R
Sbjct: 241 QLVRQFVRSLKGNAFEWYTDLEPESIESWEQLEKEFLNRFYSTR 283

[Close]

BLAST of Lag0005418.1 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 7.5e-88
Identity = 179/284 (63.03%), Postives = 221/284 (77.82%), Query Frame = 0


Query: 1   MTSEKTFSKIAASSNSYVGPITCSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAKN 60
           M S+K  SK +A+S++Y GPIT SRSK       Q   IA  +L+++ ES +  I   +N
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60

Query: 61  LMLAKFVSSSQQPNDTSSPDVMSVIMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIVSL 120
            +   + S+S +    + PDVMSV+M D    E  MAE+E+KI++L+K+V+E+D EI +L
Sbjct: 61  PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 RNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSTSIASLSVQQLQDMIMNSIRAQY 180
           + QM++R+ AESSQTP +K  DKGK + Q+    Q STS+ASLSVQQLQDMI +SIRAQY
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITSSIRAQY 180

Query: 181 GGPTQNSLLYSKPYTKRIDNLRMPHGYQPPKFQQFDGKGNPKQHVAHFVETCENDGTRGD 240
           GGP+Q S +YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHFVETCEN G+RGD
Sbjct: 181 GGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAGSRGD 240

Query: 241 QLVRQFVRTLKGNAFDWYTDLEPETIDSWEQLEKEFLNRFYSCR 281
           QLVRQFVR+LKGNAF+WYTDLEPE+I+SWEQLEKEFLNRFYS R
Sbjct: 241 QLVRQFVRSLKGNAFEWYTDLEPESIESWEQLEKEFLNRFYSTR 283

[Close]

BLAST of Lag0005418.1 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 7.5e-88
Identity = 179/284 (63.03%), Postives = 221/284 (77.82%), Query Frame = 0


Query: 1   MTSEKTFSKIAASSNSYVGPITCSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAKN 60
           M S+K  SK +A+S++Y GPIT SRSK       Q   IA  +L+++ ES +  I   +N
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60

Query: 61  LMLAKFVSSSQQPNDTSSPDVMSVIMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIVSL 120
            +   + S+S +    + PDVMSV+M D    E  MAE+E+KI++L+K+V+E+D EI +L
Sbjct: 61  PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 RNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSTSIASLSVQQLQDMIMNSIRAQY 180
           + QM++R+ AESSQTP +K  DKGK + Q+    Q STS+ASLSVQQLQDMI +SIRAQY
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITSSIRAQY 180

Query: 181 GGPTQNSLLYSKPYTKRIDNLRMPHGYQPPKFQQFDGKGNPKQHVAHFVETCENDGTRGD 240
           GGP+Q S +YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHFVETCEN G+RGD
Sbjct: 181 GGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAGSRGD 240

Query: 241 QLVRQFVRTLKGNAFDWYTDLEPETIDSWEQLEKEFLNRFYSCR 281
           QLVRQFVR+LKGNAF+WYTDLEPE+I+SWEQLEKEFLNRFYS R
Sbjct: 241 QLVRQFVRSLKGNAFEWYTDLEPESIESWEQLEKEFLNRFYSTR 283

[Close]

BLAST of Lag0005418.1 vs. NCBI nr
Match: XP_031737053.1 (uncharacterized protein LOC116402138 [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 7.5e-88
Identity = 179/284 (63.03%), Postives = 221/284 (77.82%), Query Frame = 0


Query: 1   MTSEKTFSKIAASSNSYVGPITCSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAKN 60
           M S+K  SK +A+S++Y GPIT SRSK       Q   IA  +L+++ ES +  I   +N
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60

Query: 61  LMLAKFVSSSQQPNDTSSPDVMSVIMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIVSL 120
            +   + S+S +    + PDVMSV+M D    E  MAE+E+KI++L+K+V+E+D EI +L
Sbjct: 61  PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 RNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSTSIASLSVQQLQDMIMNSIRAQY 180
           + QM++R+ AESSQTP +K  DKGK + Q+    Q STS+ASLSVQQLQDMI +SIRAQY
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITSSIRAQY 180

Query: 181 GGPTQNSLLYSKPYTKRIDNLRMPHGYQPPKFQQFDGKGNPKQHVAHFVETCENDGTRGD 240
           GGP+Q S +YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHFVETCEN G+RGD
Sbjct: 181 GGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAGSRGD 240

Query: 241 QLVRQFVRTLKGNAFDWYTDLEPETIDSWEQLEKEFLNRFYSCR 281
           QLVRQFVR+LKGNAF+WYTDLEPE+I+SWEQLEKEFLNRFYS R
Sbjct: 241 QLVRQFVRSLKGNAFEWYTDLEPESIESWEQLEKEFLNRFYSTR 283

[Close]

BLAST of Lag0005418.1 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 5.8e-86
Identity = 177/284 (62.32%), Postives = 213/284 (75.00%), Query Frame = 0


Query: 1   MTSEKTFSKIAASSNSYVGPITCSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAKN 60
           M S+K  S  + +SN+Y GPIT SRSK    E  Q   +A  +L+++ ES +  I   +N
Sbjct: 1   MASKKAASNSSVASNAYTGPITRSRSKGITQEQDQGSNVAQSILKQLMESLKAGIVIKEN 60

Query: 61  LMLAKFVSSSQQPNDTSSPDVMSVIMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIVSL 120
            +     SSS +    + PDVMSV+M D  T E  MAE+E+KI+ L+K VEE+D EI++L
Sbjct: 61  PLYDNSDSSSSKSKKETHPDVMSVMMADI-TPEAAMAEMERKINFLMKAVEERDHEIIAL 120

Query: 121 RNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSTSIASLSVQQLQDMIMNSIRAQY 180
           R QM +R+ AESSQTP +K  DKGK + Q+    Q S S+ASLSVQQLQDMI NSIRAQY
Sbjct: 121 REQMRTRETAESSQTPIVKATDKGKNVVQENQPQQQSVSVASLSVQQLQDMIANSIRAQY 180

Query: 181 GGPTQNSLLYSKPYTKRIDNLRMPHGYQPPKFQQFDGKGNPKQHVAHFVETCENDGTRGD 240
           GGP Q + +YSK YTKRIDNLRMP GYQPPKFQQF+GKGNPKQH+AHF ETCEN G+RGD
Sbjct: 181 GGPPQTTFMYSKSYTKRIDNLRMPLGYQPPKFQQFNGKGNPKQHIAHFNETCENAGSRGD 240

Query: 241 QLVRQFVRTLKGNAFDWYTDLEPETIDSWEQLEKEFLNRFYSCR 281
           QLVRQFV++LKGNAF+WYTDLEPE IDSWEQLEKEFLNRFYS R
Sbjct: 241 QLVRQFVQSLKGNAFEWYTDLEPEVIDSWEQLEKEFLNRFYSTR 283

[Close]

BLAST of Lag0005418.1 vs. ExPASy TrEMBL
Match: A0A5D3CD35 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00070 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 3.5e-83
Identity = 172/284 (60.56%), Postives = 211/284 (74.30%), Query Frame = 0


Query: 1   MTSEKTFSKIAASSNSYVGPITCSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAKN 60
           M S+KT S  + +S++Y GPIT S SK    E  Q   +A  +L+++ ES ++ I   +N
Sbjct: 1   MASKKTASNSSVASDAYTGPITLSHSKGITQEQDQGSNVAQSILKQLMESPKVGIVIKEN 60

Query: 61  LMLAKFVSSSQQPNDTSSPDVMSVIMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIVSL 120
            +   F  +S +    + PDVM V+M D  T+E  MA++EKKI+ L+K +EE D EI +L
Sbjct: 61  PLYDNFDYASSKSKKEAHPDVMFVMMADI-TAEAAMAKMEKKINFLMKAMEEGDHEITAL 120

Query: 121 RNQMESRDVAESSQTPAIK--DKGKIIAQ--DQSQHSTSIASLSVQQLQDMIMNSIRAQY 180
           R QM +R+ AESSQTP +K  DKGK + Q     Q S SIASLSVQ+LQDMI NSIRAQY
Sbjct: 121 REQMRTRETAESSQTPVVKATDKGKNVVQKNQPQQQSVSIASLSVQRLQDMIANSIRAQY 180

Query: 181 GGPTQNSLLYSKPYTKRIDNLRMPHGYQPPKFQQFDGKGNPKQHVAHFVETCENDGTRGD 240
           GGP Q + +YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQH+AHFVETC N G+RGD
Sbjct: 181 GGPPQTTFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHIAHFVETCRNAGSRGD 240

Query: 241 QLVRQFVRTLKGNAFDWYTDLEPETIDSWEQLEKEFLNRFYSCR 281
           QLVRQFVR+LKGNAF+WYT+LE E ID+WEQLEKEFL+RFYS R
Sbjct: 241 QLVRQFVRSLKGNAFEWYTNLEQEVIDTWEQLEKEFLDRFYSIR 283

[Close]

BLAST of Lag0005418.1 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 3.0e-82
Identity = 177/289 (61.25%), Postives = 218/289 (75.43%), Query Frame = 0


Query: 1   MTSEKTFSKIAASSNSYVGPITCSRSKETQHEDSQTPV-IANKMLRRMTESAQLEIAAAK 60
           MTS+   SK  A S+    P T SRS+E Q  +   P  +A  +  ++++  +  I   +
Sbjct: 1   MTSQGNTSK--ALSDIGKRPNTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKE 60

Query: 61  NLMLAKFVSSSQQPN-DTSSPDVMSVIMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIV 120
           N  + +  S S++ N +   P++MSV++TD  TSE+RMAE+EKK++ML+K VEE+D EI 
Sbjct: 61  NPAMDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIA 120

Query: 121 SLRNQMESRDVAESSQTPAIK--DKGKIIAQD-QSQHSTSIASLSVQQLQDMIMNSIRAQ 180
            L+N +ESRD AESS T  IK  +KGK I Q+ Q Q+STSIASLSVQQLQ+MI NSI+ Q
Sbjct: 121 LLKNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQ 180

Query: 181 YGGPTQNSLLYSKPYTKRIDNLRMPHGYQPPKFQQFDGKGNPKQHVAHFVETCENDGTRG 240
           YGGP Q   LYSKPYTKRIDN+RMPHGYQPPKFQQFDGKGNPKQHVAHF+ETCE  GTRG
Sbjct: 181 YGGPAQTFSLYSKPYTKRIDNMRMPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRG 240

Query: 241 DQLVRQFVRTLKGNAFDWYTDLEPETIDSWEQLEKEFLNRFYSCRALRS 285
           D LV+QFVRTLKGNAFDWYTDLEPE+IDSWEQLE++FLNRFYS R + S
Sbjct: 241 DLLVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVS 287

[Close]

BLAST of Lag0005418.1 vs. ExPASy TrEMBL
Match: A0A5A7SU65 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00940 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 3.9e-82
Identity = 172/284 (60.56%), Postives = 212/284 (74.65%), Query Frame = 0


Query: 1   MTSEKTFSKIAASSNSYVGPITCSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAKN 60
           M S+   SK +A+S+SY+G +T S  K +  E  Q  V+  K L ++ ES + EI    N
Sbjct: 1   MASKNAASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGEIIIRDN 60

Query: 61  LMLAKFVSSSQQPNDTSSPDVMSVIMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIVSL 120
            +      +S   +  S  +V+SV+M D  T+E  MA++E+KI+ L+K+VEE+D EI +L
Sbjct: 61  PLFNNSTPASNLSDKESHLEVVSVMMVDV-TAEATMAKMERKINFLMKVVEERDHEIAAL 120

Query: 121 RNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSTSIASLSVQQLQDMIMNSIRAQY 180
           ++QM++ + AESSQTP +K  DK K + Q+    Q S S+ASLSVQQLQDMI NSIRAQY
Sbjct: 121 KDQMKACETAESSQTPVVKATDKEKNVVQENQPQQQSVSVASLSVQQLQDMIENSIRAQY 180

Query: 181 GGPTQNSLLYSKPYTKRIDNLRMPHGYQPPKFQQFDGKGNPKQHVAHFVETCENDGTRGD 240
           GGP Q S +YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQH+AHFVETCEN G+RGD
Sbjct: 181 GGPPQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHIAHFVETCENAGSRGD 240

Query: 241 QLVRQFVRTLKGNAFDWYTDLEPETIDSWEQLEKEFLNRFYSCR 281
           QLVRQFVR+LKGNAF+WYTDLEPE IDSWEQLE EFLNRFYS R
Sbjct: 241 QLVRQFVRSLKGNAFEWYTDLEPEVIDSWEQLEIEFLNRFYSTR 283

[Close]

BLAST of Lag0005418.1 vs. ExPASy TrEMBL
Match: A0A5D3DIN4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00020 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 6.6e-82
Identity = 172/288 (59.72%), Postives = 214/288 (74.31%), Query Frame = 0


Query: 1   MTSEKTFSKIAASSNSYVGPITCSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAKN 60
           M S+K  SK +A+S+SY+G +T S  K +  E  Q  V+  K L ++ ES +  I    N
Sbjct: 1   MASKKVASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGRIIIRDN 60

Query: 61  LMLAKFVSSSQQPNDTSSPDVMSVIMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIVSL 120
            +      +S   +  S  +V+SV+M D  T+E  M E+EKKI+ L+K+VEE+D EI +L
Sbjct: 61  PLFNNSTPASNLSDKESHLEVVSVMMVDV-TTEATMVEMEKKINFLMKVVEERDHEIAAL 120

Query: 121 RNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSTSIASLSVQQLQDMIMNSIRAQY 180
           ++QM++ + AESS+TP +K  DKGK + Q+    Q S S+ASLSVQQLQDMI+NSIRAQY
Sbjct: 121 KDQMKAYETAESSKTPVVKATDKGKNVVQENQPQQQSISVASLSVQQLQDMIVNSIRAQY 180

Query: 181 GGPTQNSLLYSKPYTKRIDNLRMPHGYQPPKFQQFDGKGNPKQHVAHFVETCENDGTRGD 240
           GGP+Q S +YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQH+AHFVE CEN G+RGD
Sbjct: 181 GGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHIAHFVEKCENAGSRGD 240

Query: 241 QLVRQFVRTLKGNAFDWYTDLEPETIDSWEQLEKEFLNRFYSCRALRS 285
           QLVRQFVR+LKGNAF+WYTDLEPE IDSWEQLE EFLN FYS R + S
Sbjct: 241 QLVRQFVRSLKGNAFEWYTDLEPEVIDSWEQLEIEFLNCFYSTRRVVS 287

The following BLAST results are available for this feature:

BLAST of Lag0005418.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742199.1	2.0e-88	63.38	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]
XP_031735972.1	2.0e-88	63.38	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
XP_031739134.1	7.5e-88	63.03	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	7.5e-88	63.03	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]
XP_031737053.1	7.5e-88	63.03	uncharacterized protein LOC116402138 [Cucumis sativus]	[more]

BLAST of Lag0005418.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0005418.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BY54	5.8e-86	62.32	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3CD35	3.5e-83	60.56	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TZU9	3.0e-82	61.25	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5A7SU65	3.9e-82	60.56	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DIN4	6.6e-82	59.72	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Lag0005418.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 96..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 284..304
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 284..326
None	No IPR available	PANTHER	PTHR33223	FAMILY NOT NAMED	coord: 108..284

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0005418	Lag0005418	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0005418.1.exon2	Lag0005418.1.exon2	exon
Lag0005418.1.exon1	Lag0005418.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0005418.1	cds.Lag0005418.1_2	CDS
cds.Lag0005418.1	cds.Lag0005418.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0005418.1	Lag0005418.1-protein	polypeptide