Lag0004922.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0004922.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDNAJ heat shock family protein
Locationchr6: 8557313 .. 8558843 (-)
Sequence length627
RNA-Seq ExpressionLag0004922.1
SyntenyLag0004922.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACCAGCCGTTTTGCCTCAGATATTCAGGTTTTTAGTTTATCCACAATTTTTATTTTACTCAATTCTCCGAAATTTCTAATACAAACTATTTTATATGTTTGATATTTTGTAGATGGAGCTGTCATTATTTTTTATCGAAGCTGCAGAAGGATGCACAAAGCATTTGTTCTTTGATGCTTTGGTTCCCTGTGATTCTTGCTGTGAGTATGGCTGGTTGTCTGCAAAACTCAATTAGTGTTGAGATATGAATACTGATTAATGCAAAAGTGTGGATTATGGCCTCACAAAGACACACACACAAAGAACTTTTATTGCACCTTAAGTAATGATATAGAGAATTTATTTTATGGAGAGTCTTTTAGTTGGACGGTTGCTAGAAGCCAATAAGGTGAACTCTGGGATATTTCATATTGAACATATAAATAGAGTATTTAAATTCTTATATCTTTAGACCCAGAATGTATGTTAAACTTTTAGTTTTTTCGTAATCAAAATGCAGTTACTCGTGCAAAGCAAGAACACTTTCTTTTTCTAATTTTCTCTTTCTTTTCTTCTTTGTAATCTTCTTTTACATGTGACTAGCCTTAATTTTGAATTGATTAATAGAAAACTATCAGTTCCCAGATGGAGCAAAAATCAGTTTGATGTGTTTGTCACAGTTGTCCACTTGTCCTGAAGAATCTGCTCTGACATTGCTAAATCATGATGATGCTGATTGCTTGAATTGCAATTTTATCTTATTGTCTTGTCACTTGTTCTTAACCTCAGTTTGTTTATTTCCAAAAAAGAGAAGAGTTTTAGCAATGTATTTCCTGTTTTAAGTTTATGGCCTTTTGGCTTTGTTTTAAATGGGCTTGACTATCCAGTAAATGCAACGAAAAGAAGTACTTGCTCTACTTGCAGAGGCTTAGGTAGAGTAAGTGTCTTCAACTCATAAATTACCTGCAAATCTGGAACCATGCAGTGTCAATTGTCTTGCTATTTTTTTTTTTCAGATTTGATTGGTTTAATTATCAGGTTACTATTCCTCCATTTACATCGACATGCACCACTTGCAAAGGATCGGGTCAAATCATTAAGGTTTGATGTATATTTCAAAATTTTTAGTTCTTTTAGATTTTCCTTTTCCATTCTATATTTCTTTGTTTTTCTTTTTTGTGAGCCTTAAAGAAATAGAATCTGTAATATGGCTCTAAGAGCAAACCTCCTCCCTAAGAAAGAAGATCTGGACGGATAGAATCCGTAATCTAGCTCTAAGAGCAAACTCCTCCCTAAGAAAGGGGATATGGATGGATAGAATCTGTAATATGGCTCTAAGAAAGGGGATATGGATGGATAAAATCTGTAATATGGCTCTAAGAGCAAACTCCTCCCTAAGAAAGGAGATATGGGAGGATAAAATCTGTAATCTAGCTCTAAGAGCAAACTCCTTGGTAAAGGGGATATGGGCAGATAGAATCCATAATCTGGCTCTAAGAGCAAACTCCTCCGTAAGAAAGGAGATATGGGCAGATAGAAATTCGTAA

mRNA sequence

ATGAGACCAGCCGTTTTGCCTCAGATATTCAGATGGAGCTGTCATTATTTTTTATCGAAGCTGCAGAAGGATGCACAAAGCATTTGTTCTTTGATGCTTTGGTTCCCTGTGATTCTTGCTTTGTCCACTTGTCCTGAAGAATCTGCTCTGACATTGCTAAATCATGATGATGCTGATTGCTTGAATTGCAATTTTATCTTATTGTCTTGTCACTTATTTGATTGGTTTAATTATCAGGTTACTATTCCTCCATTTACATCGACATGCACCACTTGCAAAGGATCGGGTCAAATCATTAAGCAAACCTCCTCCCTAAGAAAGAAGATCTGGACGGATAGAATCCGTAATCTAGCTCTAAGAGCAAACTCCTCCCTAAGAAAGGGGATATGGATGGATAGAATCTGTAATATGGCTCTAAGAAAGGGGATATGGATGGATAAAATCTGTAATATGGCTCTAAGAGCAAACTCCTCCCTAAGAAAGGAGATATGGGAGGATAAAATCTGTAATCTAGCTCTAAGAGCAAACTCCTTGGTAAAGGGGATATGGGCAGATAGAATCCATAATCTGGCTCTAAGAGCAAACTCCTCCGTAAGAAAGGAGATATGGGCAGATAGAAATTCGTAA

Coding sequence (CDS)

ATGAGACCAGCCGTTTTGCCTCAGATATTCAGATGGAGCTGTCATTATTTTTTATCGAAGCTGCAGAAGGATGCACAAAGCATTTGTTCTTTGATGCTTTGGTTCCCTGTGATTCTTGCTTTGTCCACTTGTCCTGAAGAATCTGCTCTGACATTGCTAAATCATGATGATGCTGATTGCTTGAATTGCAATTTTATCTTATTGTCTTGTCACTTATTTGATTGGTTTAATTATCAGGTTACTATTCCTCCATTTACATCGACATGCACCACTTGCAAAGGATCGGGTCAAATCATTAAGCAAACCTCCTCCCTAAGAAAGAAGATCTGGACGGATAGAATCCGTAATCTAGCTCTAAGAGCAAACTCCTCCCTAAGAAAGGGGATATGGATGGATAGAATCTGTAATATGGCTCTAAGAAAGGGGATATGGATGGATAAAATCTGTAATATGGCTCTAAGAGCAAACTCCTCCCTAAGAAAGGAGATATGGGAGGATAAAATCTGTAATCTAGCTCTAAGAGCAAACTCCTTGGTAAAGGGGATATGGGCAGATAGAATCCATAATCTGGCTCTAAGAGCAAACTCCTCCGTAAGAAAGGAGATATGGGCAGATAGAAATTCGTAA

Protein sequence

MRPAVLPQIFRWSCHYFLSKLQKDAQSICSLMLWFPVILALSTCPEESALTLLNHDDADCLNCNFILLSCHLFDWFNYQVTIPPFTSTCTTCKGSGQIIKQTSSLRKKIWTDRIRNLALRANSSLRKGIWMDRICNMALRKGIWMDKICNMALRANSSLRKEIWEDKICNLALRANSLVKGIWADRIHNLALRANSSVRKEIWADRNS
Homology
[Close]
BLAST of Lag0004922.1 vs. TAIR 10
Match: AT1G28210.1 (DNAJ heat shock family protein )

HSP 1 Score: 41.6 bits (96), Expect = 9.1e-04
Identity = 16/23 (69.57%), Postives = 21/23 (91.30%), Query Frame = 0 

Query: 79  QVTIPPFTSTCTTCKGSGQIIKQ 102
           +VTIPPFT++C TCKG+G IIK+
Sbjct: 211 RVTIPPFTASCQTCKGTGHIIKE 233

[Close]
BLAST of Lag0004922.1 vs. TAIR 10
Match: AT1G28210.2 (DNAJ heat shock family protein )

HSP 1 Score: 41.6 bits (96), Expect = 9.1e-04
Identity = 16/23 (69.57%), Postives = 21/23 (91.30%), Query Frame = 0 

Query: 79  QVTIPPFTSTCTTCKGSGQIIKQ 102
           +VTIPPFT++C TCKG+G IIK+
Sbjct: 211 RVTIPPFTASCQTCKGTGHIIKE 233

The following BLAST results are available for this feature:
BLAST of Lag0004922.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0004922.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0004922.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0004922.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G28210.19.1e-0469.57DNAJ heat shock family protein [more]
AT1G28210.29.1e-0469.57DNAJ heat shock family protein [more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0004922Lag0004922gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0004922.1.exon5Lag0004922.1.exon5exon
Lag0004922.1.exon4Lag0004922.1.exon4exon
Lag0004922.1.exon3Lag0004922.1.exon3exon
Lag0004922.1.exon2Lag0004922.1.exon2exon
Lag0004922.1.exon1Lag0004922.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0004922.1cds.Lag0004922.1_5CDS
cds.Lag0004922.1cds.Lag0004922.1_4CDS
cds.Lag0004922.1cds.Lag0004922.1_3CDS
cds.Lag0004922.1cds.Lag0004922.1_2CDS
cds.Lag0004922.1cds.Lag0004922.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0004922.1Lag0004922.1-proteinpolypeptide