Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGTCTCATATCTCGCTGGCGCGAACCGCCGATACTTGTCCGGCCCCATTCGCGCCAAAATCGATCCCCAAATCACCGCTTGATGAACGAAACCTAAAACCCATTCGTAATCAGACGGTAACCCGCCCCTGCTCTCCGATTCGCTCAATTTCCACGATCACGTTGATTTTCAATTTCACCCCTCCGATCATTCTCATATCGATCTTGCCATCAACATAGAGAAAGGTCGGTGGAGTTAATTTGTGTCAATCCTCACGAATCACCGAACGGAAAATTTTCGATTTTCAAATAAACCTACACAGAACGCGTTAAAGACGAACTGTTCTTTGCAATCTTCGTCCACTTTGCTCCGCCTTACGAGTTCAGGATTCCGGAGGTACGTACGATCTCATCTACTCTTAAAATCTTCATAAGTTTCTCATTTTCCGTATAAATTACCATTGTTTTTGTTCAGAATCAGCTCTCAGATCCCGCCTTGATCGCCTATCTTCACCAGAAATACTTTAAGGCTCGAGTTCTCTAG mRNA sequence ATGTCTCATATCTCGCTGGCGCGAACCGCCGATACTTGTCCGGCCCCATTCGCGCCAAAATCGATCCCCAAATCACCGCTTGATGAACGAAACCTAAAACCCATTCAACGCGTTAAAGACGAACTGTTCTTTGCAATCTTCGTCCACTTTGCTCCGCCTTACGAGTTCAGGATTCCGGAGAATCAGCTCTCAGATCCCGCCTTGATCGCCTATCTTCACCAGAAATACTTTAAGGCTCGAGTTCTCTAG Coding sequence (CDS) ATGTCTCATATCTCGCTGGCGCGAACCGCCGATACTTGTCCGGCCCCATTCGCGCCAAAATCGATCCCCAAATCACCGCTTGATGAACGAAACCTAAAACCCATTCAACGCGTTAAAGACGAACTGTTCTTTGCAATCTTCGTCCACTTTGCTCCGCCTTACGAGTTCAGGATTCCGGAGAATCAGCTCTCAGATCCCGCCTTGATCGCCTATCTTCACCAGAAATACTTTAAGGCTCGAGTTCTCTAG Protein sequence MSHISLARTADTCPAPFAPKSIPKSPLDERNLKPIQRVKDELFFAIFVHFAPPYEFRIPENQLSDPALIAYLHQKYFKARVL
Homology
BLAST of IVF0024557.1 vs. ExPASy TrEMBL
Match: A0A0A0LE68 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895760 PE=4 SV=1) HSP 1 Score: 137.1 bits (344), Expect = 3.3e-29 Identity = 72/100 (72.00%), Postives = 76/100 (76.00%), Query Frame = 0
Query: 1 MSHISLARTADTCPAPFAPKSIPKSPLDERNLKPI------------------QRVKDEL 60
M+HISLARTADTCPAPFAPK PKSPLD+RNLKPI QRVK EL
Sbjct: 1 MTHISLARTADTCPAPFAPKWSPKSPLDQRNLKPIRIRRYPAPALPFTQFPPSQRVKHEL 60
Query: 61 FFAIFVHFAPPYEFRIPENQLSDPALIAYLHQKYFKARVL 83
FFAIFVHFAPPYEFRIPENQLS+ LIAYLHQK F+ARVL
Sbjct: 61 FFAIFVHFAPPYEFRIPENQLSELDLIAYLHQKSFRARVL 100
BLAST of IVF0024557.1 vs. NCBI nr
Match: KGN60330.1 (hypothetical protein Csa_001095 [Cucumis sativus]) HSP 1 Score: 137 bits (344), Expect = 7.08e-40 Identity = 72/100 (72.00%), Postives = 76/100 (76.00%), Query Frame = 0
Query: 1 MSHISLARTADTCPAPFAPKSIPKSPLDERNLKPI------------------QRVKDEL 60
M+HISLARTADTCPAPFAPK PKSPLD+RNLKPI QRVK EL
Sbjct: 1 MTHISLARTADTCPAPFAPKWSPKSPLDQRNLKPIRIRRYPAPALPFTQFPPSQRVKHEL 60
Query: 61 FFAIFVHFAPPYEFRIPENQLSDPALIAYLHQKYFKARVL 82
FFAIFVHFAPPYEFRIPENQLS+ LIAYLHQK F+ARVL
Sbjct: 61 FFAIFVHFAPPYEFRIPENQLSELDLIAYLHQKSFRARVL 100
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LE68 | 3.3e-29 | 72.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895760 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN60330.1 | 7.08e-40 | 72.00 | hypothetical protein Csa_001095 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..25 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| IVF0024557 | IVF0024557 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| IVF0024557.1-exon | IVF0024557.1-exon-chr04:1169351..1169419 | exon |
| IVF0024557.1-exon | IVF0024557.1-exon-chr04:1169498..1169571 | exon |
| IVF0024557.1-exon | IVF0024557.1-exon-chr04:1169768..1169873 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| IVF0024557.1-cds | IVF0024557.1-cds-chr04:1169351..1169419 | CDS |
| IVF0024557.1-cds | IVF0024557.1-cds-chr04:1169498..1169571 | CDS |
| IVF0024557.1-cds | IVF0024557.1-cds-chr04:1169768..1169873 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| IVF0024557.1 | IVF0024557.1-protein | polypeptide |
|
