IVF0024557 (gene) Melon (IVF77) v1

Overview


Name	IVF0024557
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr04: 1169351 .. 1169873 (-)
RNA-Seq Expression	IVF0024557
Synteny	IVF0024557

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCATATCTCGCTGGCGCGAACCGCCGATACTTGTCCGGCCCCATTCGCGCCAAAATCGATCCCCAAATCACCGCTTGATGAACGAAACCTAAAACCCATTCGTAATCAGACGGTAACCCGCCCCTGCTCTCCGATTCGCTCAATTTCCACGATCACGTTGATTTTCAATTTCACCCCTCCGATCATTCTCATATCGATCTTGCCATCAACATAGAGAAAGGTCGGTGGAGTTAATTTGTGTCAATCCTCACGAATCACCGAACGGAAAATTTTCGATTTTCAAATAAACCTACACAGAACGCGTTAAAGACGAACTGTTCTTTGCAATCTTCGTCCACTTTGCTCCGCCTTACGAGTTCAGGATTCCGGAGGTACGTACGATCTCATCTACTCTTAAAATCTTCATAAGTTTCTCATTTTCCGTATAAATTACCATTGTTTTTGTTCAGAATCAGCTCTCAGATCCCGCCTTGATCGCCTATCTTCACCAGAAATACTTTAAGGCTCGAGTTCTCTAG

mRNA sequence

ATGTCTCATATCTCGCTGGCGCGAACCGCCGATACTTGTCCGGCCCCATTCGCGCCAAAATCGATCCCCAAATCACCGCTTGATGAACGAAACCTAAAACCCATTCAACGCGTTAAAGACGAACTGTTCTTTGCAATCTTCGTCCACTTTGCTCCGCCTTACGAGTTCAGGATTCCGGAGAATCAGCTCTCAGATCCCGCCTTGATCGCCTATCTTCACCAGAAATACTTTAAGGCTCGAGTTCTCTAG

Coding sequence (CDS)

ATGTCTCATATCTCGCTGGCGCGAACCGCCGATACTTGTCCGGCCCCATTCGCGCCAAAATCGATCCCCAAATCACCGCTTGATGAACGAAACCTAAAACCCATTCAACGCGTTAAAGACGAACTGTTCTTTGCAATCTTCGTCCACTTTGCTCCGCCTTACGAGTTCAGGATTCCGGAGAATCAGCTCTCAGATCCCGCCTTGATCGCCTATCTTCACCAGAAATACTTTAAGGCTCGAGTTCTCTAG

Protein sequence

MSHISLARTADTCPAPFAPKSIPKSPLDERNLKPIQRVKDELFFAIFVHFAPPYEFRIPENQLSDPALIAYLHQKYFKARVL

Homology

[Close]

BLAST of IVF0024557 vs. ExPASy TrEMBL
Match: A0A0A0LE68 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895760 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.3e-29
Identity = 72/100 (72.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 1   MSHISLARTADTCPAPFAPKSIPKSPLDERNLKPI------------------QRVKDEL 60
           M+HISLARTADTCPAPFAPK  PKSPLD+RNLKPI                  QRVK EL
Sbjct: 1   MTHISLARTADTCPAPFAPKWSPKSPLDQRNLKPIRIRRYPAPALPFTQFPPSQRVKHEL 60

Query: 61  FFAIFVHFAPPYEFRIPENQLSDPALIAYLHQKYFKARVL 83
           FFAIFVHFAPPYEFRIPENQLS+  LIAYLHQK F+ARVL
Sbjct: 61  FFAIFVHFAPPYEFRIPENQLSELDLIAYLHQKSFRARVL 100

[Close]

BLAST of IVF0024557 vs. NCBI nr
Match: KGN60330.1 (hypothetical protein Csa_001095 [Cucumis sativus])

HSP 1 Score: 137 bits (344), Expect = 7.08e-40
Identity = 72/100 (72.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 1   MSHISLARTADTCPAPFAPKSIPKSPLDERNLKPI------------------QRVKDEL 60
           M+HISLARTADTCPAPFAPK  PKSPLD+RNLKPI                  QRVK EL
Sbjct: 1   MTHISLARTADTCPAPFAPKWSPKSPLDQRNLKPIRIRRYPAPALPFTQFPPSQRVKHEL 60

Query: 61  FFAIFVHFAPPYEFRIPENQLSDPALIAYLHQKYFKARVL 82
           FFAIFVHFAPPYEFRIPENQLS+  LIAYLHQK F+ARVL
Sbjct: 61  FFAIFVHFAPPYEFRIPENQLSELDLIAYLHQKSFRARVL 100

The following BLAST results are available for this feature:

BLAST of IVF0024557 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0024557 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE68	3.3e-29	72.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895760 PE=4 SV=1	[more]

BLAST of IVF0024557 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60330.1	7.08e-40	72.00	hypothetical protein Csa_001095 [Cucumis sativus]	[more]

BLAST of IVF0024557 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024557.1	IVF0024557.1	mRNA