IVF0024467.2 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0024467.2
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ADP-ribosylation factor
Location	chr04: 15884710 .. 15884877 (-)
Sequence length	168
RNA-Seq Expression	IVF0024467.2
Synteny	IVF0024467.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTGACCTTCACCAAGCACTTCAGTAGGCTTTTTGCCAAGAAGGAGATGCAAATTTTGATGATTGGTCTTGATGCTGCTGGAAAGACCACGATTTTGAACAAGCTCAAGCTCGGAGAAATTGTCACAACTATTCCTACGATTGGTGTGTTCTTTCATTACTAA

mRNA sequence

ATGGGATTGACCTTCACCAAGCACTTCAGTAGGCTTTTTGCCAAGAAGGAGATGCAAATTTTGATGATTGGTCTTGATGCTGCTGGAAAGACCACGATTTTGAACAAGCTCAAGCTCGGAGAAATTGTCACAACTATTCCTACGATTGGTGTGTTCTTTCATTACTAA

Coding sequence (CDS)

ATGGGATTGACCTTCACCAAGCACTTCAGTAGGCTTTTTGCCAAGAAGGAGATGCAAATTTTGATGATTGGTCTTGATGCTGCTGGAAAGACCACGATTTTGAACAAGCTCAAGCTCGGAGAAATTGTCACAACTATTCCTACGATTGGTGTGTTCTTTCATTACTAA

Protein sequence

MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIGVFFHY

Homology

[Close]

BLAST of IVF0024467.2 vs. ExPASy Swiss-Prot
Match: Q06396 (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 90.5 bits (223), Expect = 6.4e-18
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1  MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIG 51
          MGLTFTK FSRLFAKKEM+ILM+GLDAAGKTTIL KLKLGEIVTTIPTIG
Sbjct: 1  MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50

[Close]

BLAST of IVF0024467.2 vs. ExPASy Swiss-Prot
Match: P51823 (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF PE=2 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 6.4e-18
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1  MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIG 51
          MGLTFTK FSRLFAKKEM+ILM+GLDAAGKTTIL KLKLGEIVTTIPTIG
Sbjct: 1  MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50

[Close]

BLAST of IVF0024467.2 vs. ExPASy Swiss-Prot
Match: P49076 (ADP-ribosylation factor OS=Zea mays OX=4577 GN=ARF1 PE=2 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 6.4e-18
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1  MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIG 51
          MGLTFTK FSRLFAKKEM+ILM+GLDAAGKTTIL KLKLGEIVTTIPTIG
Sbjct: 1  MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50

[Close]

BLAST of IVF0024467.2 vs. ExPASy Swiss-Prot
Match: P51822 (ADP-ribosylation factor 1 OS=Daucus carota OX=4039 GN=ARF1 PE=2 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 1.9e-17
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1  MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIG 51
          MGL+FTK FSRLFAKKEM+ILM+GLDAAGKTTIL KLKLGEIVTTIPTIG
Sbjct: 1  MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50

[Close]

BLAST of IVF0024467.2 vs. ExPASy Swiss-Prot
Match: O48920 (ADP-ribosylation factor OS=Vigna unguiculata OX=3917 GN=ARF PE=2 SV=3)

HSP 1 Score: 89.0 bits (219), Expect = 1.9e-17
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1  MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIG 51
          MGL+FTK FSRLFAKKEM+ILM+GLDAAGKTTIL KLKLGEIVTTIPTIG
Sbjct: 1  MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50

[Close]

BLAST of IVF0024467.2 vs. ExPASy TrEMBL
Match: A0A5D3C085 (ADP-ribosylation factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001420 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.7e-21
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIGVFFHY 56
          MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIGVFFHY
Sbjct: 1  MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIGVFFHY 55

[Close]

BLAST of IVF0024467.2 vs. ExPASy TrEMBL
Match: A0A6A4QLW6 (Putative small GTPase superfamily, ARF/SAR type, P-loop containing nucleoside triphosphate hydrolase OS=Lupinus albus OX=3870 GN=Lalb_Chr05g0228261 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIGVFFHY 56
          MGLTFTK FSRLFAKKEM+ILM+GLDAAGKTTIL KLKLGEIVTTIPTIG FFH+
Sbjct: 1  MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGKFFHF 55

[Close]

BLAST of IVF0024467.2 vs. ExPASy TrEMBL
Match: A0A5D3CPT1 (ADP-ribosylation factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold179G00030 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.5e-17
Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIGVFFHY 56
          MGLTFTK F+RLFAKKEMQILM+GLDAAGKTTIL KLKLGEI+TTIPT+GVFF Y
Sbjct: 1  MGLTFTKLFTRLFAKKEMQILMVGLDAAGKTTILYKLKLGEIITTIPTMGVFFDY 55

[Close]

BLAST of IVF0024467.2 vs. ExPASy TrEMBL
Match: A0A2P2LC40 (Putative adp-ribosylation factor 2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.5e-17
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 1  MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIGVFFH 55
          MGLTFTK FSRLFAKKEM+ILM+GLDAAGKTTIL KLKLGEIVTTIPTIG FFH
Sbjct: 1  MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGKFFH 54

[Close]

BLAST of IVF0024467.2 vs. ExPASy TrEMBL
Match: A0A6A4NZK4 (Putative small GTPase superfamily, ARF/SAR type, P-loop containing nucleoside triphosphate hydrolase OS=Lupinus albus OX=3870 GN=Lalb_Chr16g0392341 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.3e-17
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1  MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIGVFFHY 56
          MGLTFTK FSRLFAKKEM+ILM+GLDAAGKTTIL KLKLGEIVTTIPTIG F H+
Sbjct: 1  MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGKFLHF 55

[Close]

BLAST of IVF0024467.2 vs. NCBI nr
Match: KAA0051138.1 (ADP-ribosylation factor 2 [Cucumis melo var. makuwa] >TYK03759.1 ADP-ribosylation factor 2 [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (274), Expect = 3.08e-30
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIGVFFHY 55
          MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIGVFFHY
Sbjct: 1  MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIGVFFHY 55

[Close]

BLAST of IVF0024467.2 vs. NCBI nr
Match: KAE9614447.1 (putative small GTPase superfamily, ARF/SAR type, P-loop containing nucleoside triphosphate hydrolase [Lupinus albus])

HSP 1 Score: 97.1 bits (240), Expect = 5.56e-25
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIGVFFHY 55
          MGLTFTK FSRLFAKKEM+ILM+GLDAAGKTTIL KLKLGEIVTTIPTIG FFH+
Sbjct: 1  MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGKFFHF 55

[Close]

BLAST of IVF0024467.2 vs. NCBI nr
Match: KAA0036532.1 (ADP-ribosylation factor 2 [Cucumis melo var. makuwa] >TYK13450.1 ADP-ribosylation factor 2 [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 9.66e-25
Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIGVFFHY 55
          MGLTFTK F+RLFAKKEMQILM+GLDAAGKTTIL KLKLGEI+TTIPT+GVFF Y
Sbjct: 1  MGLTFTKLFTRLFAKKEMQILMVGLDAAGKTTILYKLKLGEIITTIPTMGVFFDY 55

[Close]

BLAST of IVF0024467.2 vs. NCBI nr
Match: KAE9597983.1 (putative small GTPase superfamily, ARF/SAR type, P-loop containing nucleoside triphosphate hydrolase [Lupinus albus])

HSP 1 Score: 94.7 bits (234), Expect = 7.41e-24
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1  MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIGVFFHY 55
          MGLTFTK FSRLFAKKEM+ILM+GLDAAGKTTIL KLKLGEIVTTIPTIG F H+
Sbjct: 1  MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGKFLHF 55

[Close]

BLAST of IVF0024467.2 vs. NCBI nr
Match: RYQ89430.1 (hypothetical protein Ahy_B09g096084 isoform E [Arachis hypogaea])

HSP 1 Score: 92.0 bits (227), Expect = 7.77e-23
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1  MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIGVFFHY 55
          MGLTFTK FSRLFAKKEM+ILM+GLDAAGKTTIL KLKLGEIVTTIPTIG+F  +
Sbjct: 1  MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGMFLPF 55

[Close]

BLAST of IVF0024467.2 vs. TAIR 10
Match: AT5G14670.1 (ADP-ribosylation factor A1B )

HSP 1 Score: 88.6 bits (218), Expect = 1.7e-18
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIG 51
          MGL FTK FSRLFAKKEM+ILM+GLDAAGKTTIL KLKLGEIVTTIPTIG
Sbjct: 1  MGLNFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50

[Close]

BLAST of IVF0024467.2 vs. TAIR 10
Match: AT1G70490.1 (Ras-related small GTP-binding family protein )

HSP 1 Score: 87.0 bits (214), Expect = 5.0e-18
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIG 51
          MGL+F K FSRLFAKKEM+ILM+GLDAAGKTTIL KLKLGEIVTTIPTIG
Sbjct: 1  MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50

[Close]

BLAST of IVF0024467.2 vs. TAIR 10
Match: AT1G23490.1 (ADP-ribosylation factor 1 )

HSP 1 Score: 87.0 bits (214), Expect = 5.0e-18
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIG 51
          MGL+F K FSRLFAKKEM+ILM+GLDAAGKTTIL KLKLGEIVTTIPTIG
Sbjct: 1  MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50

[Close]

BLAST of IVF0024467.2 vs. TAIR 10
Match: AT1G10630.1 (ADP-ribosylation factor A1F )

HSP 1 Score: 87.0 bits (214), Expect = 5.0e-18
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIG 51
          MGL+F K FSRLFAKKEM+ILM+GLDAAGKTTIL KLKLGEIVTTIPTIG
Sbjct: 1  MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50

[Close]

BLAST of IVF0024467.2 vs. TAIR 10
Match: AT1G70490.3 (Ras-related small GTP-binding family protein )

HSP 1 Score: 87.0 bits (214), Expect = 5.0e-18
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MGLTFTKHFSRLFAKKEMQILMIGLDAAGKTTILNKLKLGEIVTTIPTIG 51
          MGL+F K FSRLFAKKEM+ILM+GLDAAGKTTIL KLKLGEIVTTIPTIG
Sbjct: 1  MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50

The following BLAST results are available for this feature:

BLAST of IVF0024467.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q06396	6.4e-18	92.00	ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g08134...	[more]
P51823	6.4e-18	92.00	ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF PE=2 S...	[more]
P49076	6.4e-18	92.00	ADP-ribosylation factor OS=Zea mays OX=4577 GN=ARF1 PE=2 SV=2	[more]
P51822	1.9e-17	90.00	ADP-ribosylation factor 1 OS=Daucus carota OX=4039 GN=ARF1 PE=2 SV=2	[more]
O48920	1.9e-17	90.00	ADP-ribosylation factor OS=Vigna unguiculata OX=3917 GN=ARF PE=2 SV=3	[more]

BLAST of IVF0024467.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C085	1.7e-21	100.00	ADP-ribosylation factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6A4QLW6	1.5e-17	89.09	Putative small GTPase superfamily, ARF/SAR type, P-loop containing nucleoside tr...	[more]
A0A5D3CPT1	2.5e-17	87.27	ADP-ribosylation factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A2P2LC40	2.5e-17	90.74	Putative adp-ribosylation factor 2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A6A4NZK4	7.3e-17	87.27	Putative small GTPase superfamily, ARF/SAR type, P-loop containing nucleoside tr...	[more]

BLAST of IVF0024467.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051138.1	3.08e-30	100.00	ADP-ribosylation factor 2 [Cucumis melo var. makuwa] >TYK03759.1 ADP-ribosylatio...	[more]
KAE9614447.1	5.56e-25	89.09	putative small GTPase superfamily, ARF/SAR type, P-loop containing nucleoside tr...	[more]
KAA0036532.1	9.66e-25	87.27	ADP-ribosylation factor 2 [Cucumis melo var. makuwa] >TYK13450.1 ADP-ribosylatio...	[more]
KAE9597983.1	7.41e-24	87.27	putative small GTPase superfamily, ARF/SAR type, P-loop containing nucleoside tr...	[more]
RYQ89430.1	7.77e-23	85.45	hypothetical protein Ahy_B09g096084 isoform E [Arachis hypogaea]	[more]

BLAST of IVF0024467.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14670.1	1.7e-18	90.00	ADP-ribosylation factor A1B	[more]
AT1G70490.1	5.0e-18	88.00	Ras-related small GTP-binding family protein	[more]
AT1G23490.1	5.0e-18	88.00	ADP-ribosylation factor 1	[more]
AT1G10630.1	5.0e-18	88.00	ADP-ribosylation factor A1F	[more]
AT1G70490.3	5.0e-18	88.00	Ras-related small GTP-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006689	Small GTPase superfamily, ARF/SAR type	PFAM	PF00025	Arf	coord: 6..51 e-value: 2.2E-15 score: 56.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 3..54 e-value: 1.1E-15 score: 59.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 14..54
None	No IPR available	PANTHER	PTHR11711	ADP RIBOSYLATION FACTOR-RELATED	coord: 1..51
None	No IPR available	PANTHER	PTHR11711:SF377	ADP RIBOSYLATION FACTOR	coord: 1..51

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0024467	IVF0024467	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0024467.2-exon	IVF0024467.2-exon-chr04:15884710..15884877	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0024467.2-cds	IVF0024467.2-cds-chr04:15884710..15884877	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0024467.2	IVF0024467.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding