IVF0023575.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0023575.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr05: 17130912 .. 17131238 (+)
Sequence length	327
RNA-Seq Expression	IVF0023575.1
Synteny	IVF0023575.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGTACTCTCGACGCACAAAAACGTCGGGAAAAGTAAGAAAATCGCTAGAAAAGGATATGCCAACGTTTTTCGTTGCGTCAGGCCGTACGTCGAGAAAACTGAGTCGAGAGAGGCATCGTCGACGCGTGAACAACACGGCTTTGAGAATGCCTCTCTCGACATCGTGTTTCTCGACGTCGTCGACGACGCTGGGAATACCTTTCTCTACGCTATTTTTGACGACGGAACCGCCGACATCGAGAATGCCTCTTTCGACGTATTTTTTGTCAACTCATATTGTAGCATCGAGAATGATATCTTCCGGCGTCTCGTTGCATCGTGA

mRNA sequence

ATGGGGGTACTCTCGACGCACAAAAACGTCGGGAAAAGTAAGAAAATCGCTAGAAAAGGATATGCCAACGTTTTTCGTTGCGTCAGGCCGTACGTCGAGAAAACTGAGTCGAGAGAGGCATCGTCGACGCGTGAACAACACGGCTTTGAGAATGCCTCTCTCGACATCGTGTTTCTCGACGTCGTCGACGACGCTGGGAATACCTTTCTCTACGCTATTTTTGACGACGGAACCGCCGACATCGAGAATGCCTCTTTCGACGTATTTTTTGTCAACTCATATTGTAGCATCGAGAATGATATCTTCCGGCGTCTCGTTGCATCGTGA

Coding sequence (CDS)

ATGGGGGTACTCTCGACGCACAAAAACGTCGGGAAAAGTAAGAAAATCGCTAGAAAAGGATATGCCAACGTTTTTCGTTGCGTCAGGCCGTACGTCGAGAAAACTGAGTCGAGAGAGGCATCGTCGACGCGTGAACAACACGGCTTTGAGAATGCCTCTCTCGACATCGTGTTTCTCGACGTCGTCGACGACGCTGGGAATACCTTTCTCTACGCTATTTTTGACGACGGAACCGCCGACATCGAGAATGCCTCTTTCGACGTATTTTTTGTCAACTCATATTGTAGCATCGAGAATGATATCTTCCGGCGTCTCGTTGCATCGTGA

Protein sequence

MGVLSTHKNVGKSKKIARKGYANVFRCVRPYVEKTESREASSTREQHGFENASLDIVFLDVVDDAGNTFLYAIFDDGTADIENASFDVFFVNSYCSIENDIFRRLVAS

Homology

[Close]

BLAST of IVF0023575.1 vs. ExPASy TrEMBL
Match: A0A5A7T5J5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00030 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.8e-20
Identity = 58/95 (61.05%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 3   VLSTHKNVGKSKKIARKGYANVFRCVRPYVEKTESREASSTREQHGFENASLDIVFLDVV 62
           VL THKN+ +S+KI  KGY +VFR VRPYV KTES EAS TREQH   NAS D+VF D V
Sbjct: 10  VLPTHKNIRESEKIVGKGYTDVFRWVRPYVGKTESGEASPTREQHSVGNASPDVVFPDDV 69

Query: 63  DDAGNTFLYAIFDDGTADIENASFDVFFVNSYCSI 98
           D   NT L  +F D T  +ENAS DV F+NSY S+
Sbjct: 70  DGVKNTSLDTLFGDETVGVENASPDVIFINSYGSV 104

[Close]

BLAST of IVF0023575.1 vs. ExPASy TrEMBL
Match: A0A5A7UKH4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00210 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-17
Identity = 58/103 (56.31%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 7   HKNVGKSKKIARKGYANVFRCVRPYVEKTESREASSTREQHGFENASLDIVFLDVVDDAG 66
           HKNVG+S+KI  KGYA++FR V  +V K+E  EA  TR+QHG  NAS D+VFLDV+DD  
Sbjct: 2   HKNVGESEKIVGKGYADIFRGVGSHVGKSELGEAFLTRDQHGVGNASSDVVFLDVIDDVK 61

Query: 67  -NTFLYAIFDDGTADIENASFDVFFVNSYCSIENDIFRRLVAS 109
            NT   AIF D    I  +S DV F +SY SI ND FRR  AS
Sbjct: 62  INTSPDAIFGDEITSIGKSSPDVVFSDSYRSIGNDFFRRFCAS 104

[Close]

BLAST of IVF0023575.1 vs. ExPASy TrEMBL
Match: A0A5A7V224 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00470 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.0e-15
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 7   HKNVGKSKKIARKGYANVFRCVRPYVEKTESREASSTREQHGFENASLDIVFLDVVDDAG 66
           HKNVG+S+ I RKGY +VFR V P V K+ES EA  TREQHG  NAS D+VF D V+   
Sbjct: 2   HKNVGESENIVRKGYTDVFRSVGPPVRKSESGEAFLTREQHGIGNASPDVVFPDAVE--- 61

Query: 67  NTFLYAIFDDGTADIENASFDVFFVNSYCSIENDIF 103
           NT L  +F + T  +  +S DV F +SY S+ ND F
Sbjct: 62  NTSLDVVFGNETTGVGKSSPDVVFFDSYRSVGNDFF 94

[Close]

BLAST of IVF0023575.1 vs. ExPASy TrEMBL
Match: A0A5D3DSF9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00590 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.9e-15
Identity = 54/92 (58.70%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 2  GVLSTHKNVGKSKKIARKGYANVFRCVRPYVEKTESREASSTREQHGFENASLDIVFLDV 61
          GVLSTHKN+ +SKKI  +GY +VF  V PYV K ES EA ST EQHG  NAS      D 
Sbjct: 11 GVLSTHKNIEESKKIVGEGYVDVFCGVGPYVRKIESGEAFSTHEQHGVGNAS-----PDD 70

Query: 62 VDDAGNTFLYAIFDDGTADIENASFDVFFVNS 94
          VD  GNT+  AIF D T  I N S DVFF NS
Sbjct: 71 VDGVGNTYPDAIFGDQTTGIGNTSPDVFFANS 97

[Close]

BLAST of IVF0023575.1 vs. ExPASy TrEMBL
Match: A0A5A7VC74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2774G00090 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.5e-08
Identity = 41/86 (47.67%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 2   GVLSTHKNVGKSKKIARKGYANVFRCVRPYVEKTESREASSTREQHGFENASLDIVFLDV 61
           GVL TH       KI  KGYA++F  V PYV KTES+EA  T EQHG  NA  D+VF D 
Sbjct: 119 GVLPTH-------KIVEKGYADIFCGVGPYVGKTESKEAFPTLEQHGIGNAYPDVVFPDD 178

Query: 62  VDDAGNTFLYAIFDDGTADIENASFD 88
            D   NT    ++ D TA + N + D
Sbjct: 179 ADGVENTSPNPVYCDRTAGVRNVTPD 197

[Close]

BLAST of IVF0023575.1 vs. NCBI nr
Match: KAA0037416.1 (hypothetical protein E6C27_scaffold278G001280 [Cucumis melo var. makuwa] >TYJ97498.1 hypothetical protein E5676_scaffold85G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (262), Expect = 6.88e-27
Identity = 58/95 (61.05%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 3   VLSTHKNVGKSKKIARKGYANVFRCVRPYVEKTESREASSTREQHGFENASLDIVFLDVV 62
           VL THKN+ +S+KI  KGY +VFR VRPYV KTES EAS TREQH   NAS D+VF D V
Sbjct: 10  VLPTHKNIRESEKIVGKGYTDVFRWVRPYVGKTESGEASPTREQHSVGNASPDVVFPDDV 69

Query: 63  DDAGNTFLYAIFDDGTADIENASFDVFFVNSYCSI 97
           D   NT L  +F D T  +ENAS DV F+NSY S+
Sbjct: 70  DGVKNTSLDTLFGDETVGVENASPDVIFINSYGSV 104

[Close]

BLAST of IVF0023575.1 vs. NCBI nr
Match: KAA0055548.1 (hypothetical protein E6C27_scaffold222G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 2.27e-23
Identity = 58/103 (56.31%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 7   HKNVGKSKKIARKGYANVFRCVRPYVEKTESREASSTREQHGFENASLDIVFLDVVDDAG 66
           HKNVG+S+KI  KGYA++FR V  +V K+E  EA  TR+QHG  NAS D+VFLDV+DD  
Sbjct: 2   HKNVGESEKIVGKGYADIFRGVGSHVGKSELGEAFLTRDQHGVGNASSDVVFLDVIDDVK 61

Query: 67  -NTFLYAIFDDGTADIENASFDVFFVNSYCSIENDIFRRLVAS 108
            NT   AIF D    I  +S DV F +SY SI ND FRR  AS
Sbjct: 62  INTSPDAIFGDEITSIGKSSPDVVFSDSYRSIGNDFFRRFCAS 104

[Close]

BLAST of IVF0023575.1 vs. NCBI nr
Match: KAA0060536.1 (hypothetical protein E6C27_scaffold22G003970 [Cucumis melo var. makuwa] >TYK00779.1 hypothetical protein E5676_scaffold420G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 3.55e-20
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 7   HKNVGKSKKIARKGYANVFRCVRPYVEKTESREASSTREQHGFENASLDIVFLDVVDDAG 66
           HKNVG+S+ I RKGY +VFR V P V K+ES EA  TREQHG  NAS D+VF D V+   
Sbjct: 2   HKNVGESENIVRKGYTDVFRSVGPPVRKSESGEAFLTREQHGIGNASPDVVFPDAVE--- 61

Query: 67  NTFLYAIFDDGTADIENASFDVFFVNSYCSIENDIF 102
           NT L  +F + T  +  +S DV F +SY S+ ND F
Sbjct: 62  NTSLDVVFGNETTGVGKSSPDVVFFDSYRSVGNDFF 94

[Close]

BLAST of IVF0023575.1 vs. NCBI nr
Match: KAA0067048.1 (hypothetical protein E6C27_scaffold38G00950 [Cucumis melo var. makuwa] >TYK26285.1 hypothetical protein E5676_scaffold14G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 5.77e-20
Identity = 54/92 (58.70%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 2  GVLSTHKNVGKSKKIARKGYANVFRCVRPYVEKTESREASSTREQHGFENASLDIVFLDV 61
          GVLSTHKN+ +SKKI  +GY +VF  V PYV K ES EA ST EQHG  NAS D V    
Sbjct: 11 GVLSTHKNIEESKKIVGEGYVDVFCGVGPYVRKIESGEAFSTHEQHGVGNASPDDV---- 70

Query: 62 VDDAGNTFLYAIFDDGTADIENASFDVFFVNS 93
           D  GNT+  AIF D T  I N S DVFF NS
Sbjct: 71 -DGVGNTYPDAIFGDQTTGIGNTSPDVFFANS 97

[Close]

BLAST of IVF0023575.1 vs. NCBI nr
Match: KAA0063199.1 (hypothetical protein E6C27_scaffold205G00060 [Cucumis melo var. makuwa] >TYK23494.1 hypothetical protein E5676_scaffold2774G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 3.16e-10
Identity = 41/86 (47.67%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 2   GVLSTHKNVGKSKKIARKGYANVFRCVRPYVEKTESREASSTREQHGFENASLDIVFLDV 61
           GVL THK       I  KGYA++F  V PYV KTES+EA  T EQHG  NA  D+VF D 
Sbjct: 119 GVLPTHK-------IVEKGYADIFCGVGPYVGKTESKEAFPTLEQHGIGNAYPDVVFPDD 178

Query: 62  VDDAGNTFLYAIFDDGTADIENASFD 87
            D   NT    ++ D TA + N + D
Sbjct: 179 ADGVENTSPNPVYCDRTAGVRNVTPD 197

The following BLAST results are available for this feature:

BLAST of IVF0023575.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0023575.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T5J5	2.8e-20	61.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UKH4	1.7e-17	56.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V224	6.0e-15	53.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DSF9	7.9e-15	58.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VC74	2.5e-08	47.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0023575.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037416.1	6.88e-27	61.05	hypothetical protein E6C27_scaffold278G001280 [Cucumis melo var. makuwa] >TYJ974...	[more]
KAA0055548.1	2.27e-23	56.31	hypothetical protein E6C27_scaffold222G00210 [Cucumis melo var. makuwa]	[more]
KAA0060536.1	3.55e-20	53.13	hypothetical protein E6C27_scaffold22G003970 [Cucumis melo var. makuwa] >TYK0077...	[more]
KAA0067048.1	5.77e-20	58.70	hypothetical protein E6C27_scaffold38G00950 [Cucumis melo var. makuwa] >TYK26285...	[more]
KAA0063199.1	3.16e-10	47.67	hypothetical protein E6C27_scaffold205G00060 [Cucumis melo var. makuwa] >TYK2349...	[more]

BLAST of IVF0023575.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0023575	IVF0023575	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0023575.1-exon	IVF0023575.1-exon-chr05:17130912..17131238	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0023575.1-cds	IVF0023575.1-cds-chr05:17130912..17131238	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0023575.1	IVF0023575.1-protein	polypeptide