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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGATCACTCATCACTTTTACCCAAAAACAGATGCCTCTGTTTACACTTTTTTCACTTCTCTCCTTCAACCCACCTTAAGCTCTTCTCTGTTTCCAGCTCATTTTCTTCTTCTTCCTTCCCCCATTATTCTTTTCCCAATTTTAGCATACTCTTCATTTTCCTTCGTTTTCTGCTCTAAATCTTCCTCTTTCCTACAAATCTTCACTTTATTCGTTCATTCATCTTCTGGGTCTTTGCCTTTTTTCATATACTACTTCCCCATCTCTCTAGTTTTTAGTCTTTTTGTATACAGATTATGA mRNA sequence ATGATCACTCATCACTTTTACCCAAAAACAGATGCCTCTGTTTACACTTTTTTCACTTCTCTCCTTCAACCCACCTTAAGCTCTTCTCTGTTTCCAGCTCATTTTCTTCTTCTTCCTTCCCCCATTATTCTTTTCCCAATTTTAGCATACTCTTCATTTTCCTTCGTTTTCTGCTCTAAATCTTCCTCTTTCCTACAAATCTTCACTTTATTCGTTCATTCATCTTCTGGGTCTTTGCCTTTTTTCATATACTACTTCCCCATCTCTCTAGTTTTTAGTCTTTTTGTATACAGATTATGA Coding sequence (CDS) ATGATCACTCATCACTTTTACCCAAAAACAGATGCCTCTGTTTACACTTTTTTCACTTCTCTCCTTCAACCCACCTTAAGCTCTTCTCTGTTTCCAGCTCATTTTCTTCTTCTTCCTTCCCCCATTATTCTTTTCCCAATTTTAGCATACTCTTCATTTTCCTTCGTTTTCTGCTCTAAATCTTCCTCTTTCCTACAAATCTTCACTTTATTCGTTCATTCATCTTCTGGGTCTTTGCCTTTTTTCATATACTACTTCCCCATCTCTCTAGTTTTTAGTCTTTTTGTATACAGATTATGA Protein sequence MITHHFYPKTDASVYTFFTSLLQPTLSSSLFPAHFLLLPSPIILFPILAYSSFSFVFCSKSSSFLQIFTLFVHSSSGSLPFFIYYFPISLVFSLFVYRL
Homology
BLAST of IVF0022652.1 vs. ExPASy TrEMBL
Match: A0A0A0L7Z1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G444580 PE=4 SV=1) HSP 1 Score: 172.2 bits (435), Expect = 1.1e-39 Identity = 90/99 (90.91%), Postives = 94/99 (94.95%), Query Frame = 0
Query: 1 MITHHFYPKTDASVYTFFTSLLQPTLSSSLFPAHFLLLPSPIILFPILAYSSFSFVFCSK 60
MITHHFYPKTDASVYTFFTSLL PTL+ SLFPAHFLLLPSPIILFPILAYSSFSFVFCSK
Sbjct: 1 MITHHFYPKTDASVYTFFTSLLHPTLTPSLFPAHFLLLPSPIILFPILAYSSFSFVFCSK 60
Query: 61 SSSFLQIFTLFVHSSSGSLPFFIYYFPISLVFSLFVYRL 100
SS FLQIFT F+HSSSGS PFFIY+FPISL+FSLFVYRL
Sbjct: 61 SSCFLQIFTFFIHSSSGSFPFFIYFFPISLLFSLFVYRL 99
BLAST of IVF0022652.1 vs. NCBI nr
Match: KGN58030.1 (hypothetical protein Csa_011207 [Cucumis sativus]) HSP 1 Score: 172 bits (436), Expect = 1.29e-53 Identity = 90/99 (90.91%), Postives = 94/99 (94.95%), Query Frame = 0
Query: 1 MITHHFYPKTDASVYTFFTSLLQPTLSSSLFPAHFLLLPSPIILFPILAYSSFSFVFCSK 60
MITHHFYPKTDASVYTFFTSLL PTL+ SLFPAHFLLLPSPIILFPILAYSSFSFVFCSK
Sbjct: 1 MITHHFYPKTDASVYTFFTSLLHPTLTPSLFPAHFLLLPSPIILFPILAYSSFSFVFCSK 60
Query: 61 SSSFLQIFTLFVHSSSGSLPFFIYYFPISLVFSLFVYRL 99
SS FLQIFT F+HSSSGS PFFIY+FPISL+FSLFVYRL
Sbjct: 61 SSCFLQIFTFFIHSSSGSFPFFIYFFPISLLFSLFVYRL 99
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L7Z1 | 1.1e-39 | 90.91 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G444580 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN58030.1 | 1.29e-53 | 90.91 | hypothetical protein Csa_011207 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| IVF0022652 | IVF0022652 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| IVF0022652.1-exon | IVF0022652.1-exon-chr04:15168400..15168699 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| IVF0022652.1-cds | IVF0022652.1-cds-chr04:15168400..15168699 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| IVF0022652.1 | IVF0022652.1-protein | polypeptide |
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
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