IVF0022652 (gene) Melon (IVF77) v1

Overview
NameIVF0022652
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr04: 15168400 .. 15168699 (-)
RNA-Seq ExpressionIVF0022652
SyntenyIVF0022652
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCACTCATCACTTTTACCCAAAAACAGATGCCTCTGTTTACACTTTTTTCACTTCTCTCCTTCAACCCACCTTAAGCTCTTCTCTGTTTCCAGCTCATTTTCTTCTTCTTCCTTCCCCCATTATTCTTTTCCCAATTTTAGCATACTCTTCATTTTCCTTCGTTTTCTGCTCTAAATCTTCCTCTTTCCTACAAATCTTCACTTTATTCGTTCATTCATCTTCTGGGTCTTTGCCTTTTTTCATATACTACTTCCCCATCTCTCTAGTTTTTAGTCTTTTTGTATACAGATTATGA

mRNA sequence

ATGATCACTCATCACTTTTACCCAAAAACAGATGCCTCTGTTTACACTTTTTTCACTTCTCTCCTTCAACCCACCTTAAGCTCTTCTCTGTTTCCAGCTCATTTTCTTCTTCTTCCTTCCCCCATTATTCTTTTCCCAATTTTAGCATACTCTTCATTTTCCTTCGTTTTCTGCTCTAAATCTTCCTCTTTCCTACAAATCTTCACTTTATTCGTTCATTCATCTTCTGGGTCTTTGCCTTTTTTCATATACTACTTCCCCATCTCTCTAGTTTTTAGTCTTTTTGTATACAGATTATGA

Coding sequence (CDS)

ATGATCACTCATCACTTTTACCCAAAAACAGATGCCTCTGTTTACACTTTTTTCACTTCTCTCCTTCAACCCACCTTAAGCTCTTCTCTGTTTCCAGCTCATTTTCTTCTTCTTCCTTCCCCCATTATTCTTTTCCCAATTTTAGCATACTCTTCATTTTCCTTCGTTTTCTGCTCTAAATCTTCCTCTTTCCTACAAATCTTCACTTTATTCGTTCATTCATCTTCTGGGTCTTTGCCTTTTTTCATATACTACTTCCCCATCTCTCTAGTTTTTAGTCTTTTTGTATACAGATTATGA

Protein sequence

MITHHFYPKTDASVYTFFTSLLQPTLSSSLFPAHFLLLPSPIILFPILAYSSFSFVFCSKSSSFLQIFTLFVHSSSGSLPFFIYYFPISLVFSLFVYRL
Homology
[Close]
BLAST of IVF0022652 vs. ExPASy TrEMBL
Match: A0A0A0L7Z1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G444580 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.1e-39
Identity = 90/99 (90.91%), Postives = 94/99 (94.95%), Query Frame = 0 

Query: 1   MITHHFYPKTDASVYTFFTSLLQPTLSSSLFPAHFLLLPSPIILFPILAYSSFSFVFCSK 60
           MITHHFYPKTDASVYTFFTSLL PTL+ SLFPAHFLLLPSPIILFPILAYSSFSFVFCSK
Sbjct: 1   MITHHFYPKTDASVYTFFTSLLHPTLTPSLFPAHFLLLPSPIILFPILAYSSFSFVFCSK 60

Query: 61  SSSFLQIFTLFVHSSSGSLPFFIYYFPISLVFSLFVYRL 100
           SS FLQIFT F+HSSSGS PFFIY+FPISL+FSLFVYRL
Sbjct: 61  SSCFLQIFTFFIHSSSGSFPFFIYFFPISLLFSLFVYRL 99

[Close]
BLAST of IVF0022652 vs. NCBI nr
Match: KGN58030.1 (hypothetical protein Csa_011207 [Cucumis sativus])

HSP 1 Score: 172 bits (436), Expect = 1.29e-53
Identity = 90/99 (90.91%), Postives = 94/99 (94.95%), Query Frame = 0 

Query: 1  MITHHFYPKTDASVYTFFTSLLQPTLSSSLFPAHFLLLPSPIILFPILAYSSFSFVFCSK 60
          MITHHFYPKTDASVYTFFTSLL PTL+ SLFPAHFLLLPSPIILFPILAYSSFSFVFCSK
Sbjct: 1  MITHHFYPKTDASVYTFFTSLLHPTLTPSLFPAHFLLLPSPIILFPILAYSSFSFVFCSK 60

Query: 61 SSSFLQIFTLFVHSSSGSLPFFIYYFPISLVFSLFVYRL 99
          SS FLQIFT F+HSSSGS PFFIY+FPISL+FSLFVYRL
Sbjct: 61 SSCFLQIFTFFIHSSSGSFPFFIYFFPISLLFSLFVYRL 99

The following BLAST results are available for this feature:
BLAST of IVF0022652 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0022652 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7Z11.1e-3990.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G444580 PE=4 SV=1[more]
BLAST of IVF0022652 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58030.11.29e-5390.91hypothetical protein Csa_011207 [Cucumis sativus][more]
BLAST of IVF0022652 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0022652.1IVF0022652.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane