IVF0019909.2 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0019909.2
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Stress response protein NST1-like
Location	chr04: 18291509 .. 18291736 (-)
Sequence length	228
RNA-Seq Expression	IVF0019909.2
Synteny	IVF0019909.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAAACTGGTGAAAATCCAAACCACCAAGGAAAAAAAACAAGAAATGCTCGCAGACCTGAGCGGGCAAGTGAAGAGTGTGGTAGTAAGAAATAAGGCTGCCAAAATGCAAAAGGTTGACTGCTTAGAGATTGTAGTGAAAGAGTTTGACAAAGAAATTGAGAAGATGAGCCATCTAGAGCCAAAACCACAACTTAAAGAGCAAGGGCTTGTCTATGTCGCATAA

mRNA sequence

ATGACCAAACTGGTGAAAATCCAAACCACCAAGGAAAAAAAACAAGAAATGCTCGCAGACCTGAGCGGGCAAGTGAAGAGTGTGGTAGTAAGAAATAAGGCTGCCAAAATGCAAAAGGTTGACTGCTTAGAGATTGTAGTGAAAGAGTTTGACAAAGAAATTGAGAAGATGAGCCATCTAGAGCCAAAACCACAACTTAAAGAGCAAGGGCTTGTCTATGTCGCATAA

Coding sequence (CDS)

ATGACCAAACTGGTGAAAATCCAAACCACCAAGGAAAAAAAACAAGAAATGCTCGCAGACCTGAGCGGGCAAGTGAAGAGTGTGGTAGTAAGAAATAAGGCTGCCAAAATGCAAAAGGTTGACTGCTTAGAGATTGTAGTGAAAGAGTTTGACAAAGAAATTGAGAAGATGAGCCATCTAGAGCCAAAACCACAACTTAAAGAGCAAGGGCTTGTCTATGTCGCATAA

Protein sequence

MTKLVKIQTTKEKKQEMLADLSGQVKSVVVRNKAAKMQKVDCLEIVVKEFDKEIEKMSHLEPKPQLKEQGLVYVA

Homology

[Close]

BLAST of IVF0019909.2 vs. ExPASy TrEMBL
Match: A0A5A7TBU7 (Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold279G00120 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 2   TKLVKIQTTKEKKQEMLADLSGQVKSVVVRNKAAKMQKVDCLEIVVKEFDKEIEKMSHLE 61
           TKL +IQTTK+KKQE LA LS QV+SVV R+K A+ Q+VD ++++V+EF +EIE MS L 
Sbjct: 154 TKLAEIQTTKKKKQETLASLSEQVESVVTRSKVAEHQEVDRVDVMVEEFSREIEGMSPLG 213

Query: 62  PKPQLKEQGLVYV 75
           P+P+ +E+GL  +
Sbjct: 214 PRPRPEEKGLTNI 226

[Close]

BLAST of IVF0019909.2 vs. ExPASy TrEMBL
Match: A0A5D3DQE7 (Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00740 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 2   TKLVKIQTTKEKKQEMLADLSGQVKSVVVRNKAAKMQKVDCLEIVVKEFDKEIEKMSHLE 61
           TKL +IQTTK+KKQE LA LS QV+SVV R+K A+ Q+VD ++++V+EF +EIE MS L 
Sbjct: 123 TKLAEIQTTKKKKQETLASLSEQVESVVTRSKVAEHQEVDRVDVMVEEFSREIEGMSPLG 182

Query: 62  PKPQLKEQGLVYV 75
           P+P+ +E+GL  +
Sbjct: 183 PRPRPEEKGLTNI 195

[Close]

BLAST of IVF0019909.2 vs. ExPASy TrEMBL
Match: A0A5D3BXZ2 (Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00240 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.8e-10
Identity = 43/74 (58.11%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 2   TKLVKIQTTKEKKQEMLADLSGQVKSVVVRNKAAKMQKVDCLEIVVKEFDKEIEKMSHLE 61
           TKL +IQT K+KKQE LA+LS Q +SV  +NKA   Q+V+ LE+VV+EF +EI++MS LE
Sbjct: 116 TKLSEIQTAKKKKQETLANLSEQAESVATKNKAVARQEVNHLEVVVEEFSQEIKRMSSLE 175

Query: 62  PKPQLKEQGLVYVA 76
           P+ + KE GLV VA
Sbjct: 176 PRLRPKETGLVSVA 189

[Close]

BLAST of IVF0019909.2 vs. ExPASy TrEMBL
Match: A0A5A7UBY9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00710 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.9e-10
Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 2   TKLVKIQTTKEKKQEMLADLSGQVKSVVVRNKAAKMQKVDCLEIVVKEFDKEIEKMSHLE 61
           TKL KIQT+K+KKQE L  LS QV SV  R K AK +KVDC+++VV+E ++EIE MS LE
Sbjct: 97  TKLAKIQTSKKKKQEKLTGLSEQVDSVAARCKVAKHEKVDCMDVVVEELNREIEGMSPLE 156

Query: 62  PKPQLKEQGLV 73
           P+ + KE  LV
Sbjct: 157 PRLRPKEPRLV 167

[Close]

BLAST of IVF0019909.2 vs. ExPASy TrEMBL
Match: A0A5D3CVJ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00630 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 2   TKLVKIQTTKEKKQEMLADLSGQVKSVVVRNKAAKMQKVDCLEIVVKEFDKEIEKMSHLE 61
           TKL KIQT+K+KKQE L  LS QV SV  R K AK +KVDCL+ VV+E ++EIE MS LE
Sbjct: 97  TKLAKIQTSKKKKQEKLTGLSEQVDSVAARCKVAKHEKVDCLDAVVEELNREIEGMSPLE 156

Query: 62  PKPQLKEQGLV 73
           P+ + KE  LV
Sbjct: 157 PRLRPKEPRLV 167

[Close]

BLAST of IVF0019909.2 vs. NCBI nr
Match: KAA0052868.1 (stress response protein NST1-like [Cucumis melo var. makuwa] >TYK04357.1 stress response protein NST1-like [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 3.01e-14
Identity = 43/74 (58.11%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 2   TKLVKIQTTKEKKQEMLADLSGQVKSVVVRNKAAKMQKVDCLEIVVKEFDKEIEKMSHLE 61
           TKL +IQT K+KKQE LA+LS Q +SV  +NKA   Q+V+ LE+VV+EF +EI++MS LE
Sbjct: 116 TKLSEIQTAKKKKQETLANLSEQAESVATKNKAVARQEVNHLEVVVEEFSQEIKRMSSLE 175

Query: 62  PKPQLKEQGLVYVA 75
           P+ + KE GLV VA
Sbjct: 176 PRLRPKETGLVSVA 189

[Close]

BLAST of IVF0019909.2 vs. NCBI nr
Match: KAA0053403.1 (hypothetical protein E6C27_scaffold428G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 7.96e-14
Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 2   TKLVKIQTTKEKKQEMLADLSGQVKSVVVRNKAAKMQKVDCLEIVVKEFDKEIEKMSHLE 61
           TKL KIQT+K+KKQE L  LS QV SV  R K AK +KVDC+++VV+E ++EIE MS LE
Sbjct: 97  TKLAKIQTSKKKKQEKLTGLSEQVDSVAARCKVAKHEKVDCMDVVVEELNREIEGMSPLE 156

Query: 62  PKPQLKEQGLV 72
           P+ + KE  LV
Sbjct: 157 PRLRPKEPRLV 167

[Close]

BLAST of IVF0019909.2 vs. NCBI nr
Match: TYK25768.1 (stress response protein NST1-like [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 1.29e-13
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 2   TKLVKIQTTKEKKQEMLADLSGQVKSVVVRNKAAKMQKVDCLEIVVKEFDKEIEKMSHLE 61
           TKL +IQTTK+KKQE LA LS QV+SVV R+K A+ Q+VD ++++V+EF +EIE MS L 
Sbjct: 123 TKLAEIQTTKKKKQETLASLSEQVESVVTRSKVAEHQEVDRVDVMVEEFSREIEGMSPLG 182

Query: 62  PKPQLKEQGLVYV 74
           P+P+ +E+GL  +
Sbjct: 183 PRPRPEEKGLTNI 195

[Close]

BLAST of IVF0019909.2 vs. NCBI nr
Match: KAA0038829.1 (stress response protein NST1-like [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 1.31e-13
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 2   TKLVKIQTTKEKKQEMLADLSGQVKSVVVRNKAAKMQKVDCLEIVVKEFDKEIEKMSHLE 61
           TKL +IQTTK+KKQE LA LS QV+SVV R+K A+ Q+VD ++++V+EF +EIE MS L 
Sbjct: 154 TKLAEIQTTKKKKQETLASLSEQVESVVTRSKVAEHQEVDRVDVMVEEFSREIEGMSPLG 213

Query: 62  PKPQLKEQGLVYV 74
           P+P+ +E+GL  +
Sbjct: 214 PRPRPEEKGLTNI 226

[Close]

BLAST of IVF0019909.2 vs. NCBI nr
Match: TYK15883.1 (hypothetical protein E5676_scaffold637G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 1.58e-13
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 2   TKLVKIQTTKEKKQEMLADLSGQVKSVVVRNKAAKMQKVDCLEIVVKEFDKEIEKMSHLE 61
           TKL KIQT+K+KKQE L  LS QV SV  R K AK +KVDCL+ VV+E ++EIE MS LE
Sbjct: 97  TKLAKIQTSKKKKQEKLTGLSEQVDSVAARCKVAKHEKVDCLDAVVEELNREIEGMSPLE 156

Query: 62  PKPQLKEQGLV 72
           P+ + KE  LV
Sbjct: 157 PRLRPKEPRLV 167

The following BLAST results are available for this feature:

BLAST of IVF0019909.2 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0019909.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TBU7	1.4e-10	56.16	Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DQE7	1.4e-10	56.16	Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BXZ2	1.8e-10	58.11	Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UBY9	6.9e-10	59.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CVJ5	1.2e-09	60.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0019909.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052868.1	3.01e-14	58.11	stress response protein NST1-like [Cucumis melo var. makuwa] >TYK04357.1 stress ...	[more]
KAA0053403.1	7.96e-14	59.15	hypothetical protein E6C27_scaffold428G00710 [Cucumis melo var. makuwa]	[more]
TYK25768.1	1.29e-13	56.16	stress response protein NST1-like [Cucumis melo var. makuwa]	[more]
KAA0038829.1	1.31e-13	56.16	stress response protein NST1-like [Cucumis melo var. makuwa]	[more]
TYK15883.1	1.58e-13	60.56	hypothetical protein E5676_scaffold637G00630 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0019909.2 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0019909	IVF0019909	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0019909.2-exon	IVF0019909.2-exon-chr04:18291509..18291736	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0019909.2-cds	IVF0019909.2-cds-chr04:18291509..18291736	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0019909.2	IVF0019909.2-protein	polypeptide