Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGGGCGGTGGTCGGCCGGTGAGTCTGGCTGAGTTAGGTGTTAGACTCGGCGGTGGAGGTGGCGGCGGCGAAAGATTGAAATTTAAAGGTTGTATTATGGGTTTTTGGCATCAGATGATTTTTCCGGTACGGCGGGTTTGGCTCGCCGTTTATGGCCGTCTAAAAGCTCGAAGAAATGGTCAGTTTTTTTCGTCCGTACACTATGTTTGTTTTTCTTTTTAATTTTAATTTGTTTGTTAGATTTAAGAACTTTAAAGGTAGTGTCAAATAAGTTGTTGAATTTTATTTTTATTAAATAGGATTTTGACTTATTTGATATTCATTGAGAAATGAAAAATAAAAAAGTATTAGATATAAAGTCAGAAGTGTAGAGTGTAGGATCTAATTTTCAAATGTGAATACGCTCTACTACTCTAGGCGTAAGGATATTAGATACAAAATGAGCCTAATTAAATCAATTCGAAATTAGAGATTTAATAATTCTCAACCCTACGTATTGTAAAAATAAAAAAAAAACAAATTAAAATTTTAATGGTTGAGCATTGAAGTCCAGCGTTTGATTCTCATTGGTCGACTCTATGTTACTGTTAAAGTAGTAATGAAAAACACTTTAAAAAGTTCATATACTCTAGGATTAGAATTAGAATTAGAATTAGAATTAGAATTAGGGTATGGTCTACACTCATTTTGCAGTTTTTTTTTTTTTTTAATTTGAGGTTGGTATTTTTTTCACCATTTTATTAAAAAAAGAATTAAATATGCTTAGAAGGTATAAGAAAACGAACTGCTTAAAAAAAATTAAAAACTTTCATTGCTTTCTCTCGTTGATATTTTATACAAAAGAAAAAAACCTCATAAGAAATATTACGTCATTAATCTCATTAAATTTTGTTATTTTATTCCAACTTCTATGGAAATTATAAATCTAGGGCGATATATAATTAAATTCTAGATGCAACAATTAAAAACGGACATTTTTGAATGAAATCATAAAGCAATTCAATTTCAATAAAAAGAAGTTAATATATATGTTTTTTAATATGTAAGAAATAACCATTAGTTTAATTTCTTCTTTAAATTTATATATATTTTTATAAAAAGAATAAATTATCTAAAAAGGTACAAGACACGTCAGCGATTAAATGGGTTTATATATAGTTGAAATTCCTTTAAGTCGGTAGAAGATTAAGCTCTAATCATAATTTAATTGAGTTTAAGGACATTCTAAAGAAATAATTATATTCATAAATAATAATAATAAAATTCAAGCGTGGGAAAAGATCCACTAAACCAACTTTCACTTTAGAAGGGAAAAAAGTAGCTACTAAAGAAATTCCTATAAAGAGATTTATAAATTCTTTTATTTTTCTTATTTCTTTATATTGTTAGTTATTATTTTCATTATTTTAATTTCTTGAACCAATTTTCTATAATCATGTGGATGAAATGCCATTTAAATGAAAATTTTCAATATTTTCTCAAAGCAAAAAAATATAAAAATTGAAAGAATTAGATTGGACGAATAAAAAAATCCTACCAATTAAATAAGGTTTATTAACTCATCATTTATGTCAATTCACATTTTCCACTTTTTAGAAATATCCAATAATAATTATTAGCTCAACTCTATGCTTGTATCGTCGACCAAACGTAGGTAGAATTATGTAGAACTAAATTTTACGAATTTGATTTTTTATCCTAAATAAAGATTCTTAATATTAGTTAATTTTTTAAAAAGAAAATTGACCTAAAAATTTGCACATGGTGAGAATTTAGATTAATGGATGGAAGTAAGTTTATTAGAGGTGGATTGGATAAACATCTCTTTCACACAAAGCAAAAAATTTTATGCCTCCAAGTCACAAAGCATTGTCAATGGCACAGAAAAGAGAGATTTAACGTCAAAAAATCACCCTCTTTAATTTCTTTTTGTGTTTCCAAATCAGAGATTAGATGCTTCCATCATGGAATCAGGTTCATATGGCTGACCCTTTTGGACCACTTCCCCTTGTTGGCCATCAAATTTAGGTGTTTGTTTATTTATTATTATTAGATAACATATAAATATTTCTGAATTTATATTTTAGAGTTTGATATAAATTAAATTTTAATTTTTAATTAAATTTCCATCTATGTTTGTTTTGTTTGAATTAGATAACACTTGGATAAGATTCTTAAAATAGGACTTTCCGCATTAAGTTATAGACTAATGGATGTTGCGAGAAGAAGTGATGATGTCATACATAGAAAGGAAGATAGACTCGTAAAATAACATATATAAATAGAGCTTTTGCATATTTTTTGTTACTCCCTCAACATGGTCTATATAGACACATAGCTACGTTCATGAATCCGATGCATTTCGATTGGAAAAGAATTAAGGTAGAAAACAAAAGAATTGGACTAAGGACTTGAACGAAAAACTTGCAATGTTACCCTAAAGAAAACAATATATATTACTAATTATTGTATATATGCATGCTTGAATTAATATTTCATATATTCTTCTAATATAATTCTTATGAAACTTTGGTTCAACAGATGAAGGATTGCTGAAGCTTCATGATGATGTAGAAACTTGTGGGTATCAAGATGTAAAGGTTATGTGGGAAATACTAAGGAGATCAGAAGCTGAATTAATAAATCATGATCCACAAATGAGGCGCAAACACAAGCCATTTTGGAAGGCTTTGGTGTGGTCTAACCATAACTCTAACTCATCCACTAATATACCAAAAATGACAAATTTTCCAACTTTTGGCCCTATTTCATAGGGAAGACAAAGTTCAAGTACTACTCTCCCCTTTCATAAAATGCATCAAACAAATAAATGTAAAAATGATCTCGATGTTGTTGTATTTTTCATTTGGCACTTTTAGGTCAAATTGTGTCGAGAGAGTGAATTGTTGTAAATAGAAATAATAATAATTGCTTCTAAAAGGTTTCCAAGAT
mRNA sequence
GTGGGCGGTGGTCGGCCGGTGAGTCTGGCTGAGTTAGGTGTTAGACTCGGCGGTGGAGGTGGCGGCGGCGAAAGATTGAAATTTAAAGGTTGTATTATGGGTTTTTGGCATCAGATGATTTTTCCGGTACGGCGGGTTTGGCTCGCCGTTTATGGCCGTCTAAAAGCTCGAAGAAATGATGAAGGATTGCTGAAGCTTCATGATGATGTAGAAACTTGTGGGTATCAAGATGTAAAGGTTATGTGGGAAATACTAAGGAGATCAGAAGCTGAATTAATAAATCATGATCCACAAATGAGGCGCAAACACAAGCCATTTTGGAAGGCTTTGGTGTGGTCTAACCATAACTCTAACTCATCCACTAATATACCAAAAATGACAAATTTTCCAACTTTTGGCCCTATTTCATAGGGAAGACAAAGTTCAAGTACTACTCTCCCCTTTCATAAAATGCATCAAACAAATAAATGTAAAAATGATCTCGATGTTGTTGTATTTTTCATTTGGCACTTTTAGGTCAAATTGTGTCGAGAGAGTGAATTGTTGTAAATAGAAATAATAATAATTGCTTCTAAAAGGTTTCCAAGAT
Coding sequence (CDS)
ATGGGTTTTTGGCATCAGATGATTTTTCCGGTACGGCGGGTTTGGCTCGCCGTTTATGGCCGTCTAAAAGCTCGAAGAAATGATGAAGGATTGCTGAAGCTTCATGATGATGTAGAAACTTGTGGGTATCAAGATGTAAAGGTTATGTGGGAAATACTAAGGAGATCAGAAGCTGAATTAATAAATCATGATCCACAAATGAGGCGCAAACACAAGCCATTTTGGAAGGCTTTGGTGTGGTCTAACCATAACTCTAACTCATCCACTAATATACCAAAAATGACAAATTTTCCAACTTTTGGCCCTATTTCATAG
Protein sequence
MGFWHQMIFPVRRVWLAVYGRLKARRNDEGLLKLHDDVETCGYQDVKVMWEILRRSEAELINHDPQMRRKHKPFWKALVWSNHNSNSSTNIPKMTNFPTFGPIS
Homology
BLAST of IVF0019307.1 vs. ExPASy TrEMBL
Match:
A0A0A0LD54 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710210 PE=4 SV=1)
HSP 1 Score: 214.9 bits (546), Expect = 1.6e-52
Identity = 101/104 (97.12%), Postives = 101/104 (97.12%), Query Frame = 0
Query: 1 MGFWHQMIFPVRRVWLAVYGRLKARRNDEGLLKLHDDVETCGYQDVKVMWEILRRSEAEL 60
MGFWHQMIFPVRRVWLAVYGRLKARRNDEGLLKLHDDVETCGYQDVKVMWEILRRSEAEL
Sbjct: 1 MGFWHQMIFPVRRVWLAVYGRLKARRNDEGLLKLHDDVETCGYQDVKVMWEILRRSEAEL 60
Query: 61 INHDPQMRRKHKPFWKALVWSNHNSNSSTNIPKMTNFPTFGPIS 105
INH QMRRKHKPFWKALVWSNHNSNSSTNIPKMTNFPTF PIS
Sbjct: 61 INHH-QMRRKHKPFWKALVWSNHNSNSSTNIPKMTNFPTFSPIS 103
BLAST of IVF0019307.1 vs. ExPASy TrEMBL
Match:
A0A6J1J0R9 (uncharacterized protein LOC111482415 OS=Cucurbita maxima OX=3661 GN=LOC111482415 PE=4 SV=1)
HSP 1 Score: 177.2 bits (448), Expect = 3.6e-41
Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = 0
Query: 1 MGFWHQMIFPVRRVWLAVYGRLKARRNDEGLLKLHDDVETCGYQDVKVMWEILRRSEAEL 60
MGFW Q+IFPVRRVWLAVYGRLKAR+NDEGLLKLHDDVETCGYQDVKVMWEIL++SEAEL
Sbjct: 1 MGFWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEILKQSEAEL 60
Query: 61 INHDPQMRRKHKPFWKALVWSNHNSNSSTNIPKMTNFPTFGPIS 105
INH Q +RKHK FWK +WSN NS+S+T+ +M FPTF PIS
Sbjct: 61 INHHHQPKRKHKRFWKDFLWSNPNSDSTTSTTEMMPFPTFSPIS 104
BLAST of IVF0019307.1 vs. ExPASy TrEMBL
Match:
A0A6J1F2W0 (uncharacterized protein LOC111441680 OS=Cucurbita moschata OX=3662 GN=LOC111441680 PE=4 SV=1)
HSP 1 Score: 177.2 bits (448), Expect = 3.6e-41
Identity = 82/104 (78.85%), Postives = 90/104 (86.54%), Query Frame = 0
Query: 1 MGFWHQMIFPVRRVWLAVYGRLKARRNDEGLLKLHDDVETCGYQDVKVMWEILRRSEAEL 60
MGFW Q+IFPVRRVWLAVYGRLKAR+NDEGLLKLHDDVETCGYQDVKVMWEIL++SEAEL
Sbjct: 1 MGFWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEILKQSEAEL 60
Query: 61 INHDPQMRRKHKPFWKALVWSNHNSNSSTNIPKMTNFPTFGPIS 105
INH Q RRKHKPFWK +WS NS+S+T+ KM FPTF IS
Sbjct: 61 INHHHQTRRKHKPFWKDFLWSIPNSDSTTSTTKMIPFPTFNSIS 104
BLAST of IVF0019307.1 vs. ExPASy TrEMBL
Match:
A0A6J1CR01 (uncharacterized protein LOC111013423 OS=Momordica charantia OX=3673 GN=LOC111013423 PE=4 SV=1)
HSP 1 Score: 137.1 bits (344), Expect = 4.1e-29
Identity = 60/89 (67.42%), Postives = 74/89 (83.15%), Query Frame = 0
Query: 1 MGFWHQMIFPVRRVWLAVYGRLKARRNDEGLLKLHDDVETCGYQDVKVMWEILRRSEAEL 60
M WH+MIFPVRRVWLAV R++AR+N GLLKLHDDVETCGY+DVKVMWE+LRRSE+EL
Sbjct: 1 MELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60
Query: 61 INHDPQMRRKHKPFWKALVWSNHNSNSST 90
+ H P +RK +PFW+ VWSNH + +S+
Sbjct: 61 VGHQP--KRKQRPFWRVSVWSNHAAAASS 87
BLAST of IVF0019307.1 vs. ExPASy TrEMBL
Match:
A0A6P5X7I2 (uncharacterized protein LOC111280444 OS=Durio zibethinus OX=66656 GN=LOC111280444 PE=4 SV=1)
HSP 1 Score: 136.3 bits (342), Expect = 7.1e-29
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 0
Query: 1 MGFWHQMIFPVRRVWLAVYGRLKARRNDEGLLKLHDDVETCGYQDVKVMWEILRRSEAEL 60
M WH+MIFPVRRVW AV R+KAR+N EGLLKLHDDV+TCGYQDV+VMWE+LRRSE+EL
Sbjct: 1 MDLWHKMIFPVRRVWFAVSSRVKARKNGEGLLKLHDDVQTCGYQDVQVMWEMLRRSESEL 60
Query: 61 INHDPQMRRKHKPFWKALVWSNHNSNSS 89
I + +RK +PFWK VWSNH S+SS
Sbjct: 61 IAAN-NPKRKQRPFWKGFVWSNHTSSSS 87
BLAST of IVF0019307.1 vs. NCBI nr
Match:
XP_004137647.1 (uncharacterized protein LOC101215661 [Cucumis sativus] >KGN58642.1 hypothetical protein Csa_002613 [Cucumis sativus])
HSP 1 Score: 215 bits (548), Expect = 1.47e-70
Identity = 101/104 (97.12%), Postives = 101/104 (97.12%), Query Frame = 0
Query: 1 MGFWHQMIFPVRRVWLAVYGRLKARRNDEGLLKLHDDVETCGYQDVKVMWEILRRSEAEL 60
MGFWHQMIFPVRRVWLAVYGRLKARRNDEGLLKLHDDVETCGYQDVKVMWEILRRSEAEL
Sbjct: 1 MGFWHQMIFPVRRVWLAVYGRLKARRNDEGLLKLHDDVETCGYQDVKVMWEILRRSEAEL 60
Query: 61 INHDPQMRRKHKPFWKALVWSNHNSNSSTNIPKMTNFPTFGPIS 104
INH QMRRKHKPFWKALVWSNHNSNSSTNIPKMTNFPTF PIS
Sbjct: 61 INHH-QMRRKHKPFWKALVWSNHNSNSSTNIPKMTNFPTFSPIS 103
BLAST of IVF0019307.1 vs. NCBI nr
Match:
KAG7018111.1 (hypothetical protein SDJN02_19979 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 181 bits (460), Expect = 4.04e-57
Identity = 82/104 (78.85%), Postives = 92/104 (88.46%), Query Frame = 0
Query: 1 MGFWHQMIFPVRRVWLAVYGRLKARRNDEGLLKLHDDVETCGYQDVKVMWEILRRSEAEL 60
MGFW Q+IFPVRRVWLAVYGRLKAR+NDEG+LKLHDDVETCGYQDVKVMWEIL++SEAEL
Sbjct: 1 MGFWRQIIFPVRRVWLAVYGRLKARKNDEGVLKLHDDVETCGYQDVKVMWEILKQSEAEL 60
Query: 61 INHDPQMRRKHKPFWKALVWSNHNSNSSTNIPKMTNFPTFGPIS 104
I+H Q RRKHKPFWK +WSN NS+S+T+ KM FPTF PIS
Sbjct: 61 IHHHQQTRRKHKPFWKDFLWSNPNSDSTTSTTKMMPFPTFSPIS 104
BLAST of IVF0019307.1 vs. NCBI nr
Match:
XP_022983947.1 (uncharacterized protein LOC111482415 [Cucurbita maxima])
HSP 1 Score: 177 bits (450), Expect = 1.36e-55
Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = 0
Query: 1 MGFWHQMIFPVRRVWLAVYGRLKARRNDEGLLKLHDDVETCGYQDVKVMWEILRRSEAEL 60
MGFW Q+IFPVRRVWLAVYGRLKAR+NDEGLLKLHDDVETCGYQDVKVMWEIL++SEAEL
Sbjct: 1 MGFWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEILKQSEAEL 60
Query: 61 INHDPQMRRKHKPFWKALVWSNHNSNSSTNIPKMTNFPTFGPIS 104
INH Q +RKHK FWK +WSN NS+S+T+ +M FPTF PIS
Sbjct: 61 INHHHQPKRKHKRFWKDFLWSNPNSDSTTSTTEMMPFPTFSPIS 104
BLAST of IVF0019307.1 vs. NCBI nr
Match:
XP_022934534.1 (uncharacterized protein LOC111441680 [Cucurbita moschata])
HSP 1 Score: 177 bits (450), Expect = 1.36e-55
Identity = 82/104 (78.85%), Postives = 90/104 (86.54%), Query Frame = 0
Query: 1 MGFWHQMIFPVRRVWLAVYGRLKARRNDEGLLKLHDDVETCGYQDVKVMWEILRRSEAEL 60
MGFW Q+IFPVRRVWLAVYGRLKAR+NDEGLLKLHDDVETCGYQDVKVMWEIL++SEAEL
Sbjct: 1 MGFWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEILKQSEAEL 60
Query: 61 INHDPQMRRKHKPFWKALVWSNHNSNSSTNIPKMTNFPTFGPIS 104
INH Q RRKHKPFWK +WS NS+S+T+ KM FPTF IS
Sbjct: 61 INHHHQTRRKHKPFWKDFLWSIPNSDSTTSTTKMIPFPTFNSIS 104
BLAST of IVF0019307.1 vs. NCBI nr
Match:
XP_022143553.1 (uncharacterized protein LOC111013423 [Momordica charantia])
HSP 1 Score: 137 bits (345), Expect = 9.87e-40
Identity = 60/89 (67.42%), Postives = 74/89 (83.15%), Query Frame = 0
Query: 1 MGFWHQMIFPVRRVWLAVYGRLKARRNDEGLLKLHDDVETCGYQDVKVMWEILRRSEAEL 60
M WH+MIFPVRRVWLAV R++AR+N GLLKLHDDVETCGY+DVKVMWE+LRRSE+EL
Sbjct: 1 MELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60
Query: 61 INHDPQMRRKHKPFWKALVWSNHNSNSST 89
+ H P +RK +PFW+ VWSNH + +S+
Sbjct: 61 VGHQP--KRKQRPFWRVSVWSNHAAAASS 87
BLAST of IVF0019307.1 vs. TAIR 10
Match:
AT5G43150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 59.3 bits (142), Expect = 2.1e-09
Identity = 27/77 (35.06%), Postives = 44/77 (57.14%), Query Frame = 0
Query: 3 FWHQMIFPVRRVWLAVYGRLKARRNDEGLLKLHDDVETCGYQDVKVMWEILRRSE-AELI 62
+W+ M FP RR+W R+ R + GLL+L DV +C Y+D+ +MW +L ++E +
Sbjct: 9 WWNTMAFPTRRIWNRFTVRVGFRHS--GLLRLEHDVSSCEYEDIHIMWNLLHKNEDLTRV 68
Query: 63 NHDPQMRRKHKPFWKAL 79
Q +++ KP W L
Sbjct: 69 PIQQQQQQRKKPCWNLL 83
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LD54 | 1.6e-52 | 97.12 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710210 PE=4 SV=1 | [more] |
A0A6J1J0R9 | 3.6e-41 | 77.88 | uncharacterized protein LOC111482415 OS=Cucurbita maxima OX=3661 GN=LOC111482415... | [more] |
A0A6J1F2W0 | 3.6e-41 | 78.85 | uncharacterized protein LOC111441680 OS=Cucurbita moschata OX=3662 GN=LOC1114416... | [more] |
A0A6J1CR01 | 4.1e-29 | 67.42 | uncharacterized protein LOC111013423 OS=Momordica charantia OX=3673 GN=LOC111013... | [more] |
A0A6P5X7I2 | 7.1e-29 | 70.45 | uncharacterized protein LOC111280444 OS=Durio zibethinus OX=66656 GN=LOC11128044... | [more] |
Match Name | E-value | Identity | Description | |
XP_004137647.1 | 1.47e-70 | 97.12 | uncharacterized protein LOC101215661 [Cucumis sativus] >KGN58642.1 hypothetical ... | [more] |
KAG7018111.1 | 4.04e-57 | 78.85 | hypothetical protein SDJN02_19979 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
XP_022983947.1 | 1.36e-55 | 77.88 | uncharacterized protein LOC111482415 [Cucurbita maxima] | [more] |
XP_022934534.1 | 1.36e-55 | 78.85 | uncharacterized protein LOC111441680 [Cucurbita moschata] | [more] |
XP_022143553.1 | 9.87e-40 | 67.42 | uncharacterized protein LOC111013423 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
AT5G43150.1 | 2.1e-09 | 35.06 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Type |
IVF0019307 | IVF0019307 | gene |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
IVF0019307.1-five_prime_utr | IVF0019307.1-five_prime_utr-chr04:24064015..24064110 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
IVF0019307.1-exon | IVF0019307.1-exon-chr04:24064015..24064192 | exon |
IVF0019307.1-exon | IVF0019307.1-exon-chr04:24066556..24066966 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
IVF0019307.1-cds | IVF0019307.1-cds-chr04:24064111..24064192 | CDS |
IVF0019307.1-cds | IVF0019307.1-cds-chr04:24066556..24066788 | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
IVF0019307.1-three_prime_utr | IVF0019307.1-three_prime_utr-chr04:24066789..24066966 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
IVF0019307.1 | IVF0019307.1-protein | polypeptide |