IVF0017305.2 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0017305.2
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein MNN4-like
Location	chr04: 9846719 .. 9846943 (-)
Sequence length	225
RNA-Seq Expression	IVF0017305.2
Synteny	IVF0017305.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAAACAAAGCTAAGGGAGCTGAAAAAGCTCCTTAGTCAGGTTGAGAAAGTAGCCCTCTCCGTGGAGAAAGGCAAAGACAAAGAAAATAATTTTGACGAGCATTGCGAGGAGTTTAAGAAAGAGATTGAGGAGTTAAGTCCTTTGCTGGACGAGATGGTAAGACCCGCCAAAAAGAGAAAAGTTGCGATGAAGAAGAAGACTTTAAGAGCGCAATTTTAG

mRNA sequence

ATGAAGGAAACAAAGCTAAGGGAGCTGAAAAAGCTCCTTAGTCAGGTTGAGAAAGTAGCCCTCTCCGTGGAGAAAGGCAAAGACAAAGAAAATAATTTTGACGAGCATTGCGAGGAGTTTAAGAAAGAGATTGAGGAGTTAAGTCCTTTGCTGGACGAGATGGTAAGACCCGCCAAAAAGAGAAAAGTTGCGATGAAGAAGAAGACTTTAAGAGCGCAATTTTAG

Coding sequence (CDS)

ATGAAGGAAACAAAGCTAAGGGAGCTGAAAAAGCTCCTTAGTCAGGTTGAGAAAGTAGCCCTCTCCGTGGAGAAAGGCAAAGACAAAGAAAATAATTTTGACGAGCATTGCGAGGAGTTTAAGAAAGAGATTGAGGAGTTAAGTCCTTTGCTGGACGAGATGGTAAGACCCGCCAAAAAGAGAAAAGTTGCGATGAAGAAGAAGACTTTAAGAGCGCAATTTTAG

Protein sequence

MKETKLRELKKLLSQVEKVALSVEKGKDKENNFDEHCEEFKKEIEELSPLLDEMVRPAKKRKVAMKKKTLRAQF

Homology

[Close]

BLAST of IVF0017305.2 vs. ExPASy TrEMBL
Match: A0A5A7TTT3 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold543G00540 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.6e-29
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MKETKLRELKKLLSQVEKVALSVEKGKDKENNFDEHCEEFKKEIEELSPLLDEMVRPAKK 60
          MKETKLRELKKLLSQVEKVALSVEKGKDKENNFDEHCEEFKKEIEELSPLLDEMVRPAKK
Sbjct: 1  MKETKLRELKKLLSQVEKVALSVEKGKDKENNFDEHCEEFKKEIEELSPLLDEMVRPAKK 60

Query: 61 RKVAMKKKTLRAQF 75
          RKVAMKKKTLRAQF
Sbjct: 61 RKVAMKKKTLRAQF 74

[Close]

BLAST of IVF0017305.2 vs. ExPASy TrEMBL
Match: A0A5D3BF32 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00380 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-18
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MKETKLRELKKLLSQVEKVALSVEKGKDKENNFDEHCEEFKKEIEELSPLLDEM 55
          MKETKLRELKKLLSQVEKVALSVEKGKDKENNFDEHCEEFKKEIEELSPLLDEM
Sbjct: 1  MKETKLRELKKLLSQVEKVALSVEKGKDKENNFDEHCEEFKKEIEELSPLLDEM 54

[Close]

BLAST of IVF0017305.2 vs. ExPASy TrEMBL
Match: A0A5A7TGV4 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00910 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.3e-12
Identity = 47/74 (63.51%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 2   KETKLRELKKLLSQVEKVALSVEKGKDKENNFDEHCEEFKKEIEELSPLLDEMV-RPAKK 61
           KE KLR+ ++LL++V+K+ALSVEKGK+KE  F+E  +EF+KEI+E SPL D +V RPAKK
Sbjct: 42  KEIKLRQPEELLNKVDKLALSVEKGKEKEKTFEEFYKEFEKEIDEFSPLEDNVVERPAKK 101

Query: 62  RKVAMKKKTLRAQF 75
           R V MKKK LR QF
Sbjct: 102 RNVTMKKKVLRDQF 115

[Close]

BLAST of IVF0017305.2 vs. ExPASy TrEMBL
Match: A0A5D3C2J1 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold572G00380 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.3e-12
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 2   KETKLRELKKLLSQVEKVALSVEKGKDKENNFDEHCEEFKKEIEELSPLLDEMVRPAKKR 61
           KE +LRE ++LL +VEKVA+  EKGK +E  F+EH EEF+KEI EL PL D+ +RPA KR
Sbjct: 72  KEIRLREQEELLGKVEKVAIFAEKGKGEEKTFEEHYEEFEKEINELIPLEDKAIRPATKR 131

Query: 62  KVAMKKKTLRAQF 75
           K+ MKKK LR +F
Sbjct: 132 KIMMKKKALREKF 144

[Close]

BLAST of IVF0017305.2 vs. ExPASy TrEMBL
Match: A0A5A7SUZ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00150 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.3e-12
Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 2   KETKLRELKKLLSQVEKVALSVEKGKDKENNFDEHCEEFKKEIEELSPLLDEMVRPAKKR 61
           KETKLRE ++LL +V+ VALS EK K +E NF+ H EEF+KEI++L PL ++++RPAKKR
Sbjct: 200 KETKLREREELLGKVDNVALSAEKDKCEEKNFEVHYEEFEKEIDKLCPLEEKVIRPAKKR 259

Query: 62  KVAMKKKTLRAQF 75
              MKKK LR QF
Sbjct: 260 TFTMKKKALRKQF 272

[Close]

BLAST of IVF0017305.2 vs. NCBI nr
Match: KAA0046474.1 (protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (338), Expect = 1.94e-39
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MKETKLRELKKLLSQVEKVALSVEKGKDKENNFDEHCEEFKKEIEELSPLLDEMVRPAKK 60
          MKETKLRELKKLLSQVEKVALSVEKGKDKENNFDEHCEEFKKEIEELSPLLDEMVRPAKK
Sbjct: 1  MKETKLRELKKLLSQVEKVALSVEKGKDKENNFDEHCEEFKKEIEELSPLLDEMVRPAKK 60

Query: 61 RKVAMKKKTLRAQF 74
          RKVAMKKKTLRAQF
Sbjct: 61 RKVAMKKKTLRAQF 74

[Close]

BLAST of IVF0017305.2 vs. NCBI nr
Match: TYJ97737.1 (protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (249), Expect = 7.33e-24
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MKETKLRELKKLLSQVEKVALSVEKGKDKENNFDEHCEEFKKEIEELSPLLDEM 54
          MKETKLRELKKLLSQVEKVALSVEKGKDKENNFDEHCEEFKKEIEELSPLLDEM
Sbjct: 1  MKETKLRELKKLLSQVEKVALSVEKGKDKENNFDEHCEEFKKEIEELSPLLDEM 54

[Close]

BLAST of IVF0017305.2 vs. NCBI nr
Match: KAA0041276.1 (protein MNN4-like [Cucumis melo var. makuwa] >TYK16072.1 protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 2.38e-16
Identity = 47/74 (63.51%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 2   KETKLRELKKLLSQVEKVALSVEKGKDKENNFDEHCEEFKKEIEELSPLLDEMV-RPAKK 61
           KE KLR+ ++LL++V+K+ALSVEKGK+KE  F+E  +EF+KEI+E SPL D +V RPAKK
Sbjct: 42  KEIKLRQPEELLNKVDKLALSVEKGKEKEKTFEEFYKEFEKEIDEFSPLEDNVVERPAKK 101

Query: 62  RKVAMKKKTLRAQF 74
           R V MKKK LR QF
Sbjct: 102 RNVTMKKKVLRDQF 115

[Close]

BLAST of IVF0017305.2 vs. NCBI nr
Match: KAA0066500.1 (protein MNN4-like [Cucumis melo var. makuwa] >TYK06141.1 protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 2.59e-16
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 2   KETKLRELKKLLSQVEKVALSVEKGKDKENNFDEHCEEFKKEIEELSPLLDEMVRPAKKR 61
           KE +LRE ++LL +VEKVA+  EKGK +E  F+EH EEF+KEI EL PL D+ +RPA KR
Sbjct: 72  KEIRLREQEELLGKVEKVAIFAEKGKGEEKTFEEHYEEFEKEINELIPLEDKAIRPATKR 131

Query: 62  KVAMKKKTLRAQF 74
           K+ MKKK LR +F
Sbjct: 132 KIMMKKKALREKF 144

[Close]

BLAST of IVF0017305.2 vs. NCBI nr
Match: KAA0033147.1 (hypothetical protein E6C27_scaffold269G002910 [Cucumis melo var. makuwa] >TYK17087.1 hypothetical protein E5676_scaffold1032G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 3.92e-15
Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 2   KETKLRELKKLLSQVEKVALSVEKGKDKENNFDEHCEEFKKEIEELSPLLDEMVRPAKKR 61
           KETKLRE ++LL +V+ VALS EK K +E NF+ H EEF+KEI++L PL ++++RPAKKR
Sbjct: 200 KETKLREREELLGKVDNVALSAEKDKCEEKNFEVHYEEFEKEIDKLCPLEEKVIRPAKKR 259

Query: 62  KVAMKKKTLRAQF 74
              MKKK LR QF
Sbjct: 260 TFTMKKKALRKQF 272

The following BLAST results are available for this feature:

BLAST of IVF0017305.2 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017305.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TTT3	6.6e-29	100.00	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold543G00...	[more]
A0A5D3BF32	1.4e-18	100.00	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G0...	[more]
A0A5A7TGV4	3.3e-12	63.51	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G009...	[more]
A0A5D3C2J1	3.3e-12	60.27	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold572G00...	[more]
A0A5A7SUZ4	7.3e-12	60.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0017305.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046474.1	1.94e-39	100.00	protein MNN4-like [Cucumis melo var. makuwa]	[more]
TYJ97737.1	7.33e-24	100.00	protein MNN4-like [Cucumis melo var. makuwa]	[more]
KAA0041276.1	2.38e-16	63.51	protein MNN4-like [Cucumis melo var. makuwa] >TYK16072.1 protein MNN4-like [Cucu...	[more]
KAA0066500.1	2.59e-16	60.27	protein MNN4-like [Cucumis melo var. makuwa] >TYK06141.1 protein MNN4-like [Cucu...	[more]
KAA0033147.1	3.92e-15	60.27	hypothetical protein E6C27_scaffold269G002910 [Cucumis melo var. makuwa] >TYK170...	[more]

BLAST of IVF0017305.2 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0017305	IVF0017305	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0017305.2-exon	IVF0017305.2-exon-chr04:9846719..9846943	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0017305.2-cds	IVF0017305.2-cds-chr04:9846719..9846943	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0017305.2	IVF0017305.2-protein	polypeptide