IVF0015668.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0015668.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr09: 6994599 .. 6995160 (-)
Sequence length	459
RNA-Seq Expression	IVF0015668.1
Synteny	IVF0015668.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTTCAAAATCCAAGGTTCTAATGTCCATGTTTCAACGATCGATAGCCGAATAAAATTATTGAAGAGAATGTTCCATGCAATTGCGGAGATGCGTGGCCCAACTTGCAGTGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCGTCGAGAAAGAAGTCTTCGACGATTGGGTCAAGGTGCGTTACTAGTCATTTGAGCAATTAATGTAGTATATTTAAAAAAATGGACTAACAATTTATTATTGCACCTATATAGAGTCATCCGACGGCCAAGGGCCTCCTTAATAAGTCGTTTCCCCACTATGACGAACTGTCGTACATGTTTGGAAAAGATCGTGCAATGGGAGGTCGGCCCAAGAGTTTTACGGACGTTGGGTCAAACGATCTTGTTAGGTACGAGGCATTTACCGCTGACGCTGCATCGGATACGAACTTCCAGCCTATGTACAGTCAAGGATTGAGCATGTCGCTTGATGAACTGATGGGAACAAGAACCGCTCTAGTAAGTGAAGGTAAGTATATTTCGAGCGGGTCTAAGCGGAAACGTGAAGGATAG

mRNA sequence

ATGACCTTCAAAATCCAAGGTTCTAATGTCCATGTTTCAACGATCGATAGCCGAATAAAATTATTGAAGAGAATGTTCCATGCAATTGCGGAGATGCGTGGCCCAACTTGCAGTGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCGTCGAGAAAGAAGTCTTCGACGATTGGGGCCTCCTTAATAAGTCGTTTCCCCACTATGACGAACTGTCGTACATGTTTGGAAAAGATCGTGCAATGGGAGGTCGGCCCAAGAGTTTTACGGACGTTGGGTCAAACGATCTTGTTAGGTACGAGGCATTTACCGCTGACGCTGCATCGGATACGAACTTCCAGCCTATGTACAGTCAAGGATTGAGCATGTCGCTTGATGAACTGATGGGAACAAGAACCGCTCTAGTAAGTGAAGGTAAGTATATTTCGAGCGGGTCTAAGCGGAAACGTGAAGGATAG

Coding sequence (CDS)

ATGACCTTCAAAATCCAAGGTTCTAATGTCCATGTTTCAACGATCGATAGCCGAATAAAATTATTGAAGAGAATGTTCCATGCAATTGCGGAGATGCGTGGCCCAACTTGCAGTGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCGTCGAGAAAGAAGTCTTCGACGATTGGGGCCTCCTTAATAAGTCGTTTCCCCACTATGACGAACTGTCGTACATGTTTGGAAAAGATCGTGCAATGGGAGGTCGGCCCAAGAGTTTTACGGACGTTGGGTCAAACGATCTTGTTAGGTACGAGGCATTTACCGCTGACGCTGCATCGGATACGAACTTCCAGCCTATGTACAGTCAAGGATTGAGCATGTCGCTTGATGAACTGATGGGAACAAGAACCGCTCTAGTAAGTGAAGGTAAGTATATTTCGAGCGGGTCTAAGCGGAAACGTGAAGGATAG

Protein sequence

MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWGLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGLSMSLDELMGTRTALVSEGKYISSGSKRKREG

Homology

[Close]

BLAST of IVF0015668.1 vs. ExPASy TrEMBL
Match: A0A5D3C1J4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001630 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.4e-72
Identity = 138/146 (94.52%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW- 60
           MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW 
Sbjct: 52  MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWV 111

Query: 61  -------GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 120
                  GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN
Sbjct: 112 KSHPTAKGLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 171

Query: 121 FQPMYSQGLSMSLDELMGTRTALVSE 139
           FQPMYSQGLSMSLDELMGTRTALVSE
Sbjct: 172 FQPMYSQGLSMSLDELMGTRTALVSE 197

[Close]

BLAST of IVF0015668.1 vs. ExPASy TrEMBL
Match: A0A5A7TZA5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00090 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 9.9e-64
Identity = 124/160 (77.50%), Postives = 134/160 (83.75%), Query Frame = 0


Query: 1   MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW- 60
           M FKI  SNVH STIDSRIKLLKRMFHAI EMRGPTCSGFGWNDEQKCIV EKEVFDDW 
Sbjct: 23  MAFKIPCSNVHASTIDSRIKLLKRMFHAIGEMRGPTCSGFGWNDEQKCIVAEKEVFDDWV 82

Query: 61  -------GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 120
                  GLLNKSFPHYDELSY+F KD A GGR +SF DVGSND   Y+AF A+AASDT+
Sbjct: 83  RSHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAASDTD 142

Query: 121 FQPMYSQGLSMSLDELMGTRTALVSEGKYISSGSKRKREG 153
           FQPMYS+GL+MS DELMGTRTA VSEG+Y+SSGSK+KR G
Sbjct: 143 FQPMYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGG 182

[Close]

BLAST of IVF0015668.1 vs. ExPASy TrEMBL
Match: A0A5D3CHG6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001380 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.1e-62
Identity = 123/160 (76.88%), Postives = 132/160 (82.50%), Query Frame = 0


Query: 1   MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW- 60
           MTFKI  SNVH S IDSRIKLLKRMFHA+AEMRGPTC GFGWNDEQKCIV EKEVFDDW 
Sbjct: 52  MTFKIPSSNVHASMIDSRIKLLKRMFHALAEMRGPTCIGFGWNDEQKCIVAEKEVFDDWV 111

Query: 61  -------GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 120
                  GLLNK FPHYDEL Y+FGKDR M GR ++FT+VGSNDL  YEAF ADA SDT+
Sbjct: 112 KSHPVAKGLLNKLFPHYDELLYVFGKDRVMEGRTETFTNVGSNDLAGYEAFVADATSDTD 171

Query: 121 FQPMYSQGLSMSLDELMGTRTALVSEGKYISSGSKRKREG 153
           FQ MYSQGL+MSLDELM TRT  VSEG+Y+SSGSKRKR G
Sbjct: 172 FQLMYSQGLNMSLDELMETRTPRVSEGRYVSSGSKRKRGG 211

[Close]

BLAST of IVF0015668.1 vs. ExPASy TrEMBL
Match: A0A5A7UIE9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001660 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.7e-61
Identity = 122/160 (76.25%), Postives = 130/160 (81.25%), Query Frame = 0


Query: 1   MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW- 60
           M FKI GSNVH STIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIV EKEVFD+W 
Sbjct: 52  MAFKIPGSNVHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWV 111

Query: 61  -------GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 120
                  GLL K F HYDELSY+FGKDRA GG  +SF DVGSN+L  YE F A+A  DTN
Sbjct: 112 KSHLAAKGLLTKLFLHYDELSYVFGKDRATGGWAESFADVGSNNLAGYEPFIANATPDTN 171

Query: 121 FQPMYSQGLSMSLDELMGTRTALVSEGKYISSGSKRKREG 153
           FQPMYSQ L+MS DELMGTR A VSEG+Y+SSGSKRKR G
Sbjct: 172 FQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGG 211

[Close]

BLAST of IVF0015668.1 vs. ExPASy TrEMBL
Match: A0A5D3BRF0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G001260 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 122/160 (76.25%), Postives = 131/160 (81.88%), Query Frame = 0


Query: 1   MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW- 60
           MTFKI GSN+H  TIDSRIKLLKRMFHAIAEM G TCSGF WNDEQKCIV EKEVFDDW 
Sbjct: 255 MTFKIPGSNIHALTIDSRIKLLKRMFHAIAEMPGSTCSGFRWNDEQKCIVAEKEVFDDWV 314

Query: 61  -------GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 120
                  GLLNKSF HY++LSY+FGKDRAM G  +SF DV SNDL+ YEAF  DAA DTN
Sbjct: 315 KNHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWVESFMDVTSNDLIGYEAFAIDAAPDTN 374

Query: 121 FQPMYSQGLSMSLDELMGTRTALVSEGKYISSGSKRKREG 153
           FQ MYSQGL+MS DELMGTRTA VSEG+Y+SSGSKRKR G
Sbjct: 375 FQLMYSQGLNMSPDELMGTRTARVSEGRYVSSGSKRKRGG 414

[Close]

BLAST of IVF0015668.1 vs. NCBI nr
Match: TYK05687.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 280 bits (717), Expect = 3.31e-93
Identity = 138/146 (94.52%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW- 60
           MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW 
Sbjct: 52  MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWV 111

Query: 61  -------GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 120
                  GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN
Sbjct: 112 KSHPTAKGLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 171

Query: 121 FQPMYSQGLSMSLDELMGTRTALVSE 138
           FQPMYSQGLSMSLDELMGTRTALVSE
Sbjct: 172 FQPMYSQGLSMSLDELMGTRTALVSE 197

[Close]

BLAST of IVF0015668.1 vs. NCBI nr
Match: KAA0048374.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 253 bits (646), Expect = 3.47e-82
Identity = 124/160 (77.50%), Postives = 134/160 (83.75%), Query Frame = 0


Query: 1   MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW- 60
           M FKI  SNVH STIDSRIKLLKRMFHAI EMRGPTCSGFGWNDEQKCIV EKEVFDDW 
Sbjct: 23  MAFKIPCSNVHASTIDSRIKLLKRMFHAIGEMRGPTCSGFGWNDEQKCIVAEKEVFDDWV 82

Query: 61  -------GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 120
                  GLLNKSFPHYDELSY+F KD A GGR +SF DVGSND   Y+AF A+AASDT+
Sbjct: 83  RSHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAASDTD 142

Query: 121 FQPMYSQGLSMSLDELMGTRTALVSEGKYISSGSKRKREG 152
           FQPMYS+GL+MS DELMGTRTA VSEG+Y+SSGSK+KR G
Sbjct: 143 FQPMYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGG 182

[Close]

BLAST of IVF0015668.1 vs. NCBI nr
Match: KAA0037854.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK09826.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 249 bits (637), Expect = 8.62e-81
Identity = 123/160 (76.88%), Postives = 132/160 (82.50%), Query Frame = 0


Query: 1   MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW- 60
           MTFKI  SNVH S IDSRIKLLKRMFHA+AEMRGPTC GFGWNDEQKCIV EKEVFDDW 
Sbjct: 52  MTFKIPSSNVHASMIDSRIKLLKRMFHALAEMRGPTCIGFGWNDEQKCIVAEKEVFDDWV 111

Query: 61  -------GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 120
                  GLLNK FPHYDEL Y+FGKDR M GR ++FT+VGSNDL  YEAF ADA SDT+
Sbjct: 112 KSHPVAKGLLNKLFPHYDELLYVFGKDRVMEGRTETFTNVGSNDLAGYEAFVADATSDTD 171

Query: 121 FQPMYSQGLSMSLDELMGTRTALVSEGKYISSGSKRKREG 152
           FQ MYSQGL+MSLDELM TRT  VSEG+Y+SSGSKRKR G
Sbjct: 172 FQLMYSQGLNMSLDELMETRTPRVSEGRYVSSGSKRKRGG 211

[Close]

BLAST of IVF0015668.1 vs. NCBI nr
Match: KAA0054347.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12384.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 245 bits (625), Expect = 5.72e-79
Identity = 122/160 (76.25%), Postives = 130/160 (81.25%), Query Frame = 0


Query: 1   MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW- 60
           M FKI GSNVH STIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIV EKEVFD+W 
Sbjct: 52  MAFKIPGSNVHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWV 111

Query: 61  -------GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 120
                  GLL K F HYDELSY+FGKDRA GG  +SF DVGSN+L  YE F A+A  DTN
Sbjct: 112 KSHLAAKGLLTKLFLHYDELSYVFGKDRATGGWAESFADVGSNNLAGYEPFIANATPDTN 171

Query: 121 FQPMYSQGLSMSLDELMGTRTALVSEGKYISSGSKRKREG 152
           FQPMYSQ L+MS DELMGTR A VSEG+Y+SSGSKRKR G
Sbjct: 172 FQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGG 211

[Close]

BLAST of IVF0015668.1 vs. NCBI nr
Match: KAA0047075.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 243 bits (619), Expect = 4.66e-78
Identity = 117/160 (73.12%), Postives = 130/160 (81.25%), Query Frame = 0


Query: 1   MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW- 60
           M FKI G N+H STIDSRIKL+KRMFHA+AEMRGP CSGFGWNDE+KCIVVEKE+FDDW 
Sbjct: 52  MAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWV 111

Query: 61  -------GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 120
                  GLLNKSF HYDELSY+FGKDRA GGR +SFTD+GSND   Y+AF ADAA DTN
Sbjct: 112 KSHPMAKGLLNKSFVHYDELSYVFGKDRATGGRAESFTDIGSNDPAGYDAFAADAAPDTN 171

Query: 121 FQPMYSQGLSMSLDELMGTRTALVSEGKYISSGSKRKREG 152
           F PMYS GL+MS D+LM TRT  VSE + +SSGSKRKR G
Sbjct: 172 FSPMYSSGLNMSPDDLMETRTVRVSERRNVSSGSKRKRPG 211

The following BLAST results are available for this feature:

BLAST of IVF0015668.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015668.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C1J4	3.4e-72	94.52	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TZA5	9.9e-64	77.50	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CHG6	1.1e-62	76.88	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UIE9	2.7e-61	76.25	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BRF0	1.3e-60	76.25	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0015668.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05687.1	3.31e-93	94.52	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048374.1	3.47e-82	77.50	retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon p...	[more]
KAA0037854.1	8.62e-81	76.88	retrotransposon protein [Cucumis melo var. makuwa] >TYK09826.1 retrotransposon p...	[more]
KAA0054347.1	5.72e-79	76.25	retrotransposon protein [Cucumis melo var. makuwa] >TYK12384.1 retrotransposon p...	[more]
KAA0047075.1	4.66e-78	73.13	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0015668.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 15..92
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 15..92

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0015668	IVF0015668	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0015668.1-exon	IVF0015668.1-exon-chr09:6994599..6994880	exon
IVF0015668.1-exon	IVF0015668.1-exon-chr09:6994984..6995160	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0015668.1-cds	IVF0015668.1-cds-chr09:6994599..6994880	CDS
IVF0015668.1-cds	IVF0015668.1-cds-chr09:6994984..6995160	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0015668.1	IVF0015668.1-protein	polypeptide