Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTTCAAAATCCAAGGTTCTAATGTCCATGTTTCAACGATCGATAGCCGAATAAAATTATTGAAGAGAATGTTCCATGCAATTGCGGAGATGCGTGGCCCAACTTGCAGTGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCGTCGAGAAAGAAGTCTTCGACGATTGGGTCAAGGTGCGTTACTAGTCATTTGAGCAATTAATGTAGTATATTTAAAAAAATGGACTAACAATTTATTATTGCACCTATATAGAGTCATCCGACGGCCAAGGGCCTCCTTAATAAGTCGTTTCCCCACTATGACGAACTGTCGTACATGTTTGGAAAAGATCGTGCAATGGGAGGTCGGCCCAAGAGTTTTACGGACGTTGGGTCAAACGATCTTGTTAGGTACGAGGCATTTACCGCTGACGCTGCATCGGATACGAACTTCCAGCCTATGTACAGTCAAGGATTGAGCATGTCGCTTGATGAACTGATGGGAACAAGAACCGCTCTAGTAAGTGAAGGTAAGTATATTTCGAGCGGGTCTAAGCGGAAACGTGAAGGATAG
mRNA sequence
ATGACCTTCAAAATCCAAGGTTCTAATGTCCATGTTTCAACGATCGATAGCCGAATAAAATTATTGAAGAGAATGTTCCATGCAATTGCGGAGATGCGTGGCCCAACTTGCAGTGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCGTCGAGAAAGAAGTCTTCGACGATTGGGGCCTCCTTAATAAGTCGTTTCCCCACTATGACGAACTGTCGTACATGTTTGGAAAAGATCGTGCAATGGGAGGTCGGCCCAAGAGTTTTACGGACGTTGGGTCAAACGATCTTGTTAGGTACGAGGCATTTACCGCTGACGCTGCATCGGATACGAACTTCCAGCCTATGTACAGTCAAGGATTGAGCATGTCGCTTGATGAACTGATGGGAACAAGAACCGCTCTAGTAAGTGAAGGTAAGTATATTTCGAGCGGGTCTAAGCGGAAACGTGAAGGATAG
Coding sequence (CDS)
ATGACCTTCAAAATCCAAGGTTCTAATGTCCATGTTTCAACGATCGATAGCCGAATAAAATTATTGAAGAGAATGTTCCATGCAATTGCGGAGATGCGTGGCCCAACTTGCAGTGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCGTCGAGAAAGAAGTCTTCGACGATTGGGGCCTCCTTAATAAGTCGTTTCCCCACTATGACGAACTGTCGTACATGTTTGGAAAAGATCGTGCAATGGGAGGTCGGCCCAAGAGTTTTACGGACGTTGGGTCAAACGATCTTGTTAGGTACGAGGCATTTACCGCTGACGCTGCATCGGATACGAACTTCCAGCCTATGTACAGTCAAGGATTGAGCATGTCGCTTGATGAACTGATGGGAACAAGAACCGCTCTAGTAAGTGAAGGTAAGTATATTTCGAGCGGGTCTAAGCGGAAACGTGAAGGATAG
Protein sequence
MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWGLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGLSMSLDELMGTRTALVSEGKYISSGSKRKREG
Homology
BLAST of IVF0015668 vs. ExPASy TrEMBL
Match:
A0A5D3C1J4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001630 PE=4 SV=1)
HSP 1 Score: 280.8 bits (717), Expect = 3.4e-72
Identity = 138/146 (94.52%), Postives = 138/146 (94.52%), Query Frame = 0
Query: 1 MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW- 60
MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW
Sbjct: 52 MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWV 111
Query: 61 -------GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 120
GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN
Sbjct: 112 KSHPTAKGLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 171
Query: 121 FQPMYSQGLSMSLDELMGTRTALVSE 139
FQPMYSQGLSMSLDELMGTRTALVSE
Sbjct: 172 FQPMYSQGLSMSLDELMGTRTALVSE 197
BLAST of IVF0015668 vs. ExPASy TrEMBL
Match:
A0A5A7TZA5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00090 PE=4 SV=1)
HSP 1 Score: 252.7 bits (644), Expect = 9.9e-64
Identity = 124/160 (77.50%), Postives = 134/160 (83.75%), Query Frame = 0
Query: 1 MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW- 60
M FKI SNVH STIDSRIKLLKRMFHAI EMRGPTCSGFGWNDEQKCIV EKEVFDDW
Sbjct: 23 MAFKIPCSNVHASTIDSRIKLLKRMFHAIGEMRGPTCSGFGWNDEQKCIVAEKEVFDDWV 82
Query: 61 -------GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 120
GLLNKSFPHYDELSY+F KD A GGR +SF DVGSND Y+AF A+AASDT+
Sbjct: 83 RSHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAASDTD 142
Query: 121 FQPMYSQGLSMSLDELMGTRTALVSEGKYISSGSKRKREG 153
FQPMYS+GL+MS DELMGTRTA VSEG+Y+SSGSK+KR G
Sbjct: 143 FQPMYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGG 182
BLAST of IVF0015668 vs. ExPASy TrEMBL
Match:
A0A5D3CHG6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001380 PE=4 SV=1)
HSP 1 Score: 249.2 bits (635), Expect = 1.1e-62
Identity = 123/160 (76.88%), Postives = 132/160 (82.50%), Query Frame = 0
Query: 1 MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW- 60
MTFKI SNVH S IDSRIKLLKRMFHA+AEMRGPTC GFGWNDEQKCIV EKEVFDDW
Sbjct: 52 MTFKIPSSNVHASMIDSRIKLLKRMFHALAEMRGPTCIGFGWNDEQKCIVAEKEVFDDWV 111
Query: 61 -------GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 120
GLLNK FPHYDEL Y+FGKDR M GR ++FT+VGSNDL YEAF ADA SDT+
Sbjct: 112 KSHPVAKGLLNKLFPHYDELLYVFGKDRVMEGRTETFTNVGSNDLAGYEAFVADATSDTD 171
Query: 121 FQPMYSQGLSMSLDELMGTRTALVSEGKYISSGSKRKREG 153
FQ MYSQGL+MSLDELM TRT VSEG+Y+SSGSKRKR G
Sbjct: 172 FQLMYSQGLNMSLDELMETRTPRVSEGRYVSSGSKRKRGG 211
BLAST of IVF0015668 vs. ExPASy TrEMBL
Match:
A0A5A7UIE9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001660 PE=4 SV=1)
HSP 1 Score: 244.6 bits (623), Expect = 2.7e-61
Identity = 122/160 (76.25%), Postives = 130/160 (81.25%), Query Frame = 0
Query: 1 MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW- 60
M FKI GSNVH STIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIV EKEVFD+W
Sbjct: 52 MAFKIPGSNVHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWV 111
Query: 61 -------GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 120
GLL K F HYDELSY+FGKDRA GG +SF DVGSN+L YE F A+A DTN
Sbjct: 112 KSHLAAKGLLTKLFLHYDELSYVFGKDRATGGWAESFADVGSNNLAGYEPFIANATPDTN 171
Query: 121 FQPMYSQGLSMSLDELMGTRTALVSEGKYISSGSKRKREG 153
FQPMYSQ L+MS DELMGTR A VSEG+Y+SSGSKRKR G
Sbjct: 172 FQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGG 211
BLAST of IVF0015668 vs. ExPASy TrEMBL
Match:
A0A5D3BRF0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G001260 PE=4 SV=1)
HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 122/160 (76.25%), Postives = 131/160 (81.88%), Query Frame = 0
Query: 1 MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW- 60
MTFKI GSN+H TIDSRIKLLKRMFHAIAEM G TCSGF WNDEQKCIV EKEVFDDW
Sbjct: 255 MTFKIPGSNIHALTIDSRIKLLKRMFHAIAEMPGSTCSGFRWNDEQKCIVAEKEVFDDWV 314
Query: 61 -------GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 120
GLLNKSF HY++LSY+FGKDRAM G +SF DV SNDL+ YEAF DAA DTN
Sbjct: 315 KNHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWVESFMDVTSNDLIGYEAFAIDAAPDTN 374
Query: 121 FQPMYSQGLSMSLDELMGTRTALVSEGKYISSGSKRKREG 153
FQ MYSQGL+MS DELMGTRTA VSEG+Y+SSGSKRKR G
Sbjct: 375 FQLMYSQGLNMSPDELMGTRTARVSEGRYVSSGSKRKRGG 414
BLAST of IVF0015668 vs. NCBI nr
Match:
TYK05687.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 280 bits (717), Expect = 3.31e-93
Identity = 138/146 (94.52%), Postives = 138/146 (94.52%), Query Frame = 0
Query: 1 MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW- 60
MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW
Sbjct: 52 MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWV 111
Query: 61 -------GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 120
GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN
Sbjct: 112 KSHPTAKGLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 171
Query: 121 FQPMYSQGLSMSLDELMGTRTALVSE 138
FQPMYSQGLSMSLDELMGTRTALVSE
Sbjct: 172 FQPMYSQGLSMSLDELMGTRTALVSE 197
BLAST of IVF0015668 vs. NCBI nr
Match:
KAA0048374.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 253 bits (646), Expect = 3.47e-82
Identity = 124/160 (77.50%), Postives = 134/160 (83.75%), Query Frame = 0
Query: 1 MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW- 60
M FKI SNVH STIDSRIKLLKRMFHAI EMRGPTCSGFGWNDEQKCIV EKEVFDDW
Sbjct: 23 MAFKIPCSNVHASTIDSRIKLLKRMFHAIGEMRGPTCSGFGWNDEQKCIVAEKEVFDDWV 82
Query: 61 -------GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 120
GLLNKSFPHYDELSY+F KD A GGR +SF DVGSND Y+AF A+AASDT+
Sbjct: 83 RSHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAASDTD 142
Query: 121 FQPMYSQGLSMSLDELMGTRTALVSEGKYISSGSKRKREG 152
FQPMYS+GL+MS DELMGTRTA VSEG+Y+SSGSK+KR G
Sbjct: 143 FQPMYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGG 182
BLAST of IVF0015668 vs. NCBI nr
Match:
KAA0037854.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK09826.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 249 bits (637), Expect = 8.62e-81
Identity = 123/160 (76.88%), Postives = 132/160 (82.50%), Query Frame = 0
Query: 1 MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW- 60
MTFKI SNVH S IDSRIKLLKRMFHA+AEMRGPTC GFGWNDEQKCIV EKEVFDDW
Sbjct: 52 MTFKIPSSNVHASMIDSRIKLLKRMFHALAEMRGPTCIGFGWNDEQKCIVAEKEVFDDWV 111
Query: 61 -------GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 120
GLLNK FPHYDEL Y+FGKDR M GR ++FT+VGSNDL YEAF ADA SDT+
Sbjct: 112 KSHPVAKGLLNKLFPHYDELLYVFGKDRVMEGRTETFTNVGSNDLAGYEAFVADATSDTD 171
Query: 121 FQPMYSQGLSMSLDELMGTRTALVSEGKYISSGSKRKREG 152
FQ MYSQGL+MSLDELM TRT VSEG+Y+SSGSKRKR G
Sbjct: 172 FQLMYSQGLNMSLDELMETRTPRVSEGRYVSSGSKRKRGG 211
BLAST of IVF0015668 vs. NCBI nr
Match:
KAA0054347.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12384.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 245 bits (625), Expect = 5.72e-79
Identity = 122/160 (76.25%), Postives = 130/160 (81.25%), Query Frame = 0
Query: 1 MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW- 60
M FKI GSNVH STIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIV EKEVFD+W
Sbjct: 52 MAFKIPGSNVHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWV 111
Query: 61 -------GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 120
GLL K F HYDELSY+FGKDRA GG +SF DVGSN+L YE F A+A DTN
Sbjct: 112 KSHLAAKGLLTKLFLHYDELSYVFGKDRATGGWAESFADVGSNNLAGYEPFIANATPDTN 171
Query: 121 FQPMYSQGLSMSLDELMGTRTALVSEGKYISSGSKRKREG 152
FQPMYSQ L+MS DELMGTR A VSEG+Y+SSGSKRKR G
Sbjct: 172 FQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGG 211
BLAST of IVF0015668 vs. NCBI nr
Match:
KAA0047075.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 243 bits (619), Expect = 4.66e-78
Identity = 117/160 (73.12%), Postives = 130/160 (81.25%), Query Frame = 0
Query: 1 MTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW- 60
M FKI G N+H STIDSRIKL+KRMFHA+AEMRGP CSGFGWNDE+KCIVVEKE+FDDW
Sbjct: 52 MAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWV 111
Query: 61 -------GLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTN 120
GLLNKSF HYDELSY+FGKDRA GGR +SFTD+GSND Y+AF ADAA DTN
Sbjct: 112 KSHPMAKGLLNKSFVHYDELSYVFGKDRATGGRAESFTDIGSNDPAGYDAFAADAAPDTN 171
Query: 121 FQPMYSQGLSMSLDELMGTRTALVSEGKYISSGSKRKREG 152
F PMYS GL+MS D+LM TRT VSE + +SSGSKRKR G
Sbjct: 172 FSPMYSSGLNMSPDDLMETRTVRVSERRNVSSGSKRKRPG 211
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3C1J4 | 3.4e-72 | 94.52 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TZA5 | 9.9e-64 | 77.50 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3CHG6 | 1.1e-62 | 76.88 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7UIE9 | 2.7e-61 | 76.25 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3BRF0 | 1.3e-60 | 76.25 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
TYK05687.1 | 3.31e-93 | 94.52 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0048374.1 | 3.47e-82 | 77.50 | retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon p... | [more] |
KAA0037854.1 | 8.62e-81 | 76.88 | retrotransposon protein [Cucumis melo var. makuwa] >TYK09826.1 retrotransposon p... | [more] |
KAA0054347.1 | 5.72e-79 | 76.25 | retrotransposon protein [Cucumis melo var. makuwa] >TYK12384.1 retrotransposon p... | [more] |
KAA0047075.1 | 4.66e-78 | 73.13 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |