Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: five_prime_UTRexonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. CTTTGTCGATGCCTCTACTGAGGTCTTTCGTTCAACATATGCTATTTGGGTGTAGCATCTGTCATCTGAAGTATCTTTGGGTCAAAACAAAAGCGCGGAAAAGTCAAAATTGGAGCAACAAGGGTACGTCGGAGCGGTAAAGGAAAGTCAGACTGACAACTGTTACAACAAAGACGTGAATAGAAACATAGAGAGGAAGGCGAGAAGTTTCAGAGGTAACGTATGTCAGCGACAATAACGAAACCAAAGAGAGAGGAAGGGATCCATTTCGGAGGCAACATTGAAATGCAACTCTCAATGAAATGCAAAAGGGGTTTCAACGGTGCGGATCAGAAATCAGGGATGAAAATGCAACGACAGAGGAATATGAAAATACACAATATGGGTGTCGACTCGAAGAGGAAAAGTAGGGAAAATTGTTCAACATGGTATACTTTGGAGGGGAAAACGAAAATGGAACGGAAAAGGAGGAAGAATAAGAGTAAAAGAGAAGGATTTCGAACAGATTGGCAGACGAATTACAAAGGGTTTAGGGAGGATTACGATTGGATATGA mRNA sequence CTTTGTCGATGCCTCTACTGAGGTCTTTCGTTCAACATATGCTATTTGGGTGTAGCATCTGTCATCTGAAGTATCTTTGGGTCAAAACAAAAGCGCGGAAAAGTCAAAATTGGAGCAACAAGGGTACGTCGGAGCGGTAAAGGAAAGTCAGACTGACAACTGTTACAACAAAGACGTGAATAGAAACATAGAGAGGAAGGCGAGAAGTTTCAGAGGTAACGTATGTCAGCGACAATAACGAAACCAAAGAGAGAGGAAGGGATCCATTTCGGAGGCAACATTGAAATGCAACTCTCAATGAAATGCAAAAGGGGTTTCAACGGTGCGGATCAGAAATCAGGGATGAAAATGCAACGACAGAGGAATATGAAAATACACAATATGGGTGTCGACTCGAAGAGGAAAAGTAGGGAAAATTGTTCAACATGGTATACTTTGGAGGGGAAAACGAAAATGGAACGGAAAAGGAGGAAGAATAAGAGTAAAAGAGAAGGATTTCGAACAGATTGGCAGACGAATTACAAAGGGTTTAGGGAGGATTACGATTGGATATGA Coding sequence (CDS) ATGTCAGCGACAATAACGAAACCAAAGAGAGAGGAAGGGATCCATTTCGGAGGCAACATTGAAATGCAACTCTCAATGAAATGCAAAAGGGGTTTCAACGGTGCGGATCAGAAATCAGGGATGAAAATGCAACGACAGAGGAATATGAAAATACACAATATGGGTGTCGACTCGAAGAGGAAAAGTAGGGAAAATTGTTCAACATGGTATACTTTGGAGGGGAAAACGAAAATGGAACGGAAAAGGAGGAAGAATAAGAGTAAAAGAGAAGGATTTCGAACAGATTGGCAGACGAATTACAAAGGGTTTAGGGAGGATTACGATTGGATATGA Protein sequence MSATITKPKREEGIHFGGNIEMQLSMKCKRGFNGADQKSGMKMQRQRNMKIHNMGVDSKRKSRENCSTWYTLEGKTKMERKRRKNKSKREGFRTDWQTNYKGFREDYDWI
Homology
BLAST of IVF0013136.1 vs. ExPASy TrEMBL
Match: A0A0A0L0W5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000040 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.8e-11 Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 0 Query: 38 KSGMKMQRQRNMKIHNMGVDSKRKSRENCSTWYTLEGKTKMERKRRKNKSKREGFRTDWQ 97 KSGMK QRQR KI N+GVDSKRK E ST Y L+GKTK+E+K KN SKRE DW+ Sbjct: 2 KSGMKTQRQRKTKICNIGVDSKRKGGEIRSTVYFLKGKTKLEQKMTKNTSKREENSMDWR 61
Query: 98 TNYKGFREDY 108 TNY GF++DY Sbjct: 62 TNYIGFQKDY 71
BLAST of IVF0013136.1 vs. NCBI nr
Match: KGN55580.1 (hypothetical protein Csa_010012 [Cucumis sativus]) HSP 1 Score: 78.2 bits (191), Expect = 2.69e-16 Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 0 Query: 38 KSGMKMQRQRNMKIHNMGVDSKRKSRENCSTWYTLEGKTKMERKRRKNKSKREGFRTDWQ 97 KSGMK QRQR KI N+GVDSKRK E ST Y L+GKTK+E+K KN SKRE DW+ Sbjct: 2 KSGMKTQRQRKTKICNIGVDSKRKGGEIRSTVYFLKGKTKLEQKMTKNTSKREENSMDWR 61
Query: 98 TNYKGFREDY 107 TNY GF++DY Sbjct: 62 TNYIGFQKDY 71
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L0W5 | 1.8e-11 | 64.29 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000040 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KGN55580.1 | 2.69e-16 | 64.29 | hypothetical protein Csa_010012 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Type |
IVF0013136 | IVF0013136 | gene |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
IVF0013136.1-five_prime_utr | IVF0013136.1-five_prime_utr-chr06:3831101..3831322 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
IVF0013136.1-exon | IVF0013136.1-exon-chr06:3831101..3831655 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
IVF0013136.1-cds | IVF0013136.1-cds-chr06:3831323..3831655 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
IVF0013136.1 | IVF0013136.1-protein | polypeptide |
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