IVF0013136 (gene) Melon (IVF77) v1

Overview


Name	IVF0013136
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr06: 3831101 .. 3831655 (+)
RNA-Seq Expression	IVF0013136
Synteny	IVF0013136

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTGTCGATGCCTCTACTGAGGTCTTTCGTTCAACATATGCTATTTGGGTGTAGCATCTGTCATCTGAAGTATCTTTGGGTCAAAACAAAAGCGCGGAAAAGTCAAAATTGGAGCAACAAGGGTACGTCGGAGCGGTAAAGGAAAGTCAGACTGACAACTGTTACAACAAAGACGTGAATAGAAACATAGAGAGGAAGGCGAGAAGTTTCAGAGGTAACGTATGTCAGCGACAATAACGAAACCAAAGAGAGAGGAAGGGATCCATTTCGGAGGCAACATTGAAATGCAACTCTCAATGAAATGCAAAAGGGGTTTCAACGGTGCGGATCAGAAATCAGGGATGAAAATGCAACGACAGAGGAATATGAAAATACACAATATGGGTGTCGACTCGAAGAGGAAAAGTAGGGAAAATTGTTCAACATGGTATACTTTGGAGGGGAAAACGAAAATGGAACGGAAAAGGAGGAAGAATAAGAGTAAAAGAGAAGGATTTCGAACAGATTGGCAGACGAATTACAAAGGGTTTAGGGAGGATTACGATTGGATATGA

mRNA sequence

CTTTGTCGATGCCTCTACTGAGGTCTTTCGTTCAACATATGCTATTTGGGTGTAGCATCTGTCATCTGAAGTATCTTTGGGTCAAAACAAAAGCGCGGAAAAGTCAAAATTGGAGCAACAAGGGTACGTCGGAGCGGTAAAGGAAAGTCAGACTGACAACTGTTACAACAAAGACGTGAATAGAAACATAGAGAGGAAGGCGAGAAGTTTCAGAGGTAACGTATGTCAGCGACAATAACGAAACCAAAGAGAGAGGAAGGGATCCATTTCGGAGGCAACATTGAAATGCAACTCTCAATGAAATGCAAAAGGGGTTTCAACGGTGCGGATCAGAAATCAGGGATGAAAATGCAACGACAGAGGAATATGAAAATACACAATATGGGTGTCGACTCGAAGAGGAAAAGTAGGGAAAATTGTTCAACATGGTATACTTTGGAGGGGAAAACGAAAATGGAACGGAAAAGGAGGAAGAATAAGAGTAAAAGAGAAGGATTTCGAACAGATTGGCAGACGAATTACAAAGGGTTTAGGGAGGATTACGATTGGATATGA

Coding sequence (CDS)

ATGTCAGCGACAATAACGAAACCAAAGAGAGAGGAAGGGATCCATTTCGGAGGCAACATTGAAATGCAACTCTCAATGAAATGCAAAAGGGGTTTCAACGGTGCGGATCAGAAATCAGGGATGAAAATGCAACGACAGAGGAATATGAAAATACACAATATGGGTGTCGACTCGAAGAGGAAAAGTAGGGAAAATTGTTCAACATGGTATACTTTGGAGGGGAAAACGAAAATGGAACGGAAAAGGAGGAAGAATAAGAGTAAAAGAGAAGGATTTCGAACAGATTGGCAGACGAATTACAAAGGGTTTAGGGAGGATTACGATTGGATATGA

Protein sequence

MSATITKPKREEGIHFGGNIEMQLSMKCKRGFNGADQKSGMKMQRQRNMKIHNMGVDSKRKSRENCSTWYTLEGKTKMERKRRKNKSKREGFRTDWQTNYKGFREDYDWI

Homology

[Close]

BLAST of IVF0013136 vs. ExPASy TrEMBL
Match: A0A0A0L0W5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000040 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.8e-11
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 38  KSGMKMQRQRNMKIHNMGVDSKRKSRENCSTWYTLEGKTKMERKRRKNKSKREGFRTDWQ 97
           KSGMK QRQR  KI N+GVDSKRK  E  ST Y L+GKTK+E+K  KN SKRE    DW+
Sbjct: 2   KSGMKTQRQRKTKICNIGVDSKRKGGEIRSTVYFLKGKTKLEQKMTKNTSKREENSMDWR 61

Query: 98  TNYKGFREDY 108
           TNY GF++DY
Sbjct: 62  TNYIGFQKDY 71

[Close]

BLAST of IVF0013136 vs. NCBI nr
Match: KGN55580.1 (hypothetical protein Csa_010012 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 2.69e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 38  KSGMKMQRQRNMKIHNMGVDSKRKSRENCSTWYTLEGKTKMERKRRKNKSKREGFRTDWQ 97
           KSGMK QRQR  KI N+GVDSKRK  E  ST Y L+GKTK+E+K  KN SKRE    DW+
Sbjct: 2   KSGMKTQRQRKTKICNIGVDSKRKGGEIRSTVYFLKGKTKLEQKMTKNTSKREENSMDWR 61

Query: 98  TNYKGFREDY 107
           TNY GF++DY
Sbjct: 62  TNYIGFQKDY 71

The following BLAST results are available for this feature:

BLAST of IVF0013136 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013136 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0W5	1.8e-11	64.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000040 PE=4 SV=1	[more]

BLAST of IVF0013136 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55580.1	2.69e-16	64.29	hypothetical protein Csa_010012 [Cucumis sativus]	[more]

BLAST of IVF0013136 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013136.1	IVF0013136.1	mRNA