IVF0011257.1 (mRNA) Melon (IVF77) v1

Overview
NameIVF0011257.1
TypemRNA
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr05: 12305757 .. 12305963 (-)
Sequence length207
RNA-Seq ExpressionIVF0011257.1
SyntenyIVF0011257.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCTGCCGCCTTCAGAAAACGTCGAACAATTCATTCCTGTCAAATCTACAGCTGTCTGCATTGCCAACATGCACCGTTGCCGTGGAGATACACGCATCGGTCCTTCCTCCACAGATAGCGTCGACCAACCCATTCGTGCAACCCTTTTCTTCATCCGTGGCCCATATTGCTCCCCACGCCTCGATTTGTGTACTGCCACCTAA

mRNA sequence

ATGGTTCTGCCGCCTTCAGAAAACGTCGAACAATTCATTCCTGTCAAATCTACAGCTGTCTGCATTGCCAACATGCACCGTTGCCGTGGAGATACACGCATCGGTCCTTCCTCCACAGATAGCGTCGACCAACCCATTCGTGCAACCCTTTTCTTCATCCGTGGCCCATATTGCTCCCCACGCCTCGATTTGTGTACTGCCACCTAA

Coding sequence (CDS)

ATGGTTCTGCCGCCTTCAGAAAACGTCGAACAATTCATTCCTGTCAAATCTACAGCTGTCTGCATTGCCAACATGCACCGTTGCCGTGGAGATACACGCATCGGTCCTTCCTCCACAGATAGCGTCGACCAACCCATTCGTGCAACCCTTTTCTTCATCCGTGGCCCATATTGCTCCCCACGCCTCGATTTGTGTACTGCCACCTAA

Protein sequence

MVLPPSENVEQFIPVKSTAVCIANMHRCRGDTRIGPSSTDSVDQPIRATLFFIRGPYCSPRLDLCTAT
Homology
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BLAST of IVF0011257.1 vs. NCBI nr
Match: KAA0053444.1 (hypothetical protein E6C27_scaffold428G001180 [Cucumis melo var. makuwa])

HSP 1 Score: 47.8 bits (112), Expect = 3.82e-04
Identity = 29/61 (47.54%), Postives = 36/61 (59.02%), Query Frame = 0 

Query: 4   PPSENVEQFIPVKSTAVCIANMHRCRGDTRIG---PSSTDSVDQPIRATLFFIRGPYCSP 61
           PPS+NV+Q  PV S A+  A  H  R   +     PS +++ D P  ATLFFIRG  CSP
Sbjct: 123 PPSDNVDQCNPVNS-AIVRAAKHLPRTTAKATCACPSCSNNADYPFYATLFFIRGLNCSP 182

The following BLAST results are available for this feature:
BLAST of IVF0011257.1 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0011257.1 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0011257.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0053444.13.82e-0447.54hypothetical protein E6C27_scaffold428G001180 [Cucumis melo var. makuwa][more]
BLAST of IVF0011257.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
IVF0011257IVF0011257gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0011257.1-exonIVF0011257.1-exon-chr05:12305757..12305963exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0011257.1-cdsIVF0011257.1-cds-chr05:12305757..12305963CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
IVF0011257.1IVF0011257.1-proteinpolypeptide