IVF0010567.2 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0010567.2
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	28 kDa ribonucleoprotein, chloroplastic
Location	tig00001265: 63010 .. 65511 (+)
Sequence length	858
RNA-Seq Expression	IVF0010567.2
Synteny	IVF0010567.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACGCTCGAATCCGCACTTCCAATAATCTCTCCATATGTTTCTTCTTCTTCCTCCTCAAAATTATGCTTCAATAAACTTCCCTCCGCCATTAAGCTTCGAATTTCCTTCTCCTCCCCTCTCCTTTCCCTCAATCCCCCAACCCCCATTTCCCCTATCTCTTTCAATTCATCGCGAAATCCCGGCGGCGGAGGCCGACTATGTTCTGCAGTGCAAGAGGTCAGTTTGGAGGAAGCTTCAGAGGAAACTCAGGATGTGAATCAGAAGAAAAAATTATATATCTTCAATCTACCTTGGTCTTTATCTGTTGTTGACATTAAGGAGCTCTTTGGACAATGCGGCACTGTCTCTGATGTTGAGGTTCTTCTTTTTCTCTTCTTTCTTGTTCTGTCCTAGTGATTGGTTTGAGCAAATTCTAGAACTTAAACTAATAATTATATTAATATAAACGGTAAAGTAATCATCTTGAGAATTTAAACTACTAATTTTTCATTAATGAATAAATTACCTTTGAAAATCATGCATGTTTTTTCAAATGCCTAACTATTAAAGTAGGTAACTGCATAGACGACTTTCTAGGAAAATTTTGTCTAAGAGTCTAAGTTGATAGATTTTTTTAAAGTTTAGGGGTTGAATTGATACACTTATAAGTTATAAGTTTTATACTTTGGAATGTGTATAAAACTTCGGGAGTATGAATTGAATGATGATCTAATGAATTTGTGATGGACTGTGTGTTTGTACTTATATAGATTATAAAGCAGAAAAATGGAAGAAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCAGAAATTTGACTCTCAAGTAGGTTTTCTTCTACCTATTTGTGCTTACTTCTTTTTGCTTATTTGTTCAAATGAATTTTTATTCTTTTCTATACTGGTATTCTACCAATTACATTCCTGGTGTTCTGAAATTGTACATTTCCAATTTCAATATCACTTTTCGTATATATAAAACTACTTTGAGAGTCCTCAAGAGTTATTTTCTTTGGATATTTGTAGGTTTTCGAAGTCACTAGAGTTTGAAGTCGTTCCTTTTACTTTTTTTTTATCACATGTTTCAACACTACTAAACCAATCTATCGTTATCCAGAAGCCCTTTTTGATCCTATAGTTTATTGATGAGATTTCTATAGGGATGGCTCAAATTTGGTTTTACTAACGTCCGATAACCCGAATTCTAAAAACAATGGAAATTAACATTTTGCTCACGTCACAATGCACTAGCCAACATTGAAATGTCCATTCACGATCACAGGTCTCGCCCATTGCGAACTGATGCGACCATGAACAAGTTCACATTCGAGAATCACCAGACACGCATTTCAGTCATTTTATTGATTCTAAACAGACAAGTGTAGGTTCTTTTCATGGTAAACATATAATGTTAATATATTTGTGCAGGAAATATCAGGAAGAGTTATAAAGGTAGAGTTTGCAAAGAGATTTAAGAGACCTCCTCCACCAAAGCCTCCAGGTCCTCCTCCTGGAGAGACAGTGAATAAACTTTATGTATCAAATCTTGCATGGAAAGTGAGATCAAGCAATCTTAGAGACTTCTTTTCTGAAAGCTTTAACCCAATTGCAGCGAGGGTTGTCTTCGATAGCCCCTCTGGAAGATCTGCTGGTTATGGTTTTGTTTCTTTTGCTACTCGAGAGGAAGCTCAAACTGCACTTTCTTCTTTGGAGGGCAAGGTAATTTACTTCTTCAATAAGAAAATTTTGTCTATAAACACACATTTCACCAGGTGAAATTCTTGTTTTGTTAGATATGTTTTATCCGTAGTTTTCTTTTTCTTCTAAAATTGTTTTTGCTTTCAAGACCTTTTACTTGAAGGAACATGCAAACCAGGGTTAGAAATTGACGATAAATAAGGTTAATTTGAAAAACAAACGATTACTAAATAGTGCCTTGAAAATCTTGATTTGTCTAGTTACTTATTGTCGTTCATTTTTTATACATTCTAGTTCTATCCCGATCAAACCATTGATGAAGTTTTGTGTAACTGAAAATCTATTTGAAAAAGTTTTTCCAAGCCAATCATGAAGGGGTTTTTGGCCCACTTGGAGTTAGAACATTTGTATTTGGGATAAAGAGTTAAGATTGAATTCCTCAATGTAAATAGTAGAAAGGAAGGGGAAAGAAGAGTTACAAGTGTTAGTTACACAGATTATTCATGTTTAAATCAACACAAAAAAAAAAATGAAAACTTGAACTAATACTTCAAAACCTGAAAAGTAACTCAAGTACTATGACACATTTTCTTTCGCCCCTAATGCAAGTGGAATGTTCAATTTCCTTCCTTCCTAACAGATTTGAAATGCTTTACATTTTCCCTCTACAGGAATTGATGGGAAGACCCCTTCGCCTGAAATTCAGTGAAAGAAGTGTCAATGAATCAGAAACCCCAAAAGAAGACATTGTTGAAAGCCAACCTGAAGAATCATAG

mRNA sequence

ATGGCGACGCTCGAATCCGCACTTCCAATAATCTCTCCATATGTTTCTTCTTCTTCCTCCTCAAAATTATGCTTCAATAAACTTCCCTCCGCCATTAAGCTTCGAATTTCCTTCTCCTCCCCTCTCCTTTCCCTCAATCCCCCAACCCCCATTTCCCCTATCTCTTTCAATTCATCGCGAAATCCCGGCGGCGGAGGCCGACTATGTTCTGCAGTGCAAGAGGTCAGTTTGGAGGAAGCTTCAGAGGAAACTCAGGATGTGAATCAGAAGAAAAAATTATATATCTTCAATCTACCTTGGTCTTTATCTGTTGTTGACATTAAGGAGCTCTTTGGACAATGCGGCACTGTCTCTGATGTTGAGATTATAAAGCAGAAAAATGGAAGAAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCAGAAATTTGACTCTCAAGAAATATCAGGAAGAGTTATAAAGGTAGAGTTTGCAAAGAGATTTAAGAGACCTCCTCCACCAAAGCCTCCAGGTCCTCCTCCTGGAGAGACAGTGAATAAACTTTATGTATCAAATCTTGCATGGAAAGTGAGATCAAGCAATCTTAGAGACTTCTTTTCTGAAAGCTTTAACCCAATTGCAGCGAGGGTTGTCTTCGATAGCCCCTCTGGAAGATCTGCTGGTTATGGTTTTGTTTCTTTTGCTACTCGAGAGGAAGCTCAAACTGCACTTTCTTCTTTGGAGGGCAAGGAATTGATGGGAAGACCCCTTCGCCTGAAATTCAGTGAAAGAAGTGTCAATGAATCAGAAACCCCAAAAGAAGACATTGTTGAAAGCCAACCTGAAGAATCATAG

Coding sequence (CDS)

ATGGCGACGCTCGAATCCGCACTTCCAATAATCTCTCCATATGTTTCTTCTTCTTCCTCCTCAAAATTATGCTTCAATAAACTTCCCTCCGCCATTAAGCTTCGAATTTCCTTCTCCTCCCCTCTCCTTTCCCTCAATCCCCCAACCCCCATTTCCCCTATCTCTTTCAATTCATCGCGAAATCCCGGCGGCGGAGGCCGACTATGTTCTGCAGTGCAAGAGGTCAGTTTGGAGGAAGCTTCAGAGGAAACTCAGGATGTGAATCAGAAGAAAAAATTATATATCTTCAATCTACCTTGGTCTTTATCTGTTGTTGACATTAAGGAGCTCTTTGGACAATGCGGCACTGTCTCTGATGTTGAGATTATAAAGCAGAAAAATGGAAGAAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCAGAAATTTGACTCTCAAGAAATATCAGGAAGAGTTATAAAGGTAGAGTTTGCAAAGAGATTTAAGAGACCTCCTCCACCAAAGCCTCCAGGTCCTCCTCCTGGAGAGACAGTGAATAAACTTTATGTATCAAATCTTGCATGGAAAGTGAGATCAAGCAATCTTAGAGACTTCTTTTCTGAAAGCTTTAACCCAATTGCAGCGAGGGTTGTCTTCGATAGCCCCTCTGGAAGATCTGCTGGTTATGGTTTTGTTTCTTTTGCTACTCGAGAGGAAGCTCAAACTGCACTTTCTTCTTTGGAGGGCAAGGAATTGATGGGAAGACCCCTTCGCCTGAAATTCAGTGAAAGAAGTGTCAATGAATCAGAAACCCCAAAAGAAGACATTGTTGAAAGCCAACCTGAAGAATCATAG

Protein sequence

MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSRNPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES

Homology

[Close]

BLAST of IVF0010567.2 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.3e-33
Identity = 86/233 (36.91%), Postives = 133/233 (57.08%), Query Frame = 0


Query: 70  SAVQEVSLEEASEETQDVN-QKKKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQK-N 129
           SA +E  +EE  E  +  + +  +LY+ NLP+S++   + E+F + GTV++VEI+  +  
Sbjct: 92  SAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVT 151

Query: 130 GRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGPPPGE--- 189
            RSRGFAFVTM S +EA+ AI+ FD  ++ GR +KV F           P  P  GE   
Sbjct: 152 DRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNF-----------PEVPRGGEREV 211

Query: 190 --------------TVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGY 249
                         + +KLYV+NL+W + S  LRD F++    ++A+V++D  SGRS G+
Sbjct: 212 MSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGF 271

Query: 250 GFVSFATREEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPE 284
           GF++F++ E   +AL ++   EL GRPLRL  + +    S  P   +VE+ PE
Sbjct: 272 GFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKAPVSSPP---VVETSPE 310

[Close]

BLAST of IVF0010567.2 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.5e-30
Identity = 93/314 (29.62%), Postives = 158/314 (50.32%), Query Frame = 0


Query: 2   ATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSRN 61
           A   S+    +P +SS S+S+L +   P + KL  +  +PL+  +            +  
Sbjct: 15  AATASSAATFNPLLSSHSNSQLFYRFTPKSFKLVANCPNPLILHSNIRRHRFFCAAETEA 74

Query: 62  PGGGGRLCSAVQ------------EVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKE 121
                 + ++V+            E  +EE  + TQ   ++ +LY+ NLP++++  ++ +
Sbjct: 75  SSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQ 134

Query: 122 LFGQCGTVSDVEIIKQK-NGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKR 181
           +FG+ GTV DV+I+  K   RSRGF FVTM S +EA+ A+Q F+S +I GR +KV F   
Sbjct: 135 IFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNF--- 194

Query: 182 FKRPPPPKPPGPPPGE-----------------TVNKLYVSNLAWKVRSSNLRDFFSESF 241
                   P  P  GE                 + +K+Y  NL W + S  L+D F +  
Sbjct: 195 --------PEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQP 254

Query: 242 NPIAARVVFDSPSGRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRLKFSERSVNESE 286
             + A+V+++  +GRS G+GF+SF + E  Q+AL+++ G E+ GR LRL  +      + 
Sbjct: 255 GVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREKPTV 314

[Close]

BLAST of IVF0010567.2 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-29
Identity = 94/282 (33.33%), Postives = 146/282 (51.77%), Query Frame = 0


Query: 1   MATLESALPIIS--------PYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPIS 60
           MA+  S+L  +S        P  +S ++S   F+  PS++ L +S SS   S      ++
Sbjct: 1   MASSASSLHFLSLTPQTLPLPKPTSQTTSLSFFSLPPSSLNLSLSSSSSCFSSRFVRKVT 60

Query: 61  PISFNSSRNPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFG 120
              F+   +   G            ++  EE ++ +   K+++ NLP+S     + ELF 
Sbjct: 61  LSDFDQIEDVEDG------------DDGVEEERNFSPDLKIFVGNLPFSADSAALAELFE 120

Query: 121 QCGTVSDVEIIKQK-NGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKR 180
           + G V  VE+I  K  GRSRGF FVTM+S +E +AA Q+F+  E+ GR ++V        
Sbjct: 121 RAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-----SG 180

Query: 181 PPPPK---------PPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDS 240
           PPP K           G    ++ N++YV NLAW V    L   FSE    + A+VV+D 
Sbjct: 181 PPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDR 240

Query: 241 PSGRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRLKFSE 265
            SGRS G+GFV++++ EE   A+ SL+G +L GR +R+  +E
Sbjct: 241 DSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265

[Close]

BLAST of IVF0010567.2 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-28
Identity = 69/193 (35.75%), Postives = 117/193 (60.62%), Query Frame = 0


Query: 74  EVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKN-GRSRG 133
           EV  +E  EE Q+  +  KL++ NLP+ +    +  LF Q G V   E+I  ++  +SRG
Sbjct: 119 EVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRG 178

Query: 134 FAFVTMASPDEAQAAIQKFDSQEISGRVIKV-EFAKRFKRPPPPKPPGPPPGETVNKLYV 193
           F FVTM++ +EA+ A++ ++  +++GR++ V + A+R +RP  P    P   E   ++YV
Sbjct: 179 FGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERP----PRTFEQSYRIYV 238

Query: 194 SNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREEAQTALSSLEGK 253
            N+ W +  + L   FSE    ++ARVV+D  +GRS G+GFV+ A+  E   A+++L+G+
Sbjct: 239 GNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQ 298

Query: 254 ELMGRPLRLKFSE 265
            L GR +R+  +E
Sbjct: 299 SLDGRTIRVNVAE 307

[Close]

BLAST of IVF0010567.2 vs. ExPASy Swiss-Prot
Match: P49313 (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-27
Identity = 88/271 (32.47%), Postives = 138/271 (50.92%), Query Frame = 0


Query: 10  IISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSRNPGGGGRLC 69
           ++ P  +S ++S   F+  PS++ L +S  S   S      ++   F+   +   G    
Sbjct: 18  LLLPKPTSQTTSLSFFSLPPSSLNLSLSSPSSCFSSRFVRKVTLPDFDQIEDVEDG---- 77

Query: 70  SAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQK-NG 129
                   +E  EE ++ +   K+++ NL +S     + ELF + G V  VE+I  K  G
Sbjct: 78  --------DEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTG 137

Query: 130 RSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPK------------ 189
           RSRGF FVTM+S +E +AA Q+F+  E+ GR ++V        PPP K            
Sbjct: 138 RSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-----SGPPPEKRENSSFRENSSF 197

Query: 190 ---PPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFV 249
                G    ++ N++YV NLAW V    L   FSE    + A+VV+D  SGRS G+GFV
Sbjct: 198 RGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFV 257

Query: 250 SFATREEAQTALSSLEGKELMGRPLRLKFSE 265
           ++++ EE   A+ SL+G +L GR +R+  +E
Sbjct: 258 TYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271

[Close]

BLAST of IVF0010567.2 vs. ExPASy TrEMBL
Match: A0A1S3BK84 (28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490770 PE=4 SV=1)

HSP 1 Score: 547.7 bits (1410), Expect = 2.8e-152
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0


Query: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR 60
           MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR
Sbjct: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR 60

Query: 61  NPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSDV 120
           NPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSDV
Sbjct: 61  NPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSDV 120

Query: 121 EIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGP 180
           EIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGP
Sbjct: 121 EIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGP 180

Query: 181 PPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREE 240
           PPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREE
Sbjct: 181 PPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREE 240

Query: 241 AQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 286
           AQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES
Sbjct: 241 AQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 285

[Close]

BLAST of IVF0010567.2 vs. ExPASy TrEMBL
Match: A0A5A7UAR3 (28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001500 PE=4 SV=1)

HSP 1 Score: 539.3 bits (1388), Expect = 9.9e-150
Identity = 283/285 (99.30%), Postives = 283/285 (99.30%), Query Frame = 0


Query: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR 60
           MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR
Sbjct: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR 60

Query: 61  NPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSDV 120
           NPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSD 
Sbjct: 61  NPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSD- 120

Query: 121 EIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGP 180
            IIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGP
Sbjct: 121 -IIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGP 180

Query: 181 PPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREE 240
           PPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREE
Sbjct: 181 PPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREE 240

Query: 241 AQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 286
           AQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES
Sbjct: 241 AQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 283

[Close]

BLAST of IVF0010567.2 vs. ExPASy TrEMBL
Match: A0A0A0L1U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009490 PE=4 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 4.9e-141
Identity = 265/288 (92.01%), Postives = 276/288 (95.83%), Query Frame = 0


Query: 1   MATLESALPIISPYVSSSSS---SKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFN 60
           M T+ES LPIISPY+SSSSS   SKLCFNKLPS IKLRISFSSPLLSLNP TPISP SFN
Sbjct: 1   MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFN 60

Query: 61  SSRNPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTV 120
           SSRN GGG RLCSA+QEV+LEEASEE QDVNQK+KLYIFNLPWSLSVVDIKELFGQCGTV
Sbjct: 61  SSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTV 120

Query: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKP 180
           SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKR K+PPPPKP
Sbjct: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180

Query: 181 PGPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFAT 240
           PGPPPGETVNKLYVSNLAWKVRS+NLRDFFSE+FNPIAARVVFDSP+GRSAGYGFVSFAT
Sbjct: 181 PGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFAT 240

Query: 241 REEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 286
           REEAQTALSSLEGKELMGRPLRLKFSER+VNE+ETPKEDIVESQPEES
Sbjct: 241 REEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288

[Close]

BLAST of IVF0010567.2 vs. ExPASy TrEMBL
Match: A0A6J1E5Z7 (33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431035 PE=4 SV=1)

HSP 1 Score: 478.0 bits (1229), Expect = 2.7e-131
Identity = 250/288 (86.81%), Postives = 265/288 (92.01%), Query Frame = 0


Query: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISF---N 60
           MATLESA+PIIS Y+SSSSSSKL    LPSAIKLRISFSSPLLS NP T +SP+     N
Sbjct: 1   MATLESAIPIISQYISSSSSSKLSIRTLPSAIKLRISFSSPLLSFNPTTAVSPLPLFLTN 60

Query: 61  SSRNPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTV 120
            SRN GGGGR CSAVQEVSLEEASEE QDVNQK+KLYIFNLPWS SVVDIKE FGQCGTV
Sbjct: 61  PSRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEQFGQCGTV 120

Query: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKP 180
           +DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKR K+PPPPKP
Sbjct: 121 TDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180

Query: 181 PGPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFAT 240
           PGPPPGETV+KLYVSNLAWK RS+NLR+FFSE+FNPIAARVVFDSPSG+SAGYGFVSFAT
Sbjct: 181 PGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFAT 240

Query: 241 REEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 286
           REEA+TALSSLEGKELMGRPLRLKFSER+V +SETPKED VESQPEES
Sbjct: 241 REEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 288

[Close]

BLAST of IVF0010567.2 vs. ExPASy TrEMBL
Match: A0A6J1KZ42 (29 kDa ribonucleoprotein A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111500156 PE=4 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 5.1e-130
Identity = 252/294 (85.71%), Postives = 267/294 (90.82%), Query Frame = 0


Query: 1   MATLESALPIISPYV------SSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPI 60
           MATLESA+PIIS Y+      SSSSSSKL F+KLPSAIKLRISFSSPLLSLNP T +SP+
Sbjct: 1   MATLESAIPIISQYIASSSSSSSSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPL 60

Query: 61  SF---NSSRNPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELF 120
                N  RN GGG R CSAVQEVSLEEASEE QDVNQK+KLYIFNLPWS SVVDIKE F
Sbjct: 61  PLFLTNPWRNRGGGDRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEQF 120

Query: 121 GQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKR 180
           GQCGTV+DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKR K+
Sbjct: 121 GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK 180

Query: 181 PPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYG 240
           PPPPKPPGPPPGETV+KLYVSNLAWK RS+NLR+FFSE+FNPIAARVVFDSPSG+SAGYG
Sbjct: 181 PPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYG 240

Query: 241 FVSFATREEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 286
           FVSFATREEA+TALSSLEGKELMGRPLRLKFSERSV +SETPKED VESQPEES
Sbjct: 241 FVSFATREEAETALSSLEGKELMGRPLRLKFSERSVVKSETPKEDTVESQPEES 294

[Close]

BLAST of IVF0010567.2 vs. NCBI nr
Match: XP_008448669.1 (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo])

HSP 1 Score: 550 bits (1417), Expect = 4.45e-197
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0


Query: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR 60
           MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR
Sbjct: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR 60

Query: 61  NPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSDV 120
           NPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSDV
Sbjct: 61  NPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSDV 120

Query: 121 EIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGP 180
           EIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGP
Sbjct: 121 EIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGP 180

Query: 181 PPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREE 240
           PPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREE
Sbjct: 181 PPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREE 240

Query: 241 AQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 285
           AQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES
Sbjct: 241 AQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 285

[Close]

BLAST of IVF0010567.2 vs. NCBI nr
Match: KAA0053033.1 (28 kDa ribonucleoprotein [Cucumis melo var. makuwa] >TYK11488.1 28 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 541 bits (1395), Expect = 9.33e-194
Identity = 283/285 (99.30%), Postives = 283/285 (99.30%), Query Frame = 0


Query: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR 60
           MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR
Sbjct: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR 60

Query: 61  NPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSDV 120
           NPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSD 
Sbjct: 61  NPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSD- 120

Query: 121 EIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGP 180
            IIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGP
Sbjct: 121 -IIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGP 180

Query: 181 PPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREE 240
           PPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREE
Sbjct: 181 PPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREE 240

Query: 241 AQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 285
           AQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES
Sbjct: 241 AQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 283

[Close]

BLAST of IVF0010567.2 vs. NCBI nr
Match: XP_011650340.1 (29 kDa ribonucleoprotein A, chloroplastic [Cucumis sativus] >KGN55743.1 hypothetical protein Csa_011017 [Cucumis sativus])

HSP 1 Score: 513 bits (1320), Expect = 3.02e-182
Identity = 265/288 (92.01%), Postives = 276/288 (95.83%), Query Frame = 0


Query: 1   MATLESALPIISPYVSSSSSS---KLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFN 60
           M T+ES LPIISPY+SSSSSS   KLCFNKLPS IKLRISFSSPLLSLNP TPISP SFN
Sbjct: 1   MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFN 60

Query: 61  SSRNPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTV 120
           SSRN GGG RLCSA+QEV+LEEASEE QDVNQK+KLYIFNLPWSLSVVDIKELFGQCGTV
Sbjct: 61  SSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTV 120

Query: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKP 180
           SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKR K+PPPPKP
Sbjct: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180

Query: 181 PGPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFAT 240
           PGPPPGETVNKLYVSNLAWKVRS+NLRDFFSE+FNPIAARVVFDSP+GRSAGYGFVSFAT
Sbjct: 181 PGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFAT 240

Query: 241 REEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 285
           REEAQTALSSLEGKELMGRPLRLKFSER+VNE+ETPKEDIVESQPEES
Sbjct: 241 REEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288

[Close]

BLAST of IVF0010567.2 vs. NCBI nr
Match: XP_038904114.1 (33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida])

HSP 1 Score: 485 bits (1248), Expect = 2.62e-171
Identity = 256/287 (89.20%), Postives = 269/287 (93.73%), Query Frame = 0


Query: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR 60
           MATLESA+PIIS Y+SSSSS KL  NKLPSAIKLRISFSSPL  LNP T ISP+S + SR
Sbjct: 1   MATLESAIPIISQYISSSSS-KLRLNKLPSAIKLRISFSSPLRPLNPTTAISPLSLHLSR 60

Query: 61  NPGGGG--RLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVS 120
           N GGGG  RLCSAVQEVSLEEASE+ +DVNQKKKLYIFNLPWS SVVDIKELFGQCGTV+
Sbjct: 61  NHGGGGGSRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVT 120

Query: 121 DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPP 180
           DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKR K+PPPPKPP
Sbjct: 121 DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPP 180

Query: 181 GPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATR 240
           GPPP ETVNKLYVSNLAWKVRSSNLR+FFSE+FNP+AARVVFDSPSGRSAGYGFVSFATR
Sbjct: 181 GPPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATR 240

Query: 241 EEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 285
           EEA+TALSSLEGKELMGRPLRLKFSER+VNESETPKED VESQPEES
Sbjct: 241 EEAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDNVESQPEES 286

[Close]

BLAST of IVF0010567.2 vs. NCBI nr
Match: KAG6577717.1 (hypothetical protein SDJN03_25291, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015754.1 hypothetical protein SDJN02_23392 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 481 bits (1237), Expect = 1.79e-169
Identity = 252/288 (87.50%), Postives = 268/288 (93.06%), Query Frame = 0


Query: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISF---N 60
           MATLESA+PIIS Y+SSSSS KL F+KLPSAIKLRISFSSPLLSLNP T +SP+     N
Sbjct: 1   MATLESAIPIISQYISSSSS-KLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPLPLFLTN 60

Query: 61  SSRNPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTV 120
            SRN GGGGR CSAVQEVSLEEASEE QDVNQK+KLYIFNLPWS SVVDIKE FGQCGTV
Sbjct: 61  PSRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEHFGQCGTV 120

Query: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKP 180
           +DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKR K+PPPPKP
Sbjct: 121 TDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180

Query: 181 PGPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFAT 240
           PGPPPGETV+KLYVSNLAWK RS+NLR+FFSE+FNPIAARVVFDSPSG+SAGYGFVSFAT
Sbjct: 181 PGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFAT 240

Query: 241 REEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 285
           REEA+TALSSLEGKELMGRPLRLKFSER+V +SETPKED VESQPEES
Sbjct: 241 REEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 287

[Close]

BLAST of IVF0010567.2 vs. TAIR 10
Match: AT2G35410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 285.8 bits (730), Expect = 3.8e-77
Identity = 163/287 (56.79%), Postives = 208/287 (72.47%), Query Frame = 0


Query: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR 60
           MA LE++L I S   SSSSS    F+K  S++KL        LSL  P+ +SP+   S R
Sbjct: 1   MAVLEASLSIFSFSSSSSSSKPYLFSKRSSSLKL------TALSLRIPSNLSPVF--SLR 60

Query: 61  NPGGGGR-----LC-------SAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIK 120
           +     R     LC       SA +E S EE +EETQ+ N K+KL++FNLPWS+SV DI 
Sbjct: 61  SGSDNSRRLVSVLCSVAEKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDIS 120

Query: 121 ELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKR 180
           ELFGQCGTV++VEII+QK+G++RGFAFVTMAS +EAQAAI KFD+ ++SGR+I V FA+R
Sbjct: 121 ELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARR 180

Query: 181 FKRPPPPKP---PGPPPGETVNKLYVSNLAWKVRSSNLRDFFSES-FNPIAARVVFDSPS 240
           FK+P P  P   P P PG+T +KLYVSNLAWK RS++LR+ F+ + FNP++ARVVF  P 
Sbjct: 181 FKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPE 240

Query: 241 GRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRLKFSERSVNESE 272
           GRS+GYGFVSFATREEA+ A++ L GKE+MGRP+ LKFS RS +ESE
Sbjct: 241 GRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLRSASESE 279

[Close]

BLAST of IVF0010567.2 vs. TAIR 10
Match: AT4G09040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 141.0 bits (354), Expect = 1.5e-33
Identity = 80/215 (37.21%), Postives = 129/215 (60.00%), Query Frame = 0


Query: 76  SLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAF 135
           S   A E  ++   K +L   N+PW+ +  DI+ LF + G+V D+E+   K  R+RG  F
Sbjct: 79  SSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVF 138

Query: 136 VTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGPPPGETVNKLYVSNLA 195
           + MASP+EA  A++  +S E  GR +KV++AK  K+        P P  T N L+V+NLA
Sbjct: 139 IEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFN-LFVANLA 198

Query: 196 WKVRSSNLRDFF-SESFNPIAARVVFDSPSGRSAGYGFVSFATREEAQTALSSLEGKELM 255
           ++ R+ +L++FF +++ N ++  V+F     RS+GYGFVSF T+++A+ AL   +GK+ +
Sbjct: 199 FEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFL 258

Query: 256 GRPLRL----KFSERSVNESETPKEDIVESQPEES 286
           GRP+RL    +F +    E   P E+  E +P +S
Sbjct: 259 GRPIRLAKSKQFVKLQAKEGLQPPEEEAEEEPSQS 292

[Close]

BLAST of IVF0010567.2 vs. TAIR 10
Match: AT4G09040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 138.7 bits (348), Expect = 7.5e-33
Identity = 77/201 (38.31%), Postives = 124/201 (61.69%), Query Frame = 0


Query: 90  KKKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQ 149
           K +L   N+PW+ +  DI+ LF + G+V D+E+   K  R+RG  F+ MASP+EA  A++
Sbjct: 33  KTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALK 92

Query: 150 KFDSQEISGRVIKVEFAKRFKRPPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLRDFF-S 209
             +S E  GR +KV++AK  K+        P P  T N L+V+NLA++ R+ +L++FF +
Sbjct: 93  SLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFN-LFVANLAFEARAKHLKEFFDA 152

Query: 210 ESFNPIAARVVFDSPSGRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRL----KFSE 269
           ++ N ++  V+F     RS+GYGFVSF T+++A+ AL   +GK+ +GRP+RL    +F +
Sbjct: 153 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 212

Query: 270 RSVNESETPKEDIVESQPEES 286
               E   P E+  E +P +S
Sbjct: 213 LQAKEGLQPPEEEAEEEPSQS 232

[Close]

BLAST of IVF0010567.2 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-31
Identity = 93/314 (29.62%), Postives = 158/314 (50.32%), Query Frame = 0


Query: 2   ATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSRN 61
           A   S+    +P +SS S+S+L +   P + KL  +  +PL+  +            +  
Sbjct: 15  AATASSAATFNPLLSSHSNSQLFYRFTPKSFKLVANCPNPLILHSNIRRHRFFCAAETEA 74

Query: 62  PGGGGRLCSAVQ------------EVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKE 121
                 + ++V+            E  +EE  + TQ   ++ +LY+ NLP++++  ++ +
Sbjct: 75  SSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQ 134

Query: 122 LFGQCGTVSDVEIIKQK-NGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKR 181
           +FG+ GTV DV+I+  K   RSRGF FVTM S +EA+ A+Q F+S +I GR +KV F   
Sbjct: 135 IFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNF--- 194

Query: 182 FKRPPPPKPPGPPPGE-----------------TVNKLYVSNLAWKVRSSNLRDFFSESF 241
                   P  P  GE                 + +K+Y  NL W + S  L+D F +  
Sbjct: 195 --------PEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQP 254

Query: 242 NPIAARVVFDSPSGRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRLKFSERSVNESE 286
             + A+V+++  +GRS G+GF+SF + E  Q+AL+++ G E+ GR LRL  +      + 
Sbjct: 255 GVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREKPTV 314

[Close]

BLAST of IVF0010567.2 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 126.3 bits (316), Expect = 3.9e-29
Identity = 90/238 (37.82%), Postives = 128/238 (53.78%), Query Frame = 0


Query: 37  SFSSPLLSLNPPTPISPISFNSSRNPGGGGRLCSAVQEVSLEEASEETQD---------V 96
           S +  LL  N  TP  P+   SSR+     R+ S    V LEE  EE  D          
Sbjct: 26  SSNQTLLRFNFSTP-KPLLI-SSRSCSRRFRVLSETITVKLEE--EEKDDGASAVLDPPA 85

Query: 97  NQKKKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKN-GRSRGFAFVTMASPDEAQA 156
               KLY  NLP+++    + ++         VE++  ++ G+SRGFAFVTM++ ++   
Sbjct: 86  AVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNI 145

Query: 157 AIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLRDF 216
            I   D  E  GR +KV FA    +P P K P  P  ET +KL+V NL+W V S +L   
Sbjct: 146 IIDNLDGTEYLGRALKVNFA---DKPKPNKEPLYP--ETEHKLFVGNLSWTVTSESLAGA 205

Query: 217 FSESFNPIAARVVFDSPSGRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRLKFSE 265
           F E  + + ARVVFD  +GRS GYGFV ++++ E +TAL SL+G EL GR +R+  ++
Sbjct: 206 FRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQ 254

The following BLAST results are available for this feature:

BLAST of IVF0010567.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19684	7.3e-33	36.91	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q39061	1.5e-30	29.62	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
Q08935	1.7e-29	33.33	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
P19683	1.4e-28	35.75	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P49313	1.2e-27	32.47	30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]

BLAST of IVF0010567.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BK84	2.8e-152	100.00	28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490770 ...	[more]
A0A5A7UAR3	9.9e-150	99.30	28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0L1U2	4.9e-141	92.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009490 PE=4 SV=1	[more]
A0A6J1E5Z7	2.7e-131	86.81	33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KZ42	5.1e-130	85.71	29 kDa ribonucleoprotein A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1115...	[more]

BLAST of IVF0010567.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448669.1	4.45e-197	100.00	PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo]	[more]
KAA0053033.1	9.33e-194	99.30	28 kDa ribonucleoprotein [Cucumis melo var. makuwa] >TYK11488.1 28 kDa ribonucle...	[more]
XP_011650340.1	3.02e-182	92.01	29 kDa ribonucleoprotein A, chloroplastic [Cucumis sativus] >KGN55743.1 hypothet...	[more]
XP_038904114.1	2.62e-171	89.20	33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida]	[more]
KAG6577717.1	1.79e-169	87.50	hypothetical protein SDJN03_25291, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of IVF0010567.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35410.1	3.8e-77	56.79	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.1	1.5e-33	37.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.2	7.5e-33	38.31	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	1.1e-31	29.62	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	3.9e-29	37.82	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 92..164 e-value: 1.5E-26 score: 104.2 coord: 188..261 e-value: 1.9E-21 score: 87.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 189..259 e-value: 1.7E-17 score: 63.0 coord: 93..162 e-value: 1.1E-18 score: 66.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 91..168 score: 19.314274
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 187..265 score: 17.864565
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 71..182 e-value: 5.4E-29 score: 103.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 183..273 e-value: 1.3E-22 score: 81.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 263..279
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 263..285
None	No IPR available	PANTHER	PTHR48025:SF6	CHLOROPLAST, PUTATIVE-RELATED	coord: 1..276
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..276
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 84..176
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 172..265

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0010567	IVF0010567	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0010567.2-exon	IVF0010567.2-exon-tig00001265:63010..63372	exon
IVF0010567.2-exon	IVF0010567.2-exon-tig00001265:63765..63863	exon
IVF0010567.2-exon	IVF0010567.2-exon-tig00001265:64466..64756	exon
IVF0010567.2-exon	IVF0010567.2-exon-tig00001265:65407..65511	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0010567.2-cds	IVF0010567.2-cds-tig00001265:63010..63372	CDS
IVF0010567.2-cds	IVF0010567.2-cds-tig00001265:63765..63863	CDS
IVF0010567.2-cds	IVF0010567.2-cds-tig00001265:64466..64756	CDS
IVF0010567.2-cds	IVF0010567.2-cds-tig00001265:65407..65511	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0010567.2	IVF0010567.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003729	mRNA binding