IVF0010562.2 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0010562.2
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposable element Tf2
Location	chr04: 17162856 .. 17163104 (+)
Sequence length	249
RNA-Seq Expression	IVF0010562.2
Synteny	IVF0010562.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAGGCAAGAGGACGAGGCCCTTCTCGTCACCAAAAACCCAATCATGTCAACCCTTGTCGGAGCAAGCACTCAACAGGAATTCAATTCTGTTGTCAATAACGTCGTTGTGAACCTTTCAGACGATAACAACGATTTACCAGAAGACGCTTCCCCAGCCTCCGGTAATGATGTCGATGATCTTGACTATGACCCATACGAAGGCCTCGACATCAACGACCCATTTTTGGACACACAACCATATTAG

mRNA sequence

ATGACTAGGCAAGAGGACGAGGCCCTTCTCGTCACCAAAAACCCAATCATGTCAACCCTTGTCGGAGCAAGCACTCAACAGGAATTCAATTCTGTTGTCAATAACGTCGTTGTGAACCTTTCAGACGATAACAACGATTTACCAGAAGACGCTTCCCCAGCCTCCGGTAATGATGTCGATGATCTTGACTATGACCCATACGAAGGCCTCGACATCAACGACCCATTTTTGGACACACAACCATATTAG

Coding sequence (CDS)

ATGACTAGGCAAGAGGACGAGGCCCTTCTCGTCACCAAAAACCCAATCATGTCAACCCTTGTCGGAGCAAGCACTCAACAGGAATTCAATTCTGTTGTCAATAACGTCGTTGTGAACCTTTCAGACGATAACAACGATTTACCAGAAGACGCTTCCCCAGCCTCCGGTAATGATGTCGATGATCTTGACTATGACCCATACGAAGGCCTCGACATCAACGACCCATTTTTGGACACACAACCATATTAG

Protein sequence

MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY

Homology

[Close]

BLAST of IVF0010562.2 vs. ExPASy TrEMBL
Match: A0A5D3BCD5 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold535G00150 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1   MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 60
           MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD
Sbjct: 184 MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 243

Query: 61  DLDYDPYEGLDINDPFLDTQPY 83
           DLDYDPYEGLDINDPFLDTQPY
Sbjct: 244 DLDYDPYEGLDINDPFLDTQPY 265

[Close]

BLAST of IVF0010562.2 vs. ExPASy TrEMBL
Match: A0A5D3DW87 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003410 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1   MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 60
           MTRQEDEA L+TKN +MSTL GASTQQEFNSVVNNVVVNLSDDN+DLPEDASPAS NDVD
Sbjct: 338 MTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASPASVNDVD 397

Query: 61  DLDYDPYEGLDINDPFLDTQPY 83
           DLDYDPYEGLDINDPFLDTQPY
Sbjct: 398 DLDYDPYEGLDINDPFLDTQPY 419

[Close]

BLAST of IVF0010562.2 vs. ExPASy TrEMBL
Match: A0A5A7T975 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002220 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.1e-32
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1   MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 60
           MTRQEDEA L+TKN +MSTLVGASTQQEFNSVVNNVVVNLSDDN+DLPED SPAS N+VD
Sbjct: 230 MTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVD 289

Query: 61  DLDYDPYEGLDINDPFLDTQPY 83
           DLDYDPYEGLDINDPFLDTQPY
Sbjct: 290 DLDYDPYEGLDINDPFLDTQPY 311

[Close]

BLAST of IVF0010562.2 vs. ExPASy TrEMBL
Match: A0A5A7SR64 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001720 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 7.0e-32
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1   MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 60
           MTRQEDEA L+TKN +MSTL GASTQQEFNSVVNNVVVNLSDDN+DLPEDASPAS NDVD
Sbjct: 338 MTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASPASVNDVD 397

Query: 61  DLDYDPYEGLDINDPFLDTQPY 83
           DLDYDPY GLDINDPFLDTQPY
Sbjct: 398 DLDYDPYVGLDINDPFLDTQPY 419

[Close]

BLAST of IVF0010562.2 vs. ExPASy TrEMBL
Match: A0A5A7VIK9 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001410 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1   MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 60
           MTRQEDEA L+TKN +MSTL GASTQQEFNSVVNNVVVNLSDDN+DLPED SPAS N+VD
Sbjct: 338 MTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVD 397

Query: 61  DLDYDPYEGLDINDPFLDTQPY 83
           DLDYDPYEGLDINDPFLDTQPY
Sbjct: 398 DLDYDPYEGLDINDPFLDTQPY 419

[Close]

BLAST of IVF0010562.2 vs. NCBI nr
Match: KAA0058437.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ96699.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 162 bits (409), Expect = 1.25e-47
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1   MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 60
           MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD
Sbjct: 184 MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 243

Query: 61  DLDYDPYEGLDINDPFLDTQPY 82
           DLDYDPYEGLDINDPFLDTQPY
Sbjct: 244 DLDYDPYEGLDINDPFLDTQPY 265

[Close]

BLAST of IVF0010562.2 vs. NCBI nr
Match: KAA0038025.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (370), Expect = 3.02e-41
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1   MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 60
           MTRQEDEA L+TKN +MSTLVGASTQQEFNSVVNNVVVNLSDDN+DLPED SPAS N+VD
Sbjct: 230 MTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVD 289

Query: 61  DLDYDPYEGLDINDPFLDTQPY 82
           DLDYDPYEGLDINDPFLDTQPY
Sbjct: 290 DLDYDPYEGLDINDPFLDTQPY 311

[Close]

BLAST of IVF0010562.2 vs. NCBI nr
Match: KAA0066358.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (364), Expect = 4.17e-41
Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1   MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 60
           MTRQEDEA L+TKN +MSTL GASTQQEFNSVVNNVVVNLSDDN+DLPEDASPAS NDVD
Sbjct: 161 MTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASPASVNDVD 220

Query: 61  DLDYDPYEGLDINDPFLDTQPY 82
           DLDY+PYEGLDINDPFLD QPY
Sbjct: 221 DLDYNPYEGLDINDPFLDKQPY 242

[Close]

BLAST of IVF0010562.2 vs. NCBI nr
Match: KAA0054115.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK29405.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (359), Expect = 5.22e-41
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1   MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 60
           MTRQEDEA L+TKN +MSTL GAS QQEFNSVVNNVVVNLSDDN+DL EDASPAS NDVD
Sbjct: 107 MTRQEDEAFLLTKNAVMSTLAGASIQQEFNSVVNNVVVNLSDDNDDLLEDASPASVNDVD 166

Query: 61  DLDYDPYEGLDINDPFLDTQPY 82
           DLDYDPYEGLDINDPFLDTQPY
Sbjct: 167 DLDYDPYEGLDINDPFLDTQPY 188

[Close]

BLAST of IVF0010562.2 vs. NCBI nr
Match: TYK28077.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (375), Expect = 5.31e-41
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1   MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 60
           MTRQEDEA L+TKN +MSTL GASTQQEFNSVVNNVVVNLSDDN+DLPEDASPAS NDVD
Sbjct: 338 MTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASPASVNDVD 397

Query: 61  DLDYDPYEGLDINDPFLDTQPY 82
           DLDYDPYEGLDINDPFLDTQPY
Sbjct: 398 DLDYDPYEGLDINDPFLDTQPY 419

The following BLAST results are available for this feature:

BLAST of IVF0010562.2 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0010562.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BCD5	1.2e-36	100.00	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5D3DW87	1.1e-32	91.46	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003410 P...	[more]
A0A5A7T975	4.1e-32	90.24	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36...	[more]
A0A5A7SR64	7.0e-32	90.24	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001720 PE...	[more]
A0A5A7VIK9	1.2e-31	89.02	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of IVF0010562.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058437.1	1.25e-47	100.00	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ96699.1 Retrotransp...	[more]
KAA0038025.1	3.02e-41	90.24	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]
KAA0066358.1	4.17e-41	89.02	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0054115.1	5.22e-41	89.02	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK29405.1 Retrotransp...	[more]
TYK28077.1	5.31e-41	91.46	polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0010562.2 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..82

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0010562	IVF0010562	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0010562.2-exon	IVF0010562.2-exon-chr04:17162856..17163104	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0010562.2-cds	IVF0010562.2-cds-chr04:17162856..17163104	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0010562.2	IVF0010562.2-protein	polypeptide