IVF0009172.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0009172.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ty3/gypsy retrotransposon protein
Location	chr04: 29745132 .. 29745865 (+)
Sequence length	693
RNA-Seq Expression	IVF0009172.1
Synteny	IVF0009172.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTTTGCAGTATTGAGGGATAACCAGTTGTATGCTAATAGAAAAAAATGTGTGTTTGCCCATTCCCAAATACAATATCTAGGCCATATCATATCCAAAAAAGGGGTGGAAGCCGATCAAGATAAAGTACACAGCATGTTACAATGGCCCCAACCTAAGGATGTAACCGGATTAAGAGGGTTTTAGGGCTGACTGGGTATTATAGACGTTTTGTCAAAGGTTATGGAGAAATTGCAGCCCCCTTGACCAAATTGTTGCAGAAAAACTCTTTTAAATGGGATGAAGAAGCCACCGTTGCTTTTGAGAATTTGAAACTGGCTATGACCACAATACCAGTACTGGCACTCCCCGATTGGTCCCTGCCTTTCATGGTAGAAATTGATGCGTCAGGTAGCGGATTAGGAGCAGTACTATCACAGAATGGCCACCCCATCACGTTCTTTAGCCAAAAGCTATCGCCAAGGGCTCAATCCAAATCGATCTACAAAAGAGAATTGATGGCGGTAGTGTTGTCAGTACAAAAATGGCAGCATTATCTCTTGGGAAGAAAGTTCACCATTATGTCGGATCAAAAAGCTTTGAAGTTTCTGCTGGAACAGAGAGAGATCCAACCACAGTTCCAAAAATGGTTAACCAAGCTTTTGGGGTATGATTTTGAGATTCTGTACCAACCCGGACTACAAAATAAGGCAGCCGAAGCACTCCCAAGGTTGAAAACTTACCGGAGCTGA

mRNA sequence

ATGGTGTTTGCAGTATTGAGGGATAACCAGTTGTATGCTAATAGAAAAAAATGTGTGTTTGCCCATTCCCAAATACAATATCTAGGCCATATCATATCCAAAAAAGGGGTGGAAGCCGATCAAGATAAAGTACACAGCATGGTTTTAGGGCTGACTGGGTATTATAGACGTTTTGTCAAAGGTTATGGAGAAATTGCAGCCCCCTTGACCAAATTGTTGCAGAAAAACTCTTTTAAATGGGATGAAGAAGCCACCGTTGCTTTTGAGAATTTGAAACTGGCTATGACCACAATACCAGTACTGGCACTCCCCGATTGGTCCCTGCCTTTCATGGTAGAAATTGATGCGTCAGGTAGCGGATTAGGAGCAGTACTATCACAGAATGGCCACCCCATCACGTTCTTTAGCCAAAAGCTATCGCCAAGGGCTCAATCCAAATCGATCTACAAAAGAGAATTGATGGCGGTAGTGTTGTCAGTACAAAAATGGCAGCATTATCTCTTGGGAAGAAAGTTCACCATTATGTCGGATCAAAAAGCTTTGAAGTTTCTGCTGGAACAGAGAGAGATCCAACCACAGTTCCAAAAATGGTTAACCAAGCTTTTGGGGTATGATTTTGAGATTCTGTACCAACCCGGACTACAAAATAAGGCAGCCGAAGCACTCCCAAGGTTGAAAACTTACCGGAGCTGA

Coding sequence (CDS)

ATGGTGTTTGCAGTATTGAGGGATAACCAGTTGTATGCTAATAGAAAAAAATGTGTGTTTGCCCATTCCCAAATACAATATCTAGGCCATATCATATCCAAAAAAGGGGTGGAAGCCGATCAAGATAAAGTACACAGCATGGTTTTAGGGCTGACTGGGTATTATAGACGTTTTGTCAAAGGTTATGGAGAAATTGCAGCCCCCTTGACCAAATTGTTGCAGAAAAACTCTTTTAAATGGGATGAAGAAGCCACCGTTGCTTTTGAGAATTTGAAACTGGCTATGACCACAATACCAGTACTGGCACTCCCCGATTGGTCCCTGCCTTTCATGGTAGAAATTGATGCGTCAGGTAGCGGATTAGGAGCAGTACTATCACAGAATGGCCACCCCATCACGTTCTTTAGCCAAAAGCTATCGCCAAGGGCTCAATCCAAATCGATCTACAAAAGAGAATTGATGGCGGTAGTGTTGTCAGTACAAAAATGGCAGCATTATCTCTTGGGAAGAAAGTTCACCATTATGTCGGATCAAAAAGCTTTGAAGTTTCTGCTGGAACAGAGAGAGATCCAACCACAGTTCCAAAAATGGTTAACCAAGCTTTTGGGGTATGATTTTGAGATTCTGTACCAACCCGGACTACAAAATAAGGCAGCCGAAGCACTCCCAAGGTTGAAAACTTACCGGAGCTGA

Protein sequence

MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMVLGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATVAFENLKLAMTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHYLLGRKFTIMSDQKALKFLLEQREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRLKTYRS

Homology

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BLAST of IVF0009172.1 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 7.7e-41
Identity = 95/243 (39.09%), Postives = 141/243 (58.02%), Query Frame = 0


Query: 1   MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV------------ 60
           +VF  L D  L     KC F   +  +LGHI++  G++ +  KV ++V            
Sbjct: 383 LVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIR 442

Query: 61  --LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDE---EATVAFENLKLAMTTIPVLAL 120
             LGLTGYYR+F+  Y +IA P+T  L+K + K D    E   AFE LK  +   P+L L
Sbjct: 443 AFLGLTGYYRKFIPNYADIAKPMTSCLKKRT-KIDTQKLEYIEAFEKLKALIIRDPILQL 502

Query: 121 PDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKW 180
           PD+   F++  DAS   LGAVLSQNGHPI+F S+ L+    + S  ++EL+A+V + + +
Sbjct: 503 PDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTF 562

Query: 181 QHYLLGRKFTIMSDQKALKFLLEQREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALP 227
           +HYLLGR+F I SD + L++L   +E   + ++W  +L  Y F+I Y  G +N  A+AL 
Sbjct: 563 RHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALS 622

[Close]

BLAST of IVF0009172.1 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.6e-38
Identity = 87/243 (35.80%), Postives = 140/243 (57.61%), Query Frame = 0


Query: 1   MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSM------------- 60
           +VF  L    L     KC F   +  +LGH+++  G++ + +K+ ++             
Sbjct: 384 LVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIK 443

Query: 61  -VLGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWD---EEATVAFENLKLAMTTIPVLAL 120
             LGLTGYYR+F+  + +IA P+TK L+KN  K D    E   AF+ LK  ++  P+L +
Sbjct: 444 AFLGLTGYYRKFIPNFADIAKPMTKCLKKN-MKIDTTNPEYDSAFKKLKYLISEDPILKV 503

Query: 121 PDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKW 180
           PD++  F +  DAS   LGAVLSQ+GHP+++ S+ L+    + S  ++EL+A+V + + +
Sbjct: 504 PDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTF 563

Query: 181 QHYLLGRKFTIMSDQKALKFLLEQREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALP 227
           +HYLLGR F I SD + L +L   ++   +  +W  KL  +DF+I Y  G +N  A+AL 
Sbjct: 564 RHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALS 623

[Close]

BLAST of IVF0009172.1 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.1e-30
Identity = 71/130 (54.62%), Postives = 85/130 (65.38%), Query Frame = 0


Query: 1   MVFAVLRDNQLYANRKKCVFAHSQIQYLG--HIISKKGVEADQDKVHSMV---------- 60
           MV  +   +Q YANRKKC F   QI YLG  HIIS +GV AD  K+ +MV          
Sbjct: 6   MVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTE 65

Query: 61  ----LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATVAFENLKLAMTTIPVLALP 115
               LGLTGYYRRFVK YG+I  PLT+LL+KNS KW E A +AF+ LK A+TT+PVLALP
Sbjct: 66  LRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVLALP 125

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BLAST of IVF0009172.1 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-29
Identity = 81/251 (32.27%), Postives = 134/251 (53.39%), Query Frame = 0


Query: 2   VFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSM-------------- 61
           V   L D  +  +++K  F    ++YLG I+SK G ++D +KV ++              
Sbjct: 360 VLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRS 419

Query: 62  VLGLTGYYRRFVKGYGEIAAPLTKLL------------QKNSFKWDEEATVAFENLKLAM 121
            LGL  YYR F+K +  IA P+T +L            +K   +++E    AF+ L+  +
Sbjct: 420 FLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNIL 479

Query: 122 TTIPV-LALPDWSLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELM 181
            +  V L  PD+  PF +  DAS SG+GAVLSQ G PIT  S+ L    Q+ +  +REL+
Sbjct: 480 ASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELL 539

Query: 182 AVVLSVQKWQHYLLG-RKFTIMSDQKALKFLLEQREIQPQFQKWLTKLLGYDFEILYQPG 225
           A+V ++ K Q++L G R+  I +D + L F +  R    + ++W + +  ++ ++ Y+PG
Sbjct: 540 AIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPG 599

[Close]

BLAST of IVF0009172.1 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.0e-29
Identity = 76/256 (29.69%), Postives = 134/256 (52.34%), Query Frame = 0


Query: 1   MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSM------------- 60
           +V A L    L  N +K  F  +Q+++LG+I++  G++AD  KV ++             
Sbjct: 300 LVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELK 359

Query: 61  -VLGLTGYYRRFVKGYGEIAAPLTKLLQ------------KNSFKWDEEATVAFENLKLA 120
             LG+T YYR+F++ Y ++A PLT L +            K     DE A  +F +LK  
Sbjct: 360 RFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSI 419

Query: 121 MTTIPVLALPDWSLPFMVEIDASGSGLGAVLSQN----GHPITFFSQKLSPRAQSKSIYK 180
           + +  +LA P ++ PF +  DAS   +GAVLSQ+      PI + S+ L+   ++ +  +
Sbjct: 420 LCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIE 479

Query: 181 RELMAVVLSVQKWQHYLLGR-KFTIMSDQKALKFLLEQREIQPQFQKWLTKLLGYDFEIL 226
           +E++A++ S+   + YL G     + +D + L F L  R    + ++W  ++  Y+ E++
Sbjct: 480 KEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELI 539

[Close]

BLAST of IVF0009172.1 vs. ExPASy TrEMBL
Match: A0A5A7VJU2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00290 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 9.0e-109
Identity = 202/239 (84.52%), Postives = 215/239 (89.96%), Query Frame = 0


Query: 1   MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV------------ 60
           MVFA+LRDNQLYANRKKCVFAHSQIQYLGHIISK GVEADQDKV SM+            
Sbjct: 662 MVFAILRDNQLYANRKKCVFAHSQIQYLGHIISKHGVEADQDKVRSMLQWPQPQDITGLR 721

Query: 61  --LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATVAFENLKLAMTTIPVLALPDW 120
             LGLTGYYRRFVK YGEIAAPLTKLLQKN+FKWDE AT+AFE+LKLAMTTIPVL LPDW
Sbjct: 722 GFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATLAFESLKLAMTTIPVLVLPDW 781

Query: 121 SLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHY 180
           SLPFM+E DASGSGLGAVLSQNGHPI FFSQKLSPRAQSKSIY+RELMAVVLSVQKW+HY
Sbjct: 782 SLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMAVVLSVQKWRHY 841

Query: 181 LLGRKFTIMSDQKALKFLLEQREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL 226
           LLGR+FTI+SDQKALKFL EQRE+QPQFQKWLTKLLG DFEILYQPGLQNKAA+AL R+
Sbjct: 842 LLGRRFTIISDQKALKFLSEQREVQPQFQKWLTKLLGNDFEILYQPGLQNKAADALSRM 900

[Close]

BLAST of IVF0009172.1 vs. ExPASy TrEMBL
Match: A0A5D3CT96 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001230 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 2.0e-108
Identity = 201/239 (84.10%), Postives = 214/239 (89.54%), Query Frame = 0


Query: 1    MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV------------ 60
            MVFA LRDNQLYANRKKCVFAHSQI YLGH+ISK GVEADQDKV SM+            
Sbjct: 767  MVFATLRDNQLYANRKKCVFAHSQIHYLGHVISKHGVEADQDKVKSMLQWPKPKDVTGLR 826

Query: 61   --LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATVAFENLKLAMTTIPVLALPDW 120
              LGLTGYYRRFVKGYGEIAAPLTKLLQKN+FKWDE AT+AFENLK AM+TIPVLALPDW
Sbjct: 827  GFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFKWDENATLAFENLKSAMSTIPVLALPDW 886

Query: 121  SLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHY 180
            SLPFM+E DASGSGLGAVLSQN HPI FFSQKLS RAQ+KSIY+RELMAVVLSVQKW+HY
Sbjct: 887  SLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELMAVVLSVQKWRHY 946

Query: 181  LLGRKFTIMSDQKALKFLLEQREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL 226
            LLGR+FTIMSDQKALKFLLEQRE+QPQFQKWLTKLLGYDFEILYQPGLQNKAA+AL R+
Sbjct: 947  LLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRM 1005

[Close]

BLAST of IVF0009172.1 vs. ExPASy TrEMBL
Match: A0A5D3E325 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00690 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 7.6e-108
Identity = 200/239 (83.68%), Postives = 214/239 (89.54%), Query Frame = 0


Query: 1    MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV------------ 60
            MVFA LRDNQLYANRKKCVFAHSQI YLGH+ISK GVEADQDKV SM+            
Sbjct: 767  MVFATLRDNQLYANRKKCVFAHSQIHYLGHVISKHGVEADQDKVKSMLQWPKPKDVTGLR 826

Query: 61   --LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATVAFENLKLAMTTIPVLALPDW 120
              LGLTGYYRRFVKGYGEIAAPLTKLLQKN+FKWDE AT+AFE+LK AM+TIPVLALPDW
Sbjct: 827  GFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFKWDENATLAFESLKSAMSTIPVLALPDW 886

Query: 121  SLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHY 180
            SLPFM+E DASGSGLGAVLSQN HPI FFSQKLS RAQ+KSIY+RELMAVVLSVQKW+HY
Sbjct: 887  SLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELMAVVLSVQKWRHY 946

Query: 181  LLGRKFTIMSDQKALKFLLEQREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL 226
            LLGR+FTIMSDQKALKFLLEQRE+QPQFQKWLTKLLGYDFEILYQPGLQNKAA+AL R+
Sbjct: 947  LLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRM 1005

[Close]

BLAST of IVF0009172.1 vs. ExPASy TrEMBL
Match: A0A5D3BBH7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold549G00100 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 7.6e-108
Identity = 200/239 (83.68%), Postives = 214/239 (89.54%), Query Frame = 0


Query: 1    MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV------------ 60
            MVFA LRDNQLYANRKKCVFAHSQI YLGH+ISK GVEADQDKV SM+            
Sbjct: 767  MVFATLRDNQLYANRKKCVFAHSQIHYLGHVISKHGVEADQDKVKSMLQWPKPKDVTGLR 826

Query: 61   --LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATVAFENLKLAMTTIPVLALPDW 120
              LGLTGYYRRFVKGYGEIAAPLTKLLQKN+FKWDE AT+AFE+LK AM+TIPVLALPDW
Sbjct: 827  GFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFKWDENATLAFESLKSAMSTIPVLALPDW 886

Query: 121  SLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHY 180
            SLPFM+E DASGSGLGAVLSQN HPI FFSQKLS RAQ+KSIY+RELMAVVLSVQKW+HY
Sbjct: 887  SLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELMAVVLSVQKWRHY 946

Query: 181  LLGRKFTIMSDQKALKFLLEQREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL 226
            LLGR+FTIMSDQKALKFLLEQRE+QPQFQKWLTKLLGYDFEILYQPGLQNKAA+AL R+
Sbjct: 947  LLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRM 1005

[Close]

BLAST of IVF0009172.1 vs. ExPASy TrEMBL
Match: A0A5D3DZK6 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00310 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 7.6e-108
Identity = 200/239 (83.68%), Postives = 214/239 (89.54%), Query Frame = 0


Query: 1    MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV------------ 60
            MVFA LRDNQLYANRKKCVFAHSQI YLGH+ISK GVEADQDKV SM+            
Sbjct: 767  MVFATLRDNQLYANRKKCVFAHSQIHYLGHVISKHGVEADQDKVKSMLQWPKPKDVTGLR 826

Query: 61   --LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATVAFENLKLAMTTIPVLALPDW 120
              LGLTGYYRRFVKGYGEIAAPLTKLLQKN+FKWDE AT+AFE+LK AM+TIPVLALPDW
Sbjct: 827  GFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFKWDENATLAFESLKSAMSTIPVLALPDW 886

Query: 121  SLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHY 180
            SLPFM+E DASGSGLGAVLSQN HPI FFSQKLS RAQ+KSIY+RELMAVVLSVQKW+HY
Sbjct: 887  SLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELMAVVLSVQKWRHY 946

Query: 181  LLGRKFTIMSDQKALKFLLEQREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL 226
            LLGR+FTIMSDQKALKFLLEQRE+QPQFQKWLTKLLGYDFEILYQPGLQNKAA+AL R+
Sbjct: 947  LLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRM 1005

[Close]

BLAST of IVF0009172.1 vs. NCBI nr
Match: KAA0065995.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28942.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 405 bits (1040), Expect = 4.71e-132
Identity = 202/239 (84.52%), Postives = 215/239 (89.96%), Query Frame = 0


Query: 1   MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV------------ 60
           MVFA+LRDNQLYANRKKCVFAHSQIQYLGHIISK GVEADQDKV SM+            
Sbjct: 662 MVFAILRDNQLYANRKKCVFAHSQIQYLGHIISKHGVEADQDKVRSMLQWPQPQDITGLR 721

Query: 61  --LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATVAFENLKLAMTTIPVLALPDW 120
             LGLTGYYRRFVK YGEIAAPLTKLLQKN+FKWDE AT+AFE+LKLAMTTIPVL LPDW
Sbjct: 722 GFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATLAFESLKLAMTTIPVLVLPDW 781

Query: 121 SLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHY 180
           SLPFM+E DASGSGLGAVLSQNGHPI FFSQKLSPRAQSKSIY+RELMAVVLSVQKW+HY
Sbjct: 782 SLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMAVVLSVQKWRHY 841

Query: 181 LLGRKFTIMSDQKALKFLLEQREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL 225
           LLGR+FTI+SDQKALKFL EQRE+QPQFQKWLTKLLG DFEILYQPGLQNKAA+AL R+
Sbjct: 842 LLGRRFTIISDQKALKFLSEQREVQPQFQKWLTKLLGNDFEILYQPGLQNKAADALSRM 900

[Close]

BLAST of IVF0009172.1 vs. NCBI nr
Match: TYJ99689.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 394 bits (1012), Expect = 8.66e-132
Identity = 200/241 (82.99%), Postives = 210/241 (87.14%), Query Frame = 0


Query: 1   MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV------------ 60
           MVF VLRDNQLYANRKKCVFAHSQIQYLGH IS+KGVEADQ+KV SM+            
Sbjct: 320 MVFVVLRDNQLYANRKKCVFAHSQIQYLGHTISEKGVEADQEKVRSMLQWPQPKDITRLR 379

Query: 61  --LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATVAFENLKLAMTTIPVLALPDW 120
             L LTGYYRRFVKGYGEI APLTKLLQKNSFKWD EA +AFENLKLAMTT  VLALPDW
Sbjct: 380 GFLRLTGYYRRFVKGYGEITAPLTKLLQKNSFKWDGEAILAFENLKLAMTTNLVLALPDW 439

Query: 121 SLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHY 180
           SLPF+VE DASG GLGAVLSQNGHPI FFSQKLSPRAQ+KSIY RELM VVLSVQKW+HY
Sbjct: 440 SLPFVVETDASGIGLGAVLSQNGHPIAFFSQKLSPRAQTKSIYVRELMVVVLSVQKWRHY 499

Query: 181 LLGRKFTIMSDQKALKFLLEQREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRLK 227
           LLGRKFTIMSDQKALKFLLEQRE+QPQFQKWLT LLGYDFEILYQPGLQNKAA+AL R+ 
Sbjct: 500 LLGRKFTIMSDQKALKFLLEQREVQPQFQKWLTTLLGYDFEILYQPGLQNKAADALSRMD 559

[Close]

BLAST of IVF0009172.1 vs. NCBI nr
Match: KAE8637370.1 (hypothetical protein CSA_004463 [Cucumis sativus])

HSP 1 Score: 388 bits (996), Expect = 5.30e-131
Identity = 190/240 (79.17%), Postives = 213/240 (88.75%), Query Frame = 0


Query: 1   MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV------------ 60
           MVFAVLRDN L+AN+KKCV AHS+IQYLGHIIS KGV+AD++K+  MV            
Sbjct: 1   MVFAVLRDNHLFANKKKCVIAHSKIQYLGHIISSKGVQADEEKIKDMVKWPQPKDVTGLR 60

Query: 61  --LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATVAFENLKLAMTTIPVLALPDW 120
             LGL+GYYRRFVKGYGEIAAPLT+LLQKNSF WDE+AT AFE LK+AMTTIPVLALP+W
Sbjct: 61  GFLGLSGYYRRFVKGYGEIAAPLTRLLQKNSFAWDEQATEAFEKLKMAMTTIPVLALPNW 120

Query: 121 SLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHY 180
            LPF++E DASG+GLGAVLSQNGHPI FFSQKLS RAQ+KSIY+RELMAVVLSVQKW+HY
Sbjct: 121 DLPFLIETDASGTGLGAVLSQNGHPIAFFSQKLSTRAQAKSIYERELMAVVLSVQKWRHY 180

Query: 181 LLGRKFTIMSDQKALKFLLEQREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRLK 226
           LLGRKFTI+SDQKALKFLLEQRE+QPQFQKWLTKLLGYDFEILYQPGLQNKAA+AL R++
Sbjct: 181 LLGRKFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRME 240

[Close]

BLAST of IVF0009172.1 vs. NCBI nr
Match: KAA0063770.1 (Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa] >TYK05522.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 379 bits (973), Expect = 1.26e-130
Identity = 186/240 (77.50%), Postives = 207/240 (86.25%), Query Frame = 0


Query: 1   MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV------------ 60
           MVFAVLRDNQLYAN+KKCVFAHSQIQYLGH ISK+GV+AD+DK+ SM+            
Sbjct: 1   MVFAVLRDNQLYANKKKCVFAHSQIQYLGHQISKEGVKADEDKIRSMISWPRPSDVSGLR 60

Query: 61  --LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATVAFENLKLAMTTIPVLALPDW 120
             LGLTGYY +FV+GYGEIAAPLTKLLQKN+FKWD EA +AFENLK  MTT+PVLALPDW
Sbjct: 61  GFLGLTGYYHKFVQGYGEIAAPLTKLLQKNAFKWDNEAEIAFENLKTTMTTLPVLALPDW 120

Query: 121 SLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHY 180
           +LPF +E DASGSGLGAVLSQ  HPI FFSQKLS RAQ KSI +RELMAVVLS+QKW+HY
Sbjct: 121 NLPFTIETDASGSGLGAVLSQERHPIAFFSQKLSQRAQGKSICERELMAVVLSIQKWRHY 180

Query: 181 LLGRKFTIMSDQKALKFLLEQREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRLK 226
           LLGRKFTI+SDQKALKFLLEQRE+QPQFQKWLTKLLGYDFEILYQPGL NKA + L R++
Sbjct: 181 LLGRKFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLLNKAVDVLSRVE 240

[Close]

BLAST of IVF0009172.1 vs. NCBI nr
Match: KAA0063362.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 399 bits (1025), Expect = 1.78e-129
Identity = 197/239 (82.43%), Postives = 212/239 (88.70%), Query Frame = 0


Query: 1   MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMV------------ 60
           MVFA+LRDNQLYANRKKCVFAHSQI YLGHIISK+GVE DQDKV  M+            
Sbjct: 222 MVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKQGVETDQDKVRCMLQWPQPKDITGLR 281

Query: 61  --LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATVAFENLKLAMTTIPVLALPDW 120
             LG TGYYRRFVK YGEIAAPLTKLL KN+FKWDE AT+AFE+LK AMTTIPVLALPDW
Sbjct: 282 GFLGPTGYYRRFVKSYGEIAAPLTKLLHKNAFKWDENATLAFESLKSAMTTIPVLALPDW 341

Query: 121 SLPFMVEIDASGSGLGAVLSQNGHPITFFSQKLSPRAQSKSIYKRELMAVVLSVQKWQHY 180
           SLPFM+E DASGSGLGA+LSQNGHPI FFSQKLSPRAQSKSIY+RELMAVVLS+QKWQHY
Sbjct: 342 SLPFMIETDASGSGLGAILSQNGHPIAFFSQKLSPRAQSKSIYERELMAVVLSMQKWQHY 401

Query: 181 LLGRKFTIMSDQKALKFLLEQREIQPQFQKWLTKLLGYDFEILYQPGLQNKAAEALPRL 225
           LLGR+FTI+SDQKALKFLLEQRE+QPQFQKWLTKLLGYDFEILYQPGLQNKA +AL R+
Sbjct: 402 LLGRRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAVDALSRM 460

[Close]

BLAST of IVF0009172.1 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 134.0 bits (336), Expect = 1.5e-31
Identity = 71/130 (54.62%), Postives = 85/130 (65.38%), Query Frame = 0


Query: 1   MVFAVLRDNQLYANRKKCVFAHSQIQYLG--HIISKKGVEADQDKVHSMV---------- 60
           MV  +   +Q YANRKKC F   QI YLG  HIIS +GV AD  K+ +MV          
Sbjct: 6   MVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTE 65

Query: 61  ----LGLTGYYRRFVKGYGEIAAPLTKLLQKNSFKWDEEATVAFENLKLAMTTIPVLALP 115
               LGLTGYYRRFVK YG+I  PLT+LL+KNS KW E A +AF+ LK A+TT+PVLALP
Sbjct: 66  LRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVLALP 125

The following BLAST results are available for this feature:

BLAST of IVF0009172.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	7.7e-41	39.09	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	3.6e-38	35.80	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P92523	2.1e-30	54.62	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ...	[more]
P10401	1.4e-29	32.27	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
Q8I7P9	4.0e-29	29.69	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]

BLAST of IVF0009172.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VJU2	9.0e-109	84.52	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3CT96	2.0e-108	84.10	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3E325	7.6e-108	83.68	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BBH7	7.6e-108	83.68	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DZK6	7.6e-108	83.68	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of IVF0009172.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065995.1	4.71e-132	84.52	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28942.1 Ty3/gyp...	[more]
TYJ99689.1	8.66e-132	82.99	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAE8637370.1	5.30e-131	79.17	hypothetical protein CSA_004463 [Cucumis sativus]	[more]
KAA0063770.1	1.26e-130	77.50	Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa] >TYK05522.1 Transposon T...	[more]
KAA0063362.1	1.78e-129	82.43	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0009172.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.5e-31	54.62	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..39 e-value: 3.0E-9 score: 39.2
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 40..108 e-value: 2.0E-20 score: 74.6
None	No IPR available	GENE3D	3.10.20.370		coord: 109..175 e-value: 8.4E-10 score: 40.5
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 3..200
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 3..200
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 112..225 e-value: 1.09411E-45 score: 146.484
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 80..174 e-value: 7.1E-31 score: 106.2
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..210

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0009172	IVF0009172	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0009172.1-exon	IVF0009172.1-exon-chr04:29745132..29745271	exon
IVF0009172.1-exon	IVF0009172.1-exon-chr04:29745313..29745865	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0009172.1-cds	IVF0009172.1-cds-chr04:29745132..29745271	CDS
IVF0009172.1-cds	IVF0009172.1-cds-chr04:29745313..29745865	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0009172.1	IVF0009172.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding