IVF0008708.2 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0008708.2
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	protein DELETION OF SUV3 SUPPRESSOR 1(I)-like
Location	chr03: 21204325 .. 21208241 (+)
Sequence length	740
RNA-Seq Expression	IVF0008708.2
Synteny	IVF0008708.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAGATCTAATTGTCATGAAATTGAATTCCTAAAGTAATAATGATTTAGAAAGCATCGGCTTGCCGACTTGTCTCTCAAGATATCTCGACTCATTTTTCCAATAGAAAATCAATCAATACCAGACTCCCTCGATCTTTCCTGCTCCACGGCTCTCTCATCACAACTCTCTCCCAAGGTTCTTAGCTTCTTTCTCTCTCCATTTTTATCTGCTTTCAATTTTAATGTTACATTTCTCACTCTGGACTATACTTTACTGTTTGTCTTTTGAATTATGATTTAGTTGATTCCTTGCTTTATAATTCCTGCTGTGATTCTCCTCAGAATTAGGAGGGAAGAGAACGAACATATGTATTTTCTTATTTTTCCTTTTGCCTCCACTCCTCTCTTCTGGGTCTGCTTTCTTCTCTGTTTTTGTCTAGAATCTGCAACCAGAAATGTAGAATGGGGCCAGCTCAGTGTGGCTGCGTGATAAGAACTGTTTACTTTCTGTGCTTTCAAATATGCATTTGTAGAACAGAAAAGTTTCAGAACTCGAGACTGTATATTTGATATTCGAAGGCTACCGTTTTCAAAGATATATTTTTCCTTTTCGAGTTGGCTCCCTATGCTTCAAATTTTAGTACTATAAAAAAATGCAAAAATCCCATTTAGTTCTTTGAATTATCTTAGTACAACTTTTAAGTGTAACTATGGATGATGGAAAAGGGGCCTAGCCTGTGAATTGGGATGTGGTTTTGAAGTCTGTGAACATGAGCTTGATCTTGAGAATTTAAGGACTCAGTTACTAAAACCTGTTGGTGAAATGGATTTAACATTTCCTTCTTGAGTCTTAAACCAGTGGTGAAGGATTATCGCGAGTAAGTACGGTGTCACCCCTTTGAGTGGAAGGATATCTCTTTTGACCTTCCTTCTTTCTCTCATTTAGTCTATTGTGTTGTGGGGAAGGGGATGAAATCGTGCTTTTGGGGTAGGATCAGTGGTAGGAGATAGACCCCTCATCTTTACCATTTATCCTCTTTGAAAAACTGTTTCGTGGATGAGGTTTTAGTTTTGTCTGGGACTTTGGGAGCTCCTCTCTTTGTCGTGCGGCTTTCATTGTTCTTTAGAGAAAGGATGGTCAGCCCTTCTGTCTCTGATAAAGGAGTTTGATTAGGATCAGTAGAAGGGATGTGCGTATTTGATGCTCTAACCCTTCTGGAGGTCTCTCTTGTAGTTTTTCTTTTTTTCAATTGTTTGATGGACCCTTCACCCAATATGGATTTTTTTTCTTAGCTCTCTTGAATATTAAGATTCCAAAGAAGGTTAAGTTCTTTGTCTATCAGGTCATCCATAGGCAATGTAACACTCTTGATTAAGTCTTGAGAAAGCAACCTACATTAATTGGCCCATTTTTTTAACCCTCCTTTGGAAGGCAAAGGAAGACCTGGATCATATTTTTTGAAGATTGTATGAACGATTTTTGGAGGCATTTGGCTTTTCATTAGCCCACTCTAGAGACCTGAACATTTCTCATGGTTCCTTCTCCATTTGCGTTTTAAGAAGGGTTGTTTCTTATGGCTTGCCGGAGTGTGCTATATTGTAGGATTTTTGAGGAGAGAGGAATAATTGAGTGTTTAGAGGATTGGAAAGAGATCCAAGTATGTTTGGTCCTTTCTTTGTTTCCATGTTTCTCTTTGGACTTCGGTGGTTTTTTGCAACTACCGAATAGGTATTATTTAATAGAACGAGAAAACCCTTCCTTTCTTGGCCTCCCTTTTCATGGTTTTTTCCTCTTTCTGTGTGCTCATTCATTTTTTCTCAATGAAAGGTTGTTTTTTCATTAAACAACAAAAAGGAAAAAAAGAAAGAAAAATGTGCTTTCAGTTGTTTATCTTTCACTTGTTAATGTAATTCAAAAATTTTGCTGATCTTTCAGATTACAAAGATTTGTAGATCAATTTGAGCTTTGTGATGGCAACTGAACTGAAAGCAGCTTCTGAGGAAGTGAAAGTTGACCTATTTGAGGATGATGACGAGTTTGAAGAGTTTGAGATTAATGAAGGTATGGCTTGTAATTATTTTTATTTTTTATTCCTTCCCTTGTTTGGATTCCTTTATTGCAGGTTTTAATTGCTCCCATTTTTCATTTATTAGTGCCTGTTGTGCAAGATCTCCTTTCTTTCAGCCAAATGAATGTGAATGTTATGCAACGGGCTGGAAATCCTGTTACTGACCCAATCCTAACTGCTAGTATTCTTCATTTGGATGCCTCGTTACTGTTGCTTGTTCATTATTTCTTCATCTATCAATGAAGCAGTTCTGTCTCTGTCAAAAAAAGAAAAAAGAAAAAAAAACATTGTTTCGAAGTAAAGTCGTGGAATCCAGTGTCTGAAACGAATAAGCCAGAATGTTTGTAAACTCAATTGCAATAGTAATAATCAATGAAAAAAGCGTATTGAAAAAGAAAAGTTGGATTAATACATGGTTTTAAAATACATGTCCCTCAAGTATATATTTGGATGGACCCTTTTCTCTTTAAAAATTAATCTATTAAAATCCTCTAGATGTTTGTTTGAAGCTAATGTAGTGACTTATTTCTTGAAAAAAGTTTATAGAATTACTTGTTTTCTTGGAAGAAAAAAAAGTTTATTTGGAGTTGATTTCTTCTGTGACATACATTTTCCTTTTAAGCTCAGAAGTGCTTGAAGTGTTATATAAGGAAGCTGATAGAATAGCTTTTGGATGGAGTATATTCAGATTTTGCTTTGATTACTTGAAATGTTCTTGGAAGAGTAAACTTTTTCCAACTTATATTCCTAAAAGAGAGAGAGAGAGATGACCATAAAACCACTTCTCTTTGTTCAGTGAAAGTGGGCGCTTTTCCCTATTTTTCAGAAATGGTTACGGTTACTTGATTGTTTGGAAGATAACAAAGAATGTGTTTTGTATTCAGACCATATGGTTGCTCGATAATGTTGTCAACTGAAACTACGATTTGACAGTCCTACAAGTCTTGCATATGTGACGTTAGCCTAACACTGTTAATTGTTAACTTAATGTTGTATGTTCTATACATGTCACAATCGCAATGTGTTAGCAAAAAATGCTTGTAAGTTTGGAAATGAAGTGAAAGATTTGATGGATTGCCATTTTGATCTTGTCTGAGAGCTTTCATGTATTTATTATTATTTTTTTTTTATCTAAATAAGAGTGTTTAGGTTTCTTAAGTGCACCTATATATATATGCAACGGGCATAAGGTCTTTTAACACATCCCTCCTAAAGAACTTTTTACTTATTCACATGCTCTTGGGAAATAGTAAGGCAAGTCATGGTGGTTCTTTTTCCTCCTTTTCAAAGTTATTTTGCAACTCTAATATGTCCTCAGATTCTGGTGTAAAGCGTATTACTCTTCTTGTTATTCTTAGCCTAACATCTTTAAGCCTTATGATATTTTTATAATCTTTCCTTCTGGTTCTCACTGGTCAAATGGATTACAGAGTGGGAAGTGAAGGAAGGCAAAGAAATCACTCAGCAATGGGAAGATGACTGGGATGATGATGATGTTAATGATGACTTCTCGTTGCAGCTGAAGAGAGAATTGGAGAACAATGCTGAGAAAAAATGAAGAGAATTTAGGCACTTTCTTTTTTTCATGTCAACACCTATGTTTAATTTGCACTGTTTGACCTTCAAAGACAGTTTTATTTTGCCTTCTATCACTCAAATAGTGTCTAACATCGGCATATTGAATACCTATGGCCTGTCATTGTCCAGAAGATGCGGCGACCAGAGATTAATTGTGTGGTAGTTACCTATTCAGAATTTGAAGTTTTACTGAAAAAAACCAAAAGTGATTTAAGCAATTGGAATTATAGATTGTTTAAACGATATAATTGTCCAAGAAAGTCAAATTTTAATGATCATAAATTTTTAT

mRNA sequence

AATAGATCTAATTGTCATGAAATTGAATTCCTAAAGTAATAATGATTTAGAAAGCATCGGCTTGCCGACTTGTCTCTCAAGATATCTCGACTCATTTTTCCAATAGAAAATCAATCAATACCAGACTCCCTCGATCTTTCCTGCTCCACGGCTCTCTCATCACAACTCTCTCCCAAGATTACAAAGATTTGTAGATCAATTTGAGCTTTGTGATGGCAACTGAACTGAAAGCAGCTTCTGAGGAAGTGAAAGTTGACCTATTTGAGGATGATGACGAGTTTGAAGAGTTTGAGATTAATGAAGAGTGGGAAGTGAAGGAAGGCAAAGAAATCACTCAGCAATGGGAAGATGACTGGGATGATGATGATGTTAATGATGACTTCTCGTTGCAGCTGAAGAGAGAATTGGAGAACAATGCTGAGAAAAAATGAAGAGAATTTAGGCACTTTCTTTTTTTCATGTCAACACCTATGTTTAATTTGCACTGTTTGACCTTCAAAGACAGTTTTATTTTGCCTTCTATCACTCAAATAGTGTCTAACATCGGCATATTGAATACCTATGGCCTGTCATTGTCCAGAAGATGCGGCGACCAGAGATTAATTGTGTGGTAGTTACCTATTCAGAATTTGAAGTTTTACTGAAAAAAACCAAAAGTGATTTAAGCAATTGGAATTATAGATTGTTTAAACGATATAATTGTCCAAGAAAGTCAAATTTTAATGATCATAAATTTTTAT

Coding sequence (CDS)

ATGGCAACTGAACTGAAAGCAGCTTCTGAGGAAGTGAAAGTTGACCTATTTGAGGATGATGACGAGTTTGAAGAGTTTGAGATTAATGAAGAGTGGGAAGTGAAGGAAGGCAAAGAAATCACTCAGCAATGGGAAGATGACTGGGATGATGATGATGTTAATGATGACTTCTCGTTGCAGCTGAAGAGAGAATTGGAGAACAATGCTGAGAAAAAATGA

Protein sequence

MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNAEKK

Homology

[Close]

BLAST of IVF0008708.2 vs. ExPASy Swiss-Prot
Match: Q9FL96 (Protein DSS1 HOMOLOG ON CHROMOSOME V OS=Arabidopsis thaliana OX=3702 GN=DSS1(V) PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.2e-21
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFSL 60
          MA E KAA E VKVDLFEDDDEFEEFEINE+W E +E KE++ QWEDDWDDDDV+DDFS 
Sbjct: 1  MAAEPKAAVEVVKVDLFEDDDEFEEFEINEDWLEKEEVKEVSLQWEDDWDDDDVSDDFSR 60

Query: 61 QLKRELENNAEKK 73
          QLK+ELEN +EKK
Sbjct: 61 QLKKELENASEKK 73

[Close]

BLAST of IVF0008708.2 vs. ExPASy Swiss-Prot
Match: Q9XIR8 (Protein DELETION OF SUV3 SUPPRESSOR 1(I) OS=Arabidopsis thaliana OX=3702 GN=DSS1(I) PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.8e-20
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MATELKAASEE-VKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFS 60
          MA E KAA+ E VK+DLFEDDDEFEEFEINE+W E +E KE++QQWEDDWDDDDVNDDFS
Sbjct: 1  MAAEPKAATAEVVKMDLFEDDDEFEEFEINEDWLEKEEVKEVSQQWEDDWDDDDVNDDFS 60

Query: 61 LQLKRELENNAEKK 73
           QL++ELEN  +KK
Sbjct: 61 RQLRKELENGTDKK 74

[Close]

BLAST of IVF0008708.2 vs. ExPASy Swiss-Prot
Match: Q3ZBR6 (26S proteasome complex subunit SEM1 OS=Bos taurus OX=9913 GN=SEM1 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.3e-06
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 10 EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNA 69
          + V + L E+DDEFEEF   E+W   +  E    WED+WDDD+V DDFS QL+ ELE + 
Sbjct: 6  QPVDLGLLEEDDEFEEFPA-EDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAELEKHG 65

Query: 70 EK 72
           K
Sbjct: 66 YK 66

[Close]

BLAST of IVF0008708.2 vs. ExPASy Swiss-Prot
Match: P60896 (26S proteasome complex subunit SEM1 OS=Homo sapiens OX=9606 GN=SEM1 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.3e-06
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 10 EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNA 69
          + V + L E+DDEFEEF   E+W   +  E    WED+WDDD+V DDFS QL+ ELE + 
Sbjct: 6  QPVDLGLLEEDDEFEEFPA-EDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAELEKHG 65

Query: 70 EK 72
           K
Sbjct: 66 YK 66

[Close]

BLAST of IVF0008708.2 vs. ExPASy Swiss-Prot
Match: P60897 (26S proteasome complex subunit SEM1 OS=Mus musculus OX=10090 GN=Sem1 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.3e-06
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 10 EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNA 69
          + V + L E+DDEFEEF   E+W   +  E    WED+WDDD+V DDFS QL+ ELE + 
Sbjct: 6  QPVDLGLLEEDDEFEEFPA-EDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAELEKHG 65

Query: 70 EK 72
           K
Sbjct: 66 YK 66

[Close]

BLAST of IVF0008708.2 vs. ExPASy TrEMBL
Match: A0A0A0KIG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G358050 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.7e-29
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60
          MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ
Sbjct: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60

Query: 61 LKRELENNAEKK 73
          LKRELENNAEKK
Sbjct: 61 LKRELENNAEKK 72

[Close]

BLAST of IVF0008708.2 vs. ExPASy TrEMBL
Match: A0A1S3CMK4 (protein DSS1 HOMOLOG ON CHROMOSOME V-like OS=Cucumis melo OX=3656 GN=LOC103502626 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.7e-29
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60
          MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ
Sbjct: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60

Query: 61 LKRELENNAEKK 73
          LKRELENNAEKK
Sbjct: 61 LKRELENNAEKK 72

[Close]

BLAST of IVF0008708.2 vs. ExPASy TrEMBL
Match: A0A6J1KGK6 (protein DELETION OF SUV3 SUPPRESSOR 1(I)-like OS=Cucurbita maxima OX=3661 GN=LOC111494033 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.1e-28
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60
          MATE+KAA+EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ
Sbjct: 1  MATEMKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60

Query: 61 LKRELENNAEKK 73
          LKRELE+N EKK
Sbjct: 61 LKRELESNVEKK 72

[Close]

BLAST of IVF0008708.2 vs. ExPASy TrEMBL
Match: A0A6J1DJN7 (protein DSS1 HOMOLOG ON CHROMOSOME V-like OS=Momordica charantia OX=3673 GN=LOC111020683 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.5e-27
Identity = 66/72 (91.67%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60
          MATELKA +EE+KVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFS+Q
Sbjct: 1  MATELKAVTEEMKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSVQ 60

Query: 61 LKRELENNAEKK 73
          L+RELENN EKK
Sbjct: 61 LRRELENNGEKK 72

[Close]

BLAST of IVF0008708.2 vs. ExPASy TrEMBL
Match: A0A6J1KMT1 (protein DSS1 HOMOLOG ON CHROMOSOME V-like OS=Cucurbita maxima OX=3661 GN=LOC111496037 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.0e-27
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60
          MATE KA +EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ
Sbjct: 1  MATEPKAGTEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60

Query: 61 LKRELENNAEKK 73
          LKRELE+NAE+K
Sbjct: 61 LKRELEDNAERK 72

[Close]

BLAST of IVF0008708.2 vs. NCBI nr
Match: XP_004144232.1 (protein DSS1 HOMOLOG ON CHROMOSOME V [Cucumis sativus] >XP_008464856.1 PREDICTED: protein DSS1 HOMOLOG ON CHROMOSOME V-like [Cucumis melo] >KGN47541.1 hypothetical protein Csa_019014 [Cucumis sativus])

HSP 1 Score: 135 bits (340), Expect = 8.36e-40
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60
          MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ
Sbjct: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60

Query: 61 LKRELENNAEKK 72
          LKRELENNAEKK
Sbjct: 61 LKRELENNAEKK 72

[Close]

BLAST of IVF0008708.2 vs. NCBI nr
Match: XP_023546762.1 (protein DSS1 HOMOLOG ON CHROMOSOME V-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130 bits (327), Expect = 8.06e-38
Identity = 69/72 (95.83%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60
          MATELKAA+EEVKVDLFEDDDEFEEFEI+EEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ
Sbjct: 1  MATELKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60

Query: 61 LKRELENNAEKK 72
          LKRELE+NAEKK
Sbjct: 61 LKRELESNAEKK 72

[Close]

BLAST of IVF0008708.2 vs. NCBI nr
Match: XP_022999790.1 (protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita maxima])

HSP 1 Score: 130 bits (326), Expect = 1.15e-37
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60
          MATE+KAA+EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ
Sbjct: 1  MATEMKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60

Query: 61 LKRELENNAEKK 72
          LKRELE+N EKK
Sbjct: 61 LKRELESNVEKK 72

[Close]

BLAST of IVF0008708.2 vs. NCBI nr
Match: XP_038884052.1 (protein DSS1 HOMOLOG ON CHROMOSOME V-like [Benincasa hispida])

HSP 1 Score: 129 bits (325), Expect = 1.82e-37
Identity = 72/76 (94.74%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEW----EVKEGKEITQQWEDDWDDDDVNDD 60
          MATELKAASEEVKVDLFEDDDEFEEFEINEEW    EVKEGKEITQQWEDDWDDDDVNDD
Sbjct: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWITEWEVKEGKEITQQWEDDWDDDDVNDD 60

Query: 61 FSLQLKRELENNAEKK 72
          FSLQLKRELENNAEKK
Sbjct: 61 FSLQLKRELENNAEKK 76

[Close]

BLAST of IVF0008708.2 vs. NCBI nr
Match: KAG6599102.1 (Protein DSS1-like ON CHROMOSOME V, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128 bits (321), Expect = 6.64e-37
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60
          MATE KAA+EEVKVDLFEDDDEFEEFEI+EEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ
Sbjct: 1  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60

Query: 61 LKRELENNAEKK 72
          LKRELE+NAEKK
Sbjct: 61 LKRELESNAEKK 72

[Close]

BLAST of IVF0008708.2 vs. TAIR 10
Match: AT5G45010.1 (DSS1 homolog on chromosome V )

HSP 1 Score: 100.9 bits (250), Expect = 4.4e-22
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFSL 60
          MA E KAA E VKVDLFEDDDEFEEFEINE+W E +E KE++ QWEDDWDDDDV+DDFS 
Sbjct: 1  MAAEPKAAVEVVKVDLFEDDDEFEEFEINEDWLEKEEVKEVSLQWEDDWDDDDVSDDFSR 60

Query: 61 QLKRELENNAEKK 73
          QLK+ELEN +EKK
Sbjct: 61 QLKKELENASEKK 73

[Close]

BLAST of IVF0008708.2 vs. TAIR 10
Match: AT1G64750.1 (deletion of SUV3 suppressor 1(I) )

HSP 1 Score: 99.4 bits (246), Expect = 1.3e-21
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MATELKAASEE-VKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFS 60
          MA E KAA+ E VK+DLFEDDDEFEEFEINE+W E +E KE++QQWEDDWDDDDVNDDFS
Sbjct: 1  MAAEPKAATAEVVKMDLFEDDDEFEEFEINEDWLEKEEVKEVSQQWEDDWDDDDVNDDFS 60

Query: 61 LQLKRELENNAEKK 73
           QL++ELEN  +KK
Sbjct: 61 RQLRKELENGTDKK 74

[Close]

BLAST of IVF0008708.2 vs. TAIR 10
Match: AT1G64750.2 (deletion of SUV3 suppressor 1(I) )

HSP 1 Score: 99.4 bits (246), Expect = 1.3e-21
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MATELKAASEE-VKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFS 60
          MA E KAA+ E VK+DLFEDDDEFEEFEINE+W E +E KE++QQWEDDWDDDDVNDDFS
Sbjct: 1  MAAEPKAATAEVVKMDLFEDDDEFEEFEINEDWLEKEEVKEVSQQWEDDWDDDDVNDDFS 60

Query: 61 LQLKRELENNAEKK 73
           QL++ELEN  +KK
Sbjct: 61 RQLRKELENGTDKK 74

[Close]

BLAST of IVF0008708.2 vs. TAIR 10
Match: AT1G64750.3 (deletion of SUV3 suppressor 1(I) )

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-15
Identity = 55/115 (47.83%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 1   MATELKAASEE-VKVDLFEDDDEFEEFEINE----------------------------- 60
           MA E KAA+ E VK+DLFEDDDEFEEFEINE                             
Sbjct: 1   MAAEPKAATAEVVKMDLFEDDDEFEEFEINEVDSSDLTSSCIERIDKDGLVYELSRSDMK 60

Query: 61  ------------EW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNAEKK 73
                       +W E +E KE++QQWEDDWDDDDVNDDFS QL++ELEN  +KK
Sbjct: 61  TNLFDVNFRCEIDWLEKEEVKEVSQQWEDDWDDDDVNDDFSRQLRKELENGTDKK 115

The following BLAST results are available for this feature:

BLAST of IVF0008708.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FL96	6.2e-21	76.71	Protein DSS1 HOMOLOG ON CHROMOSOME V OS=Arabidopsis thaliana OX=3702 GN=DSS1(V) ...	[more]
Q9XIR8	1.8e-20	74.32	Protein DELETION OF SUV3 SUPPRESSOR 1(I) OS=Arabidopsis thaliana OX=3702 GN=DSS1...	[more]
Q3ZBR6	7.3e-06	50.00	26S proteasome complex subunit SEM1 OS=Bos taurus OX=9913 GN=SEM1 PE=3 SV=1	[more]
P60896	7.3e-06	50.00	26S proteasome complex subunit SEM1 OS=Homo sapiens OX=9606 GN=SEM1 PE=1 SV=1	[more]
P60897	7.3e-06	50.00	26S proteasome complex subunit SEM1 OS=Mus musculus OX=10090 GN=Sem1 PE=3 SV=1	[more]

BLAST of IVF0008708.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIG9	1.7e-29	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G358050 PE=4 SV=1	[more]
A0A1S3CMK4	1.7e-29	100.00	protein DSS1 HOMOLOG ON CHROMOSOME V-like OS=Cucumis melo OX=3656 GN=LOC10350262...	[more]
A0A6J1KGK6	7.1e-28	94.44	protein DELETION OF SUV3 SUPPRESSOR 1(I)-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1DJN7	3.5e-27	91.67	protein DSS1 HOMOLOG ON CHROMOSOME V-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1KMT1	6.0e-27	93.06	protein DSS1 HOMOLOG ON CHROMOSOME V-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

BLAST of IVF0008708.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144232.1	8.36e-40	100.00	protein DSS1 HOMOLOG ON CHROMOSOME V [Cucumis sativus] >XP_008464856.1 PREDICTED...	[more]
XP_023546762.1	8.06e-38	95.83	protein DSS1 HOMOLOG ON CHROMOSOME V-like isoform X2 [Cucurbita pepo subsp. pepo...	[more]
XP_022999790.1	1.15e-37	94.44	protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita maxima]	[more]
XP_038884052.1	1.82e-37	94.74	protein DSS1 HOMOLOG ON CHROMOSOME V-like [Benincasa hispida]	[more]
KAG6599102.1	6.64e-37	94.44	Protein DSS1-like ON CHROMOSOME V, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of IVF0008708.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45010.1	4.4e-22	76.71	DSS1 homolog on chromosome V	[more]
AT1G64750.1	1.3e-21	74.32	deletion of SUV3 suppressor 1(I)	[more]
AT1G64750.2	1.3e-21	74.32	deletion of SUV3 suppressor 1(I)	[more]
AT1G64750.3	1.4e-15	47.83	deletion of SUV3 suppressor 1(I)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007834	DSS1/SEM1	SMART	SM01385	DSS1_SEM1_2	coord: 9..67 e-value: 1.1E-19 score: 81.4
IPR007834	DSS1/SEM1	PFAM	PF05160	DSS1_SEM1	coord: 10..66 e-value: 6.4E-17 score: 61.4
IPR007834	DSS1/SEM1	PANTHER	PTHR16771	26 PROTEASOME COMPLEX SUBUNIT DSS1	coord: 1..72
None	No IPR available	PANTHER	PTHR16771:SF8	OS01G0316800 PROTEIN	coord: 1..72

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0008708	IVF0008708	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0008708.2-five_prime_utr	IVF0008708.2-five_prime_utr-chr03:21204325..21204501	five_prime_UTR
IVF0008708.2-five_prime_utr	IVF0008708.2-five_prime_utr-chr03:21206242..21206276	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0008708.2-exon	IVF0008708.2-exon-chr03:21204325..21204501	exon
IVF0008708.2-exon	IVF0008708.2-exon-chr03:21206242..21206367	exon
IVF0008708.2-exon	IVF0008708.2-exon-chr03:21207805..21208241	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0008708.2-cds	IVF0008708.2-cds-chr03:21206277..21206367	CDS
IVF0008708.2-cds	IVF0008708.2-cds-chr03:21207805..21207932	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0008708.2-three_prime_utr	IVF0008708.2-three_prime_utr-chr03:21207933..21208241	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0008708.2	IVF0008708.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0043248	proteasome assembly
biological_process	GO:0000724	double-strand break repair via homologous recombination
cellular_component	GO:0008541	proteasome regulatory particle, lid subcomplex