IVF0006361.2 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0006361.2
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag-pol polyprotein
Location	chr10: 22114013 .. 22114270 (-)
Sequence length	258
RNA-Seq Expression	IVF0006361.2
Synteny	IVF0006361.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTTAGGCATGAAGGAAGCTCGACTCCACGACTTCCAGTTTTGAATGGATCGAATTATGCATTTTGGAAAGCTAGGATGATTGCCTTCTTAAAATCAATTGACAACAAGTCTTGGAAGACTATTATTACTAGGTATGAACATCCTATTGTGAAAGATGTTGATGGTAAGGTTACTCAAAAGCCAGAAATCTCTTGGTCAAATACAGAGGGTGAAGCCTCTCTTGAAAATTCTCGTGTTGAAATGGAATTTTAA

mRNA sequence

ATGGAACTTAGGCATGAAGGAAGCTCGACTCCACGACTTCCAGTTTTGAATGGATCGAATTATGCATTTTGGAAAGCTAGGATGATTGCCTTCTTAAAATCAATTGACAACAAGTCTTGGAAGACTATTATTACTAGGTATGAACATCCTATTGTGAAAGATGTTGATGGTAAGGTTACTCAAAAGCCAGAAATCTCTTGGTCAAATACAGAGGGTGAAGCCTCTCTTGAAAATTCTCGTGTTGAAATGGAATTTTAA

Coding sequence (CDS)

ATGGAACTTAGGCATGAAGGAAGCTCGACTCCACGACTTCCAGTTTTGAATGGATCGAATTATGCATTTTGGAAAGCTAGGATGATTGCCTTCTTAAAATCAATTGACAACAAGTCTTGGAAGACTATTATTACTAGGTATGAACATCCTATTGTGAAAGATGTTGATGGTAAGGTTACTCAAAAGCCAGAAATCTCTTGGTCAAATACAGAGGGTGAAGCCTCTCTTGAAAATTCTCGTGTTGAAATGGAATTTTAA

Protein sequence

MELRHEGSSTPRLPVLNGSNYAFWKARMIAFLKSIDNKSWKTIITRYEHPIVKDVDGKVTQKPEISWSNTEGEASLENSRVEMEF

Homology

[Close]

BLAST of IVF0006361.2 vs. ExPASy TrEMBL
Match: A0A5D3DD91 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00460 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.1e-18
Identity = 49/76 (64.47%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 5   HEGSSTPRLPVLNGSNYAFWKARMIAFLKSIDNKSWKTIITRYEHPIVKDVDGKVTQKPE 64
           HEG+ST RL +L+G NYA WKARMI FLKSID+K WK +I  +EH   KD   KVT KP+
Sbjct: 43  HEGTSTTRLTILDGVNYACWKARMIVFLKSIDSKCWKVVIIGWEHLSTKDAASKVTLKPK 102

Query: 65  ISWSNTEGEASLENSR 81
           ISWS  E EASL NSR
Sbjct: 103 ISWSKEEDEASLGNSR 118

[Close]

BLAST of IVF0006361.2 vs. ExPASy TrEMBL
Match: A0A5A7V2Z3 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold386G00860 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.1e-18
Identity = 49/76 (64.47%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 5   HEGSSTPRLPVLNGSNYAFWKARMIAFLKSIDNKSWKTIITRYEHPIVKDVDGKVTQKPE 64
           HEG+ST RL +L+G NYA WKARMI FLKSID+K WK +I  +EH   KD   KVT KP+
Sbjct: 48  HEGTSTTRLTILDGVNYACWKARMIVFLKSIDSKCWKVVIIGWEHLSTKDAASKVTLKPK 107

Query: 65  ISWSNTEGEASLENSR 81
           ISWS  E EASL NSR
Sbjct: 108 ISWSKEEDEASLGNSR 123

[Close]

BLAST of IVF0006361.2 vs. ExPASy TrEMBL
Match: A0A5A7TXB8 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001800 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.0e-18
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 6   EGSSTPRLPVLNGSNYAFWKARMIAFLKSIDNKSWKTIITRYEHPIVKDVDGKVTQKPEI 65
           EG+ST R  +L+ +NY +WK +MI+F KSID+K WK +ITR+EHP  KDV GKVT KPEI
Sbjct: 41  EGTSTSRPTILDVANYTYWKVKMISFQKSIDSKFWKVVITRWEHPSTKDVVGKVTLKPEI 100

Query: 66  SWSNTEGEASLENSR 81
           SWS  E E SL NS+
Sbjct: 101 SWSKEEDEESLRNSQ 115

[Close]

BLAST of IVF0006361.2 vs. ExPASy TrEMBL
Match: A0A5D3D4I7 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00050 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.7e-17
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MELRHEGSSTPRLPVLNGSNYAFWKARMIAFLKSIDNKSWKTIITRYEHPIVKDVDGKVT 60
          ME   EGSST R P+ +G N+A+ KARMI FLKSID+K+WK ++T +EH  + D +GK++
Sbjct: 16 MESVREGSSTTRQPLFDGLNHAYSKARMITFLKSIDSKTWKVVVTGWEHLTMIDAEGKIS 75

Query: 61 QKPEISWSNTEGEASLENSRV 82
           KPEIS SN E EASL NSRV
Sbjct: 76 HKPEISRSNDEDEASLGNSRV 96

[Close]

BLAST of IVF0006361.2 vs. ExPASy TrEMBL
Match: A0A5D3BKV1 (Receptor-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00170 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.6e-17
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 1  MELRHEGSSTPRLPVLNGSNYAFWKARMIAFLKSIDNKSWKTIITRYEHPIVKDVDGKVT 60
          M+  HEG+ST RLP+L+G NY +WKARMIAFLKS+D+K WK ++T +E    KD  GK+ 
Sbjct: 1  MDSMHEGTSTTRLPMLDGVNYGYWKARMIAFLKSVDSKCWKAVLTEWEPSCTKDDVGKIM 60

Query: 61 QKPEISWSNTEGEASLENS 80
           K EI+W+  E E SL NS
Sbjct: 61 LKLEITWTKEEDEKSLGNS 79

[Close]

BLAST of IVF0006361.2 vs. NCBI nr
Match: TYK21554.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (249), Expect = 6.22e-24
Identity = 49/77 (63.64%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 5   HEGSSTPRLPVLNGSNYAFWKARMIAFLKSIDNKSWKTIITRYEHPIVKDVDGKVTQKPE 64
           HEG+ST RL +L+G NYA WKARMI FLKSID+K WK +I  +EH   KD   KVT KP+
Sbjct: 43  HEGTSTTRLTILDGVNYACWKARMIVFLKSIDSKCWKVVIIGWEHLSTKDAASKVTLKPK 102

Query: 65  ISWSNTEGEASLENSRV 81
           ISWS  E EASL NSR 
Sbjct: 103 ISWSKEEDEASLGNSRA 119

[Close]

BLAST of IVF0006361.2 vs. NCBI nr
Match: KAA0060245.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (249), Expect = 6.94e-24
Identity = 49/77 (63.64%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 5   HEGSSTPRLPVLNGSNYAFWKARMIAFLKSIDNKSWKTIITRYEHPIVKDVDGKVTQKPE 64
           HEG+ST RL +L+G NYA WKARMI FLKSID+K WK +I  +EH   KD   KVT KP+
Sbjct: 48  HEGTSTTRLTILDGVNYACWKARMIVFLKSIDSKCWKVVIIGWEHLSTKDAASKVTLKPK 107

Query: 65  ISWSNTEGEASLENSRV 81
           ISWS  E EASL NSR 
Sbjct: 108 ISWSKEEDEASLGNSRA 124

[Close]

BLAST of IVF0006361.2 vs. NCBI nr
Match: TYJ99644.1 (Receptor-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 2.54e-23
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 1  MELRHEGSSTPRLPVLNGSNYAFWKARMIAFLKSIDNKSWKTIITRYEHPIVKDVDGKVT 60
          M+  HEG+ST RLP+L+G NY +WKARMIAFLKS+D+K WK ++T +E    KD  GK+ 
Sbjct: 1  MDSMHEGTSTTRLPMLDGVNYGYWKARMIAFLKSVDSKCWKAVLTEWEPSCTKDDVGKIM 60

Query: 61 QKPEISWSNTEGEASLENS 79
           K EI+W+  E E SL NS
Sbjct: 61 LKLEITWTKEEDEKSLGNS 79

[Close]

BLAST of IVF0006361.2 vs. NCBI nr
Match: KAA0046626.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 8.95e-23
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 6   EGSSTPRLPVLNGSNYAFWKARMIAFLKSIDNKSWKTIITRYEHPIVKDVDGKVTQKPEI 65
           EG+ST R  +L+ +NY +WK +MI+F KSID+K WK +ITR+EHP  KDV GKVT KPEI
Sbjct: 41  EGTSTSRPTILDVANYTYWKVKMISFQKSIDSKFWKVVITRWEHPSTKDVVGKVTLKPEI 100

Query: 66  SWSNTEGEASLENSRV 81
           SWS  E E SL NS+ 
Sbjct: 101 SWSKEEDEESLRNSQA 116

[Close]

BLAST of IVF0006361.2 vs. NCBI nr
Match: KAA0054815.1 (Receptor-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 2.08e-22
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 1  MELRHEGSSTPRLPVLNGSNYAFWKARMIAFLKSIDNKSWKTIITRYEHPIVKDVDGKVT 60
          M+  HEG+ST RLP+L+G NY +WKARMIAFLK +D+K WK ++T +E    KD  GK+ 
Sbjct: 1  MDSMHEGTSTTRLPMLDGVNYGYWKARMIAFLKLVDSKCWKAVLTEWEPSCTKDDVGKIM 60

Query: 61 QKPEISWSNTEGEASLENS 79
           K EI+W+  E E SL NS
Sbjct: 61 LKLEITWTKEEDEKSLGNS 79

The following BLAST results are available for this feature:

BLAST of IVF0006361.2 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0006361.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DD91	2.1e-18	64.47	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G...	[more]
A0A5A7V2Z3	2.1e-18	64.47	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold386G...	[more]
A0A5A7TXB8	6.0e-18	61.33	Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A5D3D4I7	1.7e-17	59.26	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G...	[more]
A0A5D3BKV1	6.6e-17	55.70	Receptor-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of IVF0006361.2 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21554.1	6.22e-24	63.64	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0060245.1	6.94e-24	63.64	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYJ99644.1	2.54e-23	55.70	Receptor-like protein 12 [Cucumis melo var. makuwa]	[more]
KAA0046626.1	8.95e-23	60.53	gag-proteinase polyprotein [Cucumis melo var. makuwa]	[more]
KAA0054815.1	2.08e-22	54.43	Receptor-like protein 12 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0006361.2 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0006361	IVF0006361	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0006361.2-exon	IVF0006361.2-exon-chr10:22114013..22114270	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0006361.2-cds	IVF0006361.2-cds-chr10:22114013..22114270	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0006361.2	IVF0006361.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane