Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAAAGATTAAACAAAGTAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATCACAGAAAAGAAAAAAGGGAAAGAAGAAAGACGAAATCGCAGGGGAAGAACGAAGAAGACGAAATAGAGGAGGAAGACGAATCGCGAGGAAGAAAGAAAGATGGAAGGGCAAATCTGGAATATTTAAAAAATGGCTAACTTTATGA mRNA sequence ATGGAAAGATTAAACAAAGTAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATCACAGAAAAGAAAAAAGGGAAAGAAGAAAGACGAAATCGCAGGGGAAGAACGAAGAAGACGAAATAGAGGAGGAAGACGAATCGCGAGGAAGAAAGAAAGATGGAAGGGCAAATCTGGAATATTTAAAAAATGGCTAACTTTATGA Coding sequence (CDS) ATGGAAAGATTAAACAAAGTAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATCACAGAAAAGAAAAAAGGGAAAGAAGAAAGACGAAATCGCAGGGGAAGAACGAAGAAGACGAAATAGAGGAGGAAGACGAATCGCGAGGAAGAAAGAAAGATGGAAGGGCAAATCTGGAATATTTAAAAAATGGCTAACTTTATGA Protein sequence MERLNKVNKELKNKKDDGKKSQKRKKGKKKDEIAGEERRRRNRGGRRIARKKERWKGKSGIFKKWLTL
Homology
BLAST of IVF0005377.1 vs. NCBI nr
Match: KAA0057036.1 (hypothetical protein E6C27_scaffold96G002220 [Cucumis melo var. makuwa]) HSP 1 Score: 45.4 bits (106), Expect = 9.65e-04 Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 0 Query: 1 MERLNKVNKELKNKKDDGKKSQKRKKGKKKDEIAGEERRRRNRGGRRIARKKERWKGKS 59 MERLN +NKELKNKKD + +K K+ KKK+EI GE+ RGGR KERWKGKS Sbjct: 1 MERLNDINKELKNKKDMERNRRKEKQKKKKEEITGEDE---IRGGR-----KERWKGKS 51
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAA0057036.1 | 9.65e-04 | 59.32 | hypothetical protein E6C27_scaffold96G002220 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 1..24 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..56 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..17 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 28..42 |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Type |
IVF0005377 | IVF0005377 | gene |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
IVF0005377.1-exon | IVF0005377.1-exon-chr05:11341567..11341773 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
IVF0005377.1-cds | IVF0005377.1-cds-chr05:11341567..11341773 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
IVF0005377.1 | IVF0005377.1-protein | polypeptide |
|