IVF0005377 (gene) Melon (IVF77) v1

Overview


Name	IVF0005377
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr05: 11341567 .. 11341773 (-)
RNA-Seq Expression	IVF0005377
Synteny	IVF0005377

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGATTAAACAAAGTAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATCACAGAAAAGAAAAAAGGGAAAGAAGAAAGACGAAATCGCAGGGGAAGAACGAAGAAGACGAAATAGAGGAGGAAGACGAATCGCGAGGAAGAAAGAAAGATGGAAGGGCAAATCTGGAATATTTAAAAAATGGCTAACTTTATGA

mRNA sequence

ATGGAAAGATTAAACAAAGTAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATCACAGAAAAGAAAAAAGGGAAAGAAGAAAGACGAAATCGCAGGGGAAGAACGAAGAAGACGAAATAGAGGAGGAAGACGAATCGCGAGGAAGAAAGAAAGATGGAAGGGCAAATCTGGAATATTTAAAAAATGGCTAACTTTATGA

Coding sequence (CDS)

ATGGAAAGATTAAACAAAGTAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATCACAGAAAAGAAAAAAGGGAAAGAAGAAAGACGAAATCGCAGGGGAAGAACGAAGAAGACGAAATAGAGGAGGAAGACGAATCGCGAGGAAGAAAGAAAGATGGAAGGGCAAATCTGGAATATTTAAAAAATGGCTAACTTTATGA

Protein sequence

MERLNKVNKELKNKKDDGKKSQKRKKGKKKDEIAGEERRRRNRGGRRIARKKERWKGKSGIFKKWLTL

Homology

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BLAST of IVF0005377 vs. NCBI nr
Match: KAA0057036.1 (hypothetical protein E6C27_scaffold96G002220 [Cucumis melo var. makuwa])

HSP 1 Score: 45.4 bits (106), Expect = 9.65e-04
Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 1  MERLNKVNKELKNKKDDGKKSQKRKKGKKKDEIAGEERRRRNRGGRRIARKKERWKGKS 59
          MERLN +NKELKNKKD  +  +K K+ KKK+EI GE+     RGGR     KERWKGKS
Sbjct: 1  MERLNDINKELKNKKDMERNRRKEKQKKKKEEITGEDE---IRGGR-----KERWKGKS 51

The following BLAST results are available for this feature:

BLAST of IVF0005377 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0005377 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0005377 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057036.1	9.65e-04	59.32	hypothetical protein E6C27_scaffold96G002220 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0005377 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005377.1	IVF0005377.1	mRNA