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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGAAACCCCAACCTATACCGATTCATCATAATTTCTCTAATAAGACTATACCCAGCCCTAATTTCAGTAAATGTTTCAAACATCCAGCATCGTGCGTGGGTACTAACCTCCCGCCTGCCCTCCGTAGTCAGCTCTCGTACGACTGCTGGAGTTTTTCCCCTCTCCTCTTCAAATTCGTAAGATTGAAGTTCTATGATCTTTCAATTTTGCATTTCTTCAAGTTCATGCCTTGTGCCAGTTTGATTTTGGATTGATGTTGAGAATGATTGATATTGAGTAGTGTCTTGAGAGTTTCCAGTTATGTTTTGTTTGTGGTTAACTGTAAATAGTGACCGACGGTGAGTGGCGACTGGCGAGGCAAAGGAGATCGAATAGAAATAGATGGAGACGGCCGGCCTGCGTGGCGGTGGAGATTCAAGAGATGGAAGACGAGGAGACGAAAGATGGAAAAAGAGGAGACAGAAAGACGAAATAG mRNA sequence ATGAAACCCCAACCTATACCGATTCATCATAATTTCTCTAATAAGACTATACCCAGCCCTAATTTCAGTAAATGTTTCAAACATCCAGCATCGTGCGTGGGTACTAACCTCCCGCCTGCCCTCCTGACCGACGGTGAGTGGCGACTGGCGAGGCAAAGGAGATCGAATAGAAATAGATGGAGACGGCCGGCCTGCGTGGCGGTGGAGATTCAAGAGATGGAAGACGAGGAGACGAAAGATGGAAAAAGAGGAGACAGAAAGACGAAATAG Coding sequence (CDS) ATGAAACCCCAACCTATACCGATTCATCATAATTTCTCTAATAAGACTATACCCAGCCCTAATTTCAGTAAATGTTTCAAACATCCAGCATCGTGCGTGGGTACTAACCTCCCGCCTGCCCTCCTGACCGACGGTGAGTGGCGACTGGCGAGGCAAAGGAGATCGAATAGAAATAGATGGAGACGGCCGGCCTGCGTGGCGGTGGAGATTCAAGAGATGGAAGACGAGGAGACGAAAGATGGAAAAAGAGGAGACAGAAAGACGAAATAG Protein sequence MKPQPIPIHHNFSNKTIPSPNFSKCFKHPASCVGTNLPPALLTDGEWRLARQRRSNRNRWRRPACVAVEIQEMEDEETKDGKRGDRKTK
Homology
BLAST of IVF0004623.1 vs. ExPASy TrEMBL
Match: A0A0A0L3Y6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539620 PE=4 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12 Identity = 49/93 (52.69%), Postives = 56/93 (60.22%), Query Frame = 0
Query: 1 MKPQPIPIHHNFSNKTIPSPNFSKCFKHPASCVGTNLPPALLT--------DGEWRLARQ 60
MKPQ IPIHHNF NKTIPSPNFSKCFK PASCVGTNL A + D L
Sbjct: 1 MKPQRIPIHHNFLNKTIPSPNFSKCFKLPASCVGTNLSLASVVSSRTPADFDFGLMLGSV 60
Query: 61 RRSNRNRWRRPACVAVEIQEMEDEETKDGKRGD 86
R R V++EI+EME+E TK+ R +
Sbjct: 61 LRDGRRGDDDIGRVSLEIKEMEEEGTKEEMRDE 93
BLAST of IVF0004623.1 vs. NCBI nr
Match: KAE8649746.1 (hypothetical protein Csa_023756 [Cucumis sativus]) HSP 1 Score: 74.7 bits (182), Expect = 1.87e-15 Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0
Query: 1 MKPQPIPIHHNFSNKTIPSPNFSKCFKHPASCVGTNL 37
MKPQ IPIHHNF NKTIPSPNFSKCFK PASCVGTNL
Sbjct: 1 MKPQRIPIHHNFLNKTIPSPNFSKCFKLPASCVGTNL 37
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L3Y6 | 1.4e-12 | 52.69 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539620 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAE8649746.1 | 1.87e-15 | 91.89 | hypothetical protein Csa_023756 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| IVF0004623 | IVF0004623 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| IVF0004623.1-exon | IVF0004623.1-exon-chr12:9767387..9767532 | exon |
| IVF0004623.1-exon | IVF0004623.1-exon-chr12:9767739..9767862 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| IVF0004623.1-cds | IVF0004623.1-cds-chr12:9767387..9767532 | CDS |
| IVF0004623.1-cds | IVF0004623.1-cds-chr12:9767739..9767862 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| IVF0004623.1 | IVF0004623.1-protein | polypeptide |
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