IVF0004623 (gene) Melon (IVF77) v1

Overview
NameIVF0004623
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr12: 9767387 .. 9767862 (-)
RNA-Seq ExpressionIVF0004623
SyntenyIVF0004623
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACCCCAACCTATACCGATTCATCATAATTTCTCTAATAAGACTATACCCAGCCCTAATTTCAGTAAATGTTTCAAACATCCAGCATCGTGCGTGGGTACTAACCTCCCGCCTGCCCTCCGTAGTCAGCTCTCGTACGACTGCTGGAGTTTTTCCCCTCTCCTCTTCAAATTCGTAAGATTGAAGTTCTATGATCTTTCAATTTTGCATTTCTTCAAGTTCATGCCTTGTGCCAGTTTGATTTTGGATTGATGTTGAGAATGATTGATATTGAGTAGTGTCTTGAGAGTTTCCAGTTATGTTTTGTTTGTGGTTAACTGTAAATAGTGACCGACGGTGAGTGGCGACTGGCGAGGCAAAGGAGATCGAATAGAAATAGATGGAGACGGCCGGCCTGCGTGGCGGTGGAGATTCAAGAGATGGAAGACGAGGAGACGAAAGATGGAAAAAGAGGAGACAGAAAGACGAAATAG

mRNA sequence

ATGAAACCCCAACCTATACCGATTCATCATAATTTCTCTAATAAGACTATACCCAGCCCTAATTTCAGTAAATGTTTCAAACATCCAGCATCGTGCGTGGGTACTAACCTCCCGCCTGCCCTCCTGACCGACGGTGAGTGGCGACTGGCGAGGCAAAGGAGATCGAATAGAAATAGATGGAGACGGCCGGCCTGCGTGGCGGTGGAGATTCAAGAGATGGAAGACGAGGAGACGAAAGATGGAAAAAGAGGAGACAGAAAGACGAAATAG

Coding sequence (CDS)

ATGAAACCCCAACCTATACCGATTCATCATAATTTCTCTAATAAGACTATACCCAGCCCTAATTTCAGTAAATGTTTCAAACATCCAGCATCGTGCGTGGGTACTAACCTCCCGCCTGCCCTCCTGACCGACGGTGAGTGGCGACTGGCGAGGCAAAGGAGATCGAATAGAAATAGATGGAGACGGCCGGCCTGCGTGGCGGTGGAGATTCAAGAGATGGAAGACGAGGAGACGAAAGATGGAAAAAGAGGAGACAGAAAGACGAAATAG

Protein sequence

MKPQPIPIHHNFSNKTIPSPNFSKCFKHPASCVGTNLPPALLTDGEWRLARQRRSNRNRWRRPACVAVEIQEMEDEETKDGKRGDRKTK
Homology
[Close]
BLAST of IVF0004623 vs. ExPASy TrEMBL
Match: A0A0A0L3Y6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539620 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 49/93 (52.69%), Postives = 56/93 (60.22%), Query Frame = 0 

Query: 1  MKPQPIPIHHNFSNKTIPSPNFSKCFKHPASCVGTNLPPALLT--------DGEWRLARQ 60
          MKPQ IPIHHNF NKTIPSPNFSKCFK PASCVGTNL  A +         D    L   
Sbjct: 1  MKPQRIPIHHNFLNKTIPSPNFSKCFKLPASCVGTNLSLASVVSSRTPADFDFGLMLGSV 60

Query: 61 RRSNRNRWRRPACVAVEIQEMEDEETKDGKRGD 86
           R  R        V++EI+EME+E TK+  R +
Sbjct: 61 LRDGRRGDDDIGRVSLEIKEMEEEGTKEEMRDE 93

[Close]
BLAST of IVF0004623 vs. NCBI nr
Match: KAE8649746.1 (hypothetical protein Csa_023756 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.87e-15
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0 

Query: 1  MKPQPIPIHHNFSNKTIPSPNFSKCFKHPASCVGTNL 37
          MKPQ IPIHHNF NKTIPSPNFSKCFK PASCVGTNL
Sbjct: 1  MKPQRIPIHHNFLNKTIPSPNFSKCFKLPASCVGTNL 37

The following BLAST results are available for this feature:
BLAST of IVF0004623 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0004623 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3Y61.4e-1252.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539620 PE=4 SV=1[more]
BLAST of IVF0004623 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649746.11.87e-1591.89hypothetical protein Csa_023756 [Cucumis sativus][more]
BLAST of IVF0004623 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0004623.1IVF0004623.1mRNA