IVF0004240.1 (mRNA) Melon (IVF77) v1

Overview
NameIVF0004240.1
TypemRNA
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionapidaecins type 73-like isoform X2
Locationchr09: 2001608 .. 2002174 (-)
Sequence length249
RNA-Seq ExpressionIVF0004240.1
SyntenyIVF0004240.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAACAAAAGAATTTTATCAATTCTTCTTCTTTCATGTTTTCTCTTTCTCTTTCTCTCTCCTGGTACTCTTCTCTCTCCTATTTCTTCTGTCATATTGGATTTTTATTATTACATTCATTGCTCTTATCTCTTCTCTGTTCAAACTTTTTTTTTCCTCAAAGGATTTGGAGTAGAAACGATGGGAACTATGGAACAGGCAGCCTCACTTACTCCACATGAAAAGGTGATTATTCAAATTTTGTTGTCCTTCTACTTTCGATTTTGGTTTATTTTAATTCAAAAACTTTCATTTTGGATAATCGTTTTAATTGGTATCTCATTTTTTTACCATGTAAAAATCAAAATGAAGGTTTTGAAAGTAGAAAAATTTAAAATGAAACAGATGATTAAAAGTATACAACGCAAATGAACGTCTGAGATTTTGTATTTTTATGTTTGACAGGAAATAAGTGGAGGAAAATGGAGAGACGTGATGGTTCAATTGCGTGAAGACTATCATGGTCCGGGACCTAATAAACCAAAGGCTAGCTATAATATGGCGGCTCCTTCTGCAACACCTTAA

mRNA sequence

ATGGATAACAAAAGAATTTTATCAATTCTTCTTCTTTCATGTTTTCTCTTTCTCTTTCTCTCTCCTGGATTTGGAGTAGAAACGATGGGAACTATGGAACAGGCAGCCTCACTTACTCCACATGAAAAGGAAATAAGTGGAGGAAAATGGAGAGACGTGATGGTTCAATTGCGTGAAGACTATCATGGTCCGGGACCTAATAAACCAAAGGCTAGCTATAATATGGCGGCTCCTTCTGCAACACCTTAA

Coding sequence (CDS)

ATGGATAACAAAAGAATTTTATCAATTCTTCTTCTTTCATGTTTTCTCTTTCTCTTTCTCTCTCCTGGATTTGGAGTAGAAACGATGGGAACTATGGAACAGGCAGCCTCACTTACTCCACATGAAAAGGAAATAAGTGGAGGAAAATGGAGAGACGTGATGGTTCAATTGCGTGAAGACTATCATGGTCCGGGACCTAATAAACCAAAGGCTAGCTATAATATGGCGGCTCCTTCTGCAACACCTTAA

Protein sequence

MDNKRILSILLLSCFLFLFLSPGFGVETMGTMEQAASLTPHEKEISGGKWRDVMVQLREDYHGPGPNKPKASYNMAAPSATP
Homology
BLAST of IVF0004240.1 vs. ExPASy TrEMBL
Match: A0A0A0KU89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636610 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.0e-26
Identity = 67/84 (79.76%), Postives = 75/84 (89.29%), Query Frame = 0

Query: 1  MDNKRILSILLLSCFLFLFLSPGFGVETMGTMEQAASLTPHEKEISGGKWRDVMV-QLRE 60
          M+++RIL ILL+SCFLFLFLSPGFGVETM TMEQAASLTPHEKE+SGGKWRDVMV QL E
Sbjct: 1  MEDQRILPILLVSCFLFLFLSPGFGVETMRTMEQAASLTPHEKEMSGGKWRDVMVDQLLE 60

Query: 61 DYHGPGPNKPKASYNMAAP-SATP 83
          DYHGPGPNKP+   ++ AP SATP
Sbjct: 61 DYHGPGPNKPR---SITAPNSATP 81

BLAST of IVF0004240.1 vs. ExPASy TrEMBL
Match: A0A5A7TDZ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002810 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.6e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 29 MGTMEQAASLTPHEKEISGGKWRDVMVQLREDYHGPGPNKPKASYNMAAPSATP 83
          MGTMEQAASLTPHEKEISGGKWRDVMVQLREDYHGPGPNKPKASYNMAAPSATP
Sbjct: 1  MGTMEQAASLTPHEKEISGGKWRDVMVQLREDYHGPGPNKPKASYNMAAPSATP 54

BLAST of IVF0004240.1 vs. ExPASy TrEMBL
Match: A0A6J1BVK3 (apidaecins type 73-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006109 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.1e-04
Identity = 31/82 (37.80%), Postives = 44/82 (53.66%), Query Frame = 0

Query: 1  MDNKRILSILLLSCFLFLFLSPGFGVETMGTMEQAASLTPHEKEISGGKWRDVMVQLRED 60
          MD+  I S+LL+S  L LF S GFGV+ MG+ E   S+TP ++ I   +     V    +
Sbjct: 1  MDSLTIFSLLLISSLLLLFFSHGFGVDVMGSGEHPESMTPLKESIQKSR----KVNEVAN 60

Query: 61 YHGPGPNKPKASYNMAAPSATP 83
          YH P PN P   +     +A+P
Sbjct: 61 YHDPAPNHPTMFHPTKILNASP 78

BLAST of IVF0004240.1 vs. NCBI nr
Match: KGN52469.1 (hypothetical protein Csa_008670 [Cucumis sativus])

HSP 1 Score: 127 bits (319), Expect = 2.62e-36
Identity = 67/84 (79.76%), Postives = 75/84 (89.29%), Query Frame = 0

Query: 1  MDNKRILSILLLSCFLFLFLSPGFGVETMGTMEQAASLTPHEKEISGGKWRDVMV-QLRE 60
          M+++RIL ILL+SCFLFLFLSPGFGVETM TMEQAASLTPHEKE+SGGKWRDVMV QL E
Sbjct: 1  MEDQRILPILLVSCFLFLFLSPGFGVETMRTMEQAASLTPHEKEMSGGKWRDVMVDQLLE 60

Query: 61 DYHGPGPNKPKASYNMAAP-SATP 82
          DYHGPGPNKP++   + AP SATP
Sbjct: 61 DYHGPGPNKPRS---ITAPNSATP 81

BLAST of IVF0004240.1 vs. NCBI nr
Match: XP_031741770.1 (probable calcium-binding protein CML47 [Cucumis sativus])

HSP 1 Score: 128 bits (321), Expect = 6.15e-34
Identity = 65/83 (78.31%), Postives = 74/83 (89.16%), Query Frame = 0

Query: 1  MDNKRILSILLLSCFLFLFLSPGFGVETMGTMEQAASLTPHEKEISGGKWRDVMV-QLRE 60
          M+++RIL ILL+SCFLFLFLSPGFGVETM TMEQAASLTPHEKE+SGGKWRDVMV QL E
Sbjct: 1  MEDQRILPILLVSCFLFLFLSPGFGVETMRTMEQAASLTPHEKEMSGGKWRDVMVDQLLE 60

Query: 61 DYHGPGPNKPKA--SYNMAAPSA 80
          DYHGPGPNKP++  + N A PS+
Sbjct: 61 DYHGPGPNKPRSITAPNSATPSS 83

BLAST of IVF0004240.1 vs. NCBI nr
Match: KAA0039469.1 (hypothetical protein E6C27_scaffold64G002790 [Cucumis melo var. makuwa] >TYK00659.1 hypothetical protein E5676_scaffold169G002810 [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (292), Expect = 1.66e-32
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 29 MGTMEQAASLTPHEKEISGGKWRDVMVQLREDYHGPGPNKPKASYNMAAPSATP 82
          MGTMEQAASLTPHEKEISGGKWRDVMVQLREDYHGPGPNKPKASYNMAAPSATP
Sbjct: 1  MGTMEQAASLTPHEKEISGGKWRDVMVQLREDYHGPGPNKPKASYNMAAPSATP 54

BLAST of IVF0004240.1 vs. NCBI nr
Match: XP_022133550.1 (apidaecins type 73-like isoform X2 [Momordica charantia])

HSP 1 Score: 52.0 bits (123), Expect = 2.05e-05
Identity = 31/82 (37.80%), Postives = 44/82 (53.66%), Query Frame = 0

Query: 1  MDNKRILSILLLSCFLFLFLSPGFGVETMGTMEQAASLTPHEKEISGGKWRDVMVQLRED 60
          MD+  I S+LL+S  L LF S GFGV+ MG+ E   S+TP ++ I   +     V    +
Sbjct: 1  MDSLTIFSLLLISSLLLLFFSHGFGVDVMGSGEHPESMTPLKESIQKSR----KVNEVAN 60

Query: 61 YHGPGPNKPKASYNMAAPSATP 82
          YH P PN P   +     +A+P
Sbjct: 61 YHDPAPNHPTMFHPTKILNASP 78

BLAST of IVF0004240.1 vs. NCBI nr
Match: XP_022133549.1 (apidaecins type 14-like isoform X1 [Momordica charantia])

HSP 1 Score: 50.4 bits (119), Expect = 7.32e-05
Identity = 34/82 (41.46%), Postives = 46/82 (56.10%), Query Frame = 0

Query: 1  MDNKRILSILLLSCFLFLFLSPGFGVETMGTMEQAASLTPHEKEISGGKWRDVMVQLRED 60
          MD+  I S+LL+S  L LF S GFGV+ MG+ E   S+TP ++E S  K R V      +
Sbjct: 1  MDSLTIFSLLLISSLLLLFFSHGFGVDVMGSGEHPESMTPLKQE-SIQKSRKVNEVA--N 60

Query: 61 YHGPGPNKPKASYNMAAPSATP 82
          YH P PN P   +     +A+P
Sbjct: 61 YHDPAPNHPTMFHPTKILNASP 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KU892.0e-2679.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636610 PE=4 SV=1[more]
A0A5A7TDZ04.6e-23100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1BVK38.1e-0437.80apidaecins type 73-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC11100610... [more]
Match NameE-valueIdentityDescription
KGN52469.12.62e-3679.76hypothetical protein Csa_008670 [Cucumis sativus][more]
XP_031741770.16.15e-3478.31probable calcium-binding protein CML47 [Cucumis sativus][more]
KAA0039469.11.66e-32100.00hypothetical protein E6C27_scaffold64G002790 [Cucumis melo var. makuwa] >TYK0065... [more]
XP_022133550.12.05e-0537.80apidaecins type 73-like isoform X2 [Momordica charantia][more]
XP_022133549.17.32e-0541.46apidaecins type 14-like isoform X1 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..82

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
IVF0004240IVF0004240gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0004240.1-exonIVF0004240.1-exon-chr09:2001608..2001727exon
IVF0004240.1-exonIVF0004240.1-exon-chr09:2001947..2002008exon
IVF0004240.1-exonIVF0004240.1-exon-chr09:2002108..2002174exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0004240.1-cdsIVF0004240.1-cds-chr09:2001608..2001727CDS
IVF0004240.1-cdsIVF0004240.1-cds-chr09:2001947..2002008CDS
IVF0004240.1-cdsIVF0004240.1-cds-chr09:2002108..2002174CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
IVF0004240.1IVF0004240.1-proteinpolypeptide