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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGACTGATGAAGGAGGCCTAATGATGTTTCGCTACGATACGCTGAAGACGATACTAAAAAAGACTATGAAGTTTGGCAGGATGGGCAAGAAGACGATTCCTTAAGTGGCGATGAGCAAGGAAACATCTGGAACAACAATGATTGTATTCGAATGGGTCAAGCTTACAGAAGGCAAGAAACACGAACACAAATTCATCATGACTACAAGATGA mRNA sequence ATGACTGATGAAGGAGGCCTAATGATGTTTCGCTACGATACGCTGAAGACGATACTAAAAAAGACTATGAACAAGGAAACATCTGGAACAACAATGATTGTATTCGAATGGGTCAAGCTTACAGAAGGCAAGAAACACGAACACAAATTCATCATGACTACAAGATGA Coding sequence (CDS) ATGACTGATGAAGGAGGCCTAATGATGTTTCGCTACGATACGCTGAAGACGATACTAAAAAAGACTATGAACAAGGAAACATCTGGAACAACAATGATTGTATTCGAATGGGTCAAGCTTACAGAAGGCAAGAAACACGAACACAAATTCATCATGACTACAAGATGA Protein sequence MTDEGGLMMFRYDTLKTILKKTMNKETSGTTMIVFEWVKLTEGKKHEHKFIMTTR
Homology
BLAST of IVF0003786.1 vs. ExPASy TrEMBL
Match: A0A5D3DJB8 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00510 PE=4 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 3.9e-10 Identity = 38/65 (58.46%), Postives = 43/65 (66.15%), Query Frame = 0 Query: 1 MTDEGGLMMFRYDTLKTILKKT---------------MNKETSGTTMIVFEWVKLTEGKK 51 MTD+GGLMMF D KTILKKT M+KETSGTTM++FEWVKL EGKK Sbjct: 69 MTDKGGLMMFHCDNTKTILKKTMKFGRMGKKTIHEVAMSKETSGTTMMIFEWVKLMEGKK 128
BLAST of IVF0003786.1 vs. NCBI nr
Match: KAA0040480.1 (hypothetical protein E6C27_scaffold262G00150 [Cucumis melo var. makuwa] >TYK23480.1 hypothetical protein E5676_scaffold278G00510 [Cucumis melo var. makuwa]) HSP 1 Score: 74.7 bits (182), Expect = 7.11e-14 Identity = 38/65 (58.46%), Postives = 43/65 (66.15%), Query Frame = 0 Query: 1 MTDEGGLMMFRYDTLKTILKKTM---------------NKETSGTTMIVFEWVKLTEGKK 50 MTD+GGLMMF D KTILKKTM +KETSGTTM++FEWVKL EGKK Sbjct: 69 MTDKGGLMMFHCDNTKTILKKTMKFGRMGKKTIHEVAMSKETSGTTMMIFEWVKLMEGKK 128
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DJB8 | 3.9e-10 | 58.46 | CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... | [more] |
Match Name | E-value | Identity | Description | |
KAA0040480.1 | 7.11e-14 | 58.46 | hypothetical protein E6C27_scaffold262G00150 [Cucumis melo var. makuwa] >TYK2348... | [more] |
Match Name | E-value | Identity | Description | |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Type |
IVF0003786 | IVF0003786 | gene |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
IVF0003786.1-exon | IVF0003786.1-exon-chr03:19364253..19364349 | exon |
IVF0003786.1-exon | IVF0003786.1-exon-chr03:19364395..19364465 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
IVF0003786.1-cds | IVF0003786.1-cds-chr03:19364253..19364349 | CDS |
IVF0003786.1-cds | IVF0003786.1-cds-chr03:19364395..19364465 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
IVF0003786.1 | IVF0003786.1-protein | polypeptide |
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