IVF0003786 (gene) Melon (IVF77) v1

Overview
NameIVF0003786
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCCHC-type domain-containing protein
Locationchr03: 19364253 .. 19364465 (-)
RNA-Seq ExpressionIVF0003786
SyntenyIVF0003786
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGATGAAGGAGGCCTAATGATGTTTCGCTACGATACGCTGAAGACGATACTAAAAAAGACTATGAAGTTTGGCAGGATGGGCAAGAAGACGATTCCTTAAGTGGCGATGAGCAAGGAAACATCTGGAACAACAATGATTGTATTCGAATGGGTCAAGCTTACAGAAGGCAAGAAACACGAACACAAATTCATCATGACTACAAGATGA

mRNA sequence

ATGACTGATGAAGGAGGCCTAATGATGTTTCGCTACGATACGCTGAAGACGATACTAAAAAAGACTATGAACAAGGAAACATCTGGAACAACAATGATTGTATTCGAATGGGTCAAGCTTACAGAAGGCAAGAAACACGAACACAAATTCATCATGACTACAAGATGA

Coding sequence (CDS)

ATGACTGATGAAGGAGGCCTAATGATGTTTCGCTACGATACGCTGAAGACGATACTAAAAAAGACTATGAACAAGGAAACATCTGGAACAACAATGATTGTATTCGAATGGGTCAAGCTTACAGAAGGCAAGAAACACGAACACAAATTCATCATGACTACAAGATGA

Protein sequence

MTDEGGLMMFRYDTLKTILKKTMNKETSGTTMIVFEWVKLTEGKKHEHKFIMTTR
Homology
[Close]
BLAST of IVF0003786 vs. ExPASy TrEMBL
Match: A0A5D3DJB8 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00510 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.9e-10
Identity = 38/65 (58.46%), Postives = 43/65 (66.15%), Query Frame = 0 

Query: 1   MTDEGGLMMFRYDTLKTILKKT---------------MNKETSGTTMIVFEWVKLTEGKK 51
           MTD+GGLMMF  D  KTILKKT               M+KETSGTTM++FEWVKL EGKK
Sbjct: 69  MTDKGGLMMFHCDNTKTILKKTMKFGRMGKKTIHEVAMSKETSGTTMMIFEWVKLMEGKK 128

[Close]
BLAST of IVF0003786 vs. NCBI nr
Match: KAA0040480.1 (hypothetical protein E6C27_scaffold262G00150 [Cucumis melo var. makuwa] >TYK23480.1 hypothetical protein E5676_scaffold278G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 7.11e-14
Identity = 38/65 (58.46%), Postives = 43/65 (66.15%), Query Frame = 0 

Query: 1   MTDEGGLMMFRYDTLKTILKKTM---------------NKETSGTTMIVFEWVKLTEGKK 50
           MTD+GGLMMF  D  KTILKKTM               +KETSGTTM++FEWVKL EGKK
Sbjct: 69  MTDKGGLMMFHCDNTKTILKKTMKFGRMGKKTIHEVAMSKETSGTTMMIFEWVKLMEGKK 128

The following BLAST results are available for this feature:
BLAST of IVF0003786 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0003786 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DJB83.9e-1058.46CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
BLAST of IVF0003786 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0040480.17.11e-1458.46hypothetical protein E6C27_scaffold262G00150 [Cucumis melo var. makuwa] >TYK2348... [more]
BLAST of IVF0003786 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003786.1IVF0003786.1mRNA