IVF0003012.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0003012.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr10: 14900970 .. 14901224 (-)
Sequence length	255
RNA-Seq Expression	IVF0003012.1
Synteny	IVF0003012.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAAGGACAAAGAAATGGAATCAAATGTTGCTATCACAGAGAAAGAATTAGTGAGAGGATCATCCTCTAAGACTAGAGTTGGACCTTCACTTATGAAAAATAAGAGAAAGGGGAAGACTCCCATGAATAGTAAGGGAAAGAATGTTGCTAAAGGTAAATGTTACCACTGCAACGAGGATGGACATTGGTTAAGAAATTGCCCAAAGTACCTTGCTGAGAAGAAAGCTGAGAAGGAAGCACAAGAAAACTAG

mRNA sequence

ATGAGTAAGGACAAAGAAATGGAATCAAATGTTGCTATCACAGAGAAAGAATTAGTGAGAGGATCATCCTCTAAGACTAGAGTTGGACCTTCACTTATGAAAAATAAGAGAAAGGGGAAGACTCCCATGAATAGTAAGGGAAAGAATGTTGCTAAAGGTAAATGTTACCACTGCAACGAGGATGGACATTGGTTAAGAAATTGCCCAAAGTACCTTGCTGAGAAGAAAGCTGAGAAGGAAGCACAAGAAAACTAG

Coding sequence (CDS)

ATGAGTAAGGACAAAGAAATGGAATCAAATGTTGCTATCACAGAGAAAGAATTAGTGAGAGGATCATCCTCTAAGACTAGAGTTGGACCTTCACTTATGAAAAATAAGAGAAAGGGGAAGACTCCCATGAATAGTAAGGGAAAGAATGTTGCTAAAGGTAAATGTTACCACTGCAACGAGGATGGACATTGGTTAAGAAATTGCCCAAAGTACCTTGCTGAGAAGAAAGCTGAGAAGGAAGCACAAGAAAACTAG

Protein sequence

MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQEN

Homology

[Close]

BLAST of IVF0003012.1 vs. ExPASy TrEMBL
Match: A0A5A7TXW7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold688G00290 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 7.9e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1   MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 60
           MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE
Sbjct: 150 MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 209

Query: 61  DGHWLRNCPKYLAEKKAEKEAQEN 85
           DGHWLRNCPKYLAEKKAEKEAQEN
Sbjct: 210 DGHWLRNCPKYLAEKKAEKEAQEN 233

[Close]

BLAST of IVF0003012.1 vs. ExPASy TrEMBL
Match: A0A5D3E1U5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001090 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.5e-29
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 1   MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 60
           M K KE+E+N+A TEKELV GSSSKTRVGPS +K K KGKTP NSKGK VAKGKCYHCNE
Sbjct: 71  MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  DGHWLRNCPKYLAEKKAEKEAQ 83
           DGHWLRNCP+YLAEKKAEKEAQ
Sbjct: 131 DGHWLRNCPEYLAEKKAEKEAQ 152

[Close]

BLAST of IVF0003012.1 vs. ExPASy TrEMBL
Match: A0A5A7T0L9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00290 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 7.5e-29
Identity = 67/82 (81.71%), Postives = 72/82 (87.80%), Query Frame = 0


Query: 1   MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 60
           M K KE+E+N+A  EKELV GSSSKTRVGPS +K K KGKTP NSKGK VAKGKCYHCNE
Sbjct: 71  MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  DGHWLRNCPKYLAEKKAEKEAQ 83
           +GHWLRNCPKYLAEKKAEKEAQ
Sbjct: 131 EGHWLRNCPKYLAEKKAEKEAQ 152

[Close]

BLAST of IVF0003012.1 vs. ExPASy TrEMBL
Match: A0A5A7TUI5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00480 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 9.7e-29
Identity = 68/82 (82.93%), Postives = 72/82 (87.80%), Query Frame = 0


Query: 1   MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 60
           M K KE+E+NVA TEKELVRGSSSKTRVGPS +K KRKGK P NSKGK VAKGKCYHCNE
Sbjct: 34  MGKGKEVEANVATTEKELVRGSSSKTRVGPSQIKKKRKGKNPKNSKGKKVAKGKCYHCNE 93

Query: 61  DGHWLRNCPKYLAEKKAEKEAQ 83
           D HWL+NC KYLAEKKAEKEAQ
Sbjct: 94  DRHWLKNCLKYLAEKKAEKEAQ 115

[Close]

BLAST of IVF0003012.1 vs. ExPASy TrEMBL
Match: A0A5D3BYQ2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00100 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.7e-28
Identity = 67/84 (79.76%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1   MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 60
           M K KE+E+NV  TEKELV GSSSKTRVG   MK KRKGKTP NS+GK VAKGKCYHCNE
Sbjct: 103 MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNE 162

Query: 61  DGHWLRNCPKYLAEKKAEKEAQEN 85
           DGHWLRNCPKYL EKKA+KEAQ N
Sbjct: 163 DGHWLRNCPKYLTEKKADKEAQRN 186

[Close]

BLAST of IVF0003012.1 vs. NCBI nr
Match: KAA0046201.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14168.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (424), Expect = 2.94e-50
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1   MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 60
           MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE
Sbjct: 150 MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 209

Query: 61  DGHWLRNCPKYLAEKKAEKEAQEN 84
           DGHWLRNCPKYLAEKKAEKEAQEN
Sbjct: 210 DGHWLRNCPKYLAEKKAEKEAQEN 233

[Close]

BLAST of IVF0003012.1 vs. NCBI nr
Match: TYK29862.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (344), Expect = 6.52e-39
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 1   MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 60
           M K KE+E+N+A TEKELV GSSSKTRVGPS +K K KGKTP NSKGK VAKGKCYHCNE
Sbjct: 71  MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  DGHWLRNCPKYLAEKKAEKEAQ 82
           DGHWLRNCP+YLAEKKAEKEAQ
Sbjct: 131 DGHWLRNCPEYLAEKKAEKEAQ 152

[Close]

BLAST of IVF0003012.1 vs. NCBI nr
Match: KAA0045181.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK27371.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (337), Expect = 2.51e-38
Identity = 68/82 (82.93%), Postives = 72/82 (87.80%), Query Frame = 0


Query: 1   MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 60
           M K KE+E+NVA TEKELVRGSSSKTRVGPS +K KRKGK P NSKGK VAKGKCYHCNE
Sbjct: 34  MGKGKEVEANVATTEKELVRGSSSKTRVGPSQIKKKRKGKNPKNSKGKKVAKGKCYHCNE 93

Query: 61  DGHWLRNCPKYLAEKKAEKEAQ 82
           D HWL+NC KYLAEKKAEKEAQ
Sbjct: 94  DRHWLKNCLKYLAEKKAEKEAQ 115

[Close]

BLAST of IVF0003012.1 vs. NCBI nr
Match: KAA0035756.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (338), Expect = 5.31e-38
Identity = 67/82 (81.71%), Postives = 72/82 (87.80%), Query Frame = 0


Query: 1   MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 60
           M K KE+E+N+A  EKELV GSSSKTRVGPS +K K KGKTP NSKGK VAKGKCYHCNE
Sbjct: 71  MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  DGHWLRNCPKYLAEKKAEKEAQ 82
           +GHWLRNCPKYLAEKKAEKEAQ
Sbjct: 131 EGHWLRNCPKYLAEKKAEKEAQ 152

[Close]

BLAST of IVF0003012.1 vs. NCBI nr
Match: TYK04285.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 133 bits (335), Expect = 2.33e-37
Identity = 67/84 (79.76%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1   MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 60
           M K KE+E+NV  TEKELV GSSSKTRVG   MK KRKGKTP NS+GK VAKGKCYHCNE
Sbjct: 103 MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNE 162

Query: 61  DGHWLRNCPKYLAEKKAEKEAQEN 84
           DGHWLRNCPKYL EKKA+KEAQ N
Sbjct: 163 DGHWLRNCPKYLTEKKADKEAQRN 186

The following BLAST results are available for this feature:

BLAST of IVF0003012.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003012.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TXW7	7.9e-39	100.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold688G0029...	[more]
A0A5D3E1U5	1.5e-29	82.93	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G0010...	[more]
A0A5A7T0L9	7.5e-29	81.71	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G0029...	[more]
A0A5A7TUI5	9.7e-29	82.93	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G0048...	[more]
A0A5D3BYQ2	1.7e-28	79.76	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G0010...	[more]

BLAST of IVF0003012.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046201.1	2.94e-50	100.00	gag/pol protein [Cucumis melo var. makuwa] >TYK14168.1 gag/pol protein [Cucumis ...	[more]
TYK29862.1	6.52e-39	82.93	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0045181.1	2.51e-38	82.93	gag/pol protein [Cucumis melo var. makuwa] >TYK27371.1 gag/pol protein [Cucumis ...	[more]
KAA0035756.1	5.31e-38	81.71	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK04285.1	2.33e-37	79.76	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0003012.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 54..70 e-value: 0.0015 score: 27.8
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 53..70 e-value: 4.3E-6 score: 26.6
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 54..70 score: 9.866995
None	No IPR available	GENE3D	4.10.60.10		coord: 19..83 e-value: 3.1E-9 score: 38.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 36..73

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0003012	IVF0003012	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0003012.1-exon	IVF0003012.1-exon-chr10:14900970..14901224	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0003012.1-cds	IVF0003012.1-cds-chr10:14900970..14901224	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0003012.1	IVF0003012.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding