IVF0003012 (gene) Melon (IVF77) v1

Overview
NameIVF0003012
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Locationchr10: 14900970 .. 14901224 (-)
RNA-Seq ExpressionIVF0003012
SyntenyIVF0003012
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAAGGACAAAGAAATGGAATCAAATGTTGCTATCACAGAGAAAGAATTAGTGAGAGGATCATCCTCTAAGACTAGAGTTGGACCTTCACTTATGAAAAATAAGAGAAAGGGGAAGACTCCCATGAATAGTAAGGGAAAGAATGTTGCTAAAGGTAAATGTTACCACTGCAACGAGGATGGACATTGGTTAAGAAATTGCCCAAAGTACCTTGCTGAGAAGAAAGCTGAGAAGGAAGCACAAGAAAACTAG

mRNA sequence

ATGAGTAAGGACAAAGAAATGGAATCAAATGTTGCTATCACAGAGAAAGAATTAGTGAGAGGATCATCCTCTAAGACTAGAGTTGGACCTTCACTTATGAAAAATAAGAGAAAGGGGAAGACTCCCATGAATAGTAAGGGAAAGAATGTTGCTAAAGGTAAATGTTACCACTGCAACGAGGATGGACATTGGTTAAGAAATTGCCCAAAGTACCTTGCTGAGAAGAAAGCTGAGAAGGAAGCACAAGAAAACTAG

Coding sequence (CDS)

ATGAGTAAGGACAAAGAAATGGAATCAAATGTTGCTATCACAGAGAAAGAATTAGTGAGAGGATCATCCTCTAAGACTAGAGTTGGACCTTCACTTATGAAAAATAAGAGAAAGGGGAAGACTCCCATGAATAGTAAGGGAAAGAATGTTGCTAAAGGTAAATGTTACCACTGCAACGAGGATGGACATTGGTTAAGAAATTGCCCAAAGTACCTTGCTGAGAAGAAAGCTGAGAAGGAAGCACAAGAAAACTAG

Protein sequence

MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQEN
Homology
BLAST of IVF0003012 vs. ExPASy TrEMBL
Match: A0A5A7TXW7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold688G00290 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 7.9e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 1   MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 60
           MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE
Sbjct: 150 MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 209

Query: 61  DGHWLRNCPKYLAEKKAEKEAQEN 85
           DGHWLRNCPKYLAEKKAEKEAQEN
Sbjct: 210 DGHWLRNCPKYLAEKKAEKEAQEN 233

BLAST of IVF0003012 vs. ExPASy TrEMBL
Match: A0A5D3E1U5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001090 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.5e-29
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 0

Query: 1   MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 60
           M K KE+E+N+A TEKELV GSSSKTRVGPS +K K KGKTP NSKGK VAKGKCYHCNE
Sbjct: 71  MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  DGHWLRNCPKYLAEKKAEKEAQ 83
           DGHWLRNCP+YLAEKKAEKEAQ
Sbjct: 131 DGHWLRNCPEYLAEKKAEKEAQ 152

BLAST of IVF0003012 vs. ExPASy TrEMBL
Match: A0A5A7T0L9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00290 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 7.5e-29
Identity = 67/82 (81.71%), Postives = 72/82 (87.80%), Query Frame = 0

Query: 1   MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 60
           M K KE+E+N+A  EKELV GSSSKTRVGPS +K K KGKTP NSKGK VAKGKCYHCNE
Sbjct: 71  MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  DGHWLRNCPKYLAEKKAEKEAQ 83
           +GHWLRNCPKYLAEKKAEKEAQ
Sbjct: 131 EGHWLRNCPKYLAEKKAEKEAQ 152

BLAST of IVF0003012 vs. ExPASy TrEMBL
Match: A0A5A7TUI5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00480 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 9.7e-29
Identity = 68/82 (82.93%), Postives = 72/82 (87.80%), Query Frame = 0

Query: 1   MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 60
           M K KE+E+NVA TEKELVRGSSSKTRVGPS +K KRKGK P NSKGK VAKGKCYHCNE
Sbjct: 34  MGKGKEVEANVATTEKELVRGSSSKTRVGPSQIKKKRKGKNPKNSKGKKVAKGKCYHCNE 93

Query: 61  DGHWLRNCPKYLAEKKAEKEAQ 83
           D HWL+NC KYLAEKKAEKEAQ
Sbjct: 94  DRHWLKNCLKYLAEKKAEKEAQ 115

BLAST of IVF0003012 vs. ExPASy TrEMBL
Match: A0A5D3BYQ2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00100 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.7e-28
Identity = 67/84 (79.76%), Postives = 71/84 (84.52%), Query Frame = 0

Query: 1   MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 60
           M K KE+E+NV  TEKELV GSSSKTRVG   MK KRKGKTP NS+GK VAKGKCYHCNE
Sbjct: 103 MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNE 162

Query: 61  DGHWLRNCPKYLAEKKAEKEAQEN 85
           DGHWLRNCPKYL EKKA+KEAQ N
Sbjct: 163 DGHWLRNCPKYLTEKKADKEAQRN 186

BLAST of IVF0003012 vs. NCBI nr
Match: KAA0046201.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14168.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (424), Expect = 2.94e-50
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 1   MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 60
           MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE
Sbjct: 150 MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 209

Query: 61  DGHWLRNCPKYLAEKKAEKEAQEN 84
           DGHWLRNCPKYLAEKKAEKEAQEN
Sbjct: 210 DGHWLRNCPKYLAEKKAEKEAQEN 233

BLAST of IVF0003012 vs. NCBI nr
Match: TYK29862.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (344), Expect = 6.52e-39
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 0

Query: 1   MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 60
           M K KE+E+N+A TEKELV GSSSKTRVGPS +K K KGKTP NSKGK VAKGKCYHCNE
Sbjct: 71  MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  DGHWLRNCPKYLAEKKAEKEAQ 82
           DGHWLRNCP+YLAEKKAEKEAQ
Sbjct: 131 DGHWLRNCPEYLAEKKAEKEAQ 152

BLAST of IVF0003012 vs. NCBI nr
Match: KAA0045181.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK27371.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (337), Expect = 2.51e-38
Identity = 68/82 (82.93%), Postives = 72/82 (87.80%), Query Frame = 0

Query: 1   MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 60
           M K KE+E+NVA TEKELVRGSSSKTRVGPS +K KRKGK P NSKGK VAKGKCYHCNE
Sbjct: 34  MGKGKEVEANVATTEKELVRGSSSKTRVGPSQIKKKRKGKNPKNSKGKKVAKGKCYHCNE 93

Query: 61  DGHWLRNCPKYLAEKKAEKEAQ 82
           D HWL+NC KYLAEKKAEKEAQ
Sbjct: 94  DRHWLKNCLKYLAEKKAEKEAQ 115

BLAST of IVF0003012 vs. NCBI nr
Match: KAA0035756.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (338), Expect = 5.31e-38
Identity = 67/82 (81.71%), Postives = 72/82 (87.80%), Query Frame = 0

Query: 1   MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 60
           M K KE+E+N+A  EKELV GSSSKTRVGPS +K K KGKTP NSKGK VAKGKCYHCNE
Sbjct: 71  MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  DGHWLRNCPKYLAEKKAEKEAQ 82
           +GHWLRNCPKYLAEKKAEKEAQ
Sbjct: 131 EGHWLRNCPKYLAEKKAEKEAQ 152

BLAST of IVF0003012 vs. NCBI nr
Match: TYK04285.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 133 bits (335), Expect = 2.33e-37
Identity = 67/84 (79.76%), Postives = 71/84 (84.52%), Query Frame = 0

Query: 1   MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 60
           M K KE+E+NV  TEKELV GSSSKTRVG   MK KRKGKTP NS+GK VAKGKCYHCNE
Sbjct: 103 MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNE 162

Query: 61  DGHWLRNCPKYLAEKKAEKEAQEN 84
           DGHWLRNCPKYL EKKA+KEAQ N
Sbjct: 163 DGHWLRNCPKYLTEKKADKEAQRN 186

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TXW77.9e-39100.00Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold688G0029... [more]
A0A5D3E1U51.5e-2982.93Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G0010... [more]
A0A5A7T0L97.5e-2981.71Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G0029... [more]
A0A5A7TUI59.7e-2982.93Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G0048... [more]
A0A5D3BYQ21.7e-2879.76Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G0010... [more]
Match NameE-valueIdentityDescription
KAA0046201.12.94e-50100.00gag/pol protein [Cucumis melo var. makuwa] >TYK14168.1 gag/pol protein [Cucumis ... [more]
TYK29862.16.52e-3982.93gag/pol protein [Cucumis melo var. makuwa][more]
KAA0045181.12.51e-3882.93gag/pol protein [Cucumis melo var. makuwa] >TYK27371.1 gag/pol protein [Cucumis ... [more]
KAA0035756.15.31e-3881.71gag/pol protein [Cucumis melo var. makuwa][more]
TYK04285.12.33e-3779.76gag/pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 54..70
e-value: 0.0015
score: 27.8
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 53..70
e-value: 4.3E-6
score: 26.6
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 54..70
score: 9.866995
NoneNo IPR availableGENE3D4.10.60.10coord: 19..83
e-value: 3.1E-9
score: 38.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..52
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 36..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003012.1IVF0003012.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding