IVF0000987.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0000987.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Splicing factor YJU2
Location	chr10: 24582734 .. 24583142 (+)
Sequence length	270
RNA-Seq Expression	IVF0000987.1
Synteny	IVF0000987.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGAGAGGAAGGTGCTTAACAAATACTACCCACCGGATTTTGATCCGTCAAAGCTACCAAGGGTTCGTAGACCCAAAAACCAGCAAATGAAGGTTCGTATGATGCTTCCTATGAGCATCCGGTGCAATACTTGTGGTAATTACATATACAAGGGCACAAAGTTCAATTCTCGCAAGGAGGACGTCATTGGTGAGGCAAGGGAATCCCTTTTATATATTTTTTATATTTTTAACCTAAAAGATGTTTATTCCTTTTGTAATTGATTTTCTGATTTCTCATGTATTTTTTTCCTTTTATTTCAGACATATTTGGGAATTCAAATTTTTAGGTTCTACTTCAAGTGTACCAGATGTTCTGCTGAGCTTACCATTAAAACAGACCCCCAAAACTCAGACTACGTTGTAG

mRNA sequence

ATGGGTGAGAGGAAGGTGCTTAACAAATACTACCCACCGGATTTTGATCCGTCAAAGCTACCAAGGGTTCGTAGACCCAAAAACCAGCAAATGAAGGTTCGTATGATGCTTCCTATGAGCATCCGGTGCAATACTTGTGGTAATTACATATACAAGGGCACAAAGTTCAATTCTCGCAAGGAGGACGTCATTGGTTCTACTTCAAGTGTACCAGATGTTCTGCTGAGCTTACCATTAAAACAGACCCCCAAAACTCAGACTACGTTGTAG

Coding sequence (CDS)

ATGGGTGAGAGGAAGGTGCTTAACAAATACTACCCACCGGATTTTGATCCGTCAAAGCTACCAAGGGTTCGTAGACCCAAAAACCAGCAAATGAAGGTTCGTATGATGCTTCCTATGAGCATCCGGTGCAATACTTGTGGTAATTACATATACAAGGGCACAAAGTTCAATTCTCGCAAGGAGGACGTCATTGGTTCTACTTCAAGTGTACCAGATGTTCTGCTGAGCTTACCATTAAAACAGACCCCCAAAACTCAGACTACGTTGTAG

Protein sequence

MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGSTSSVPDVLLSLPLKQTPKTQTTL

Homology

[Close]

BLAST of IVF0000987.1 vs. ExPASy Swiss-Prot
Match: Q9BW85 (Splicing factor YJU2 OS=Homo sapiens OX=9606 GN=YJU2 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.8e-21
Identity = 47/79 (59.49%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
          M ERKVLNKYYPPDFDPSK+P+++ PK++Q  VR+M P ++RC TCG YIYKG KFN+RK
Sbjct: 1  MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCKTCGEYIYKGKKFNARK 60

Query: 61 EDVIGSTSSVPDVLLSLPL 80
          E V        +V L LP+
Sbjct: 61 ETVQN------EVYLGLPI 73

[Close]

BLAST of IVF0000987.1 vs. ExPASy Swiss-Prot
Match: A8WHR3 (Splicing factor YJU2 OS=Danio rerio OX=7955 GN=yju2 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.6e-21
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
          M ERKVLNKYYPPDFDPSK+P+++ PK++Q  VR+M P ++RC TCG YIYKG KFN+RK
Sbjct: 1  MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCKTCGEYIYKGKKFNARK 60

Query: 61 EDV 64
          E V
Sbjct: 61 ETV 63

[Close]

BLAST of IVF0000987.1 vs. ExPASy Swiss-Prot
Match: Q9D6J3 (Splicing factor YJU2 OS=Mus musculus OX=10090 GN=Yju2 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.6e-21
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
          M ERKVLNKYYPPDFDPSK+P+++ PK++Q  VR+M P ++RC TCG YIYKG KFN+RK
Sbjct: 1  MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCKTCGEYIYKGKKFNARK 60

Query: 61 EDV 64
          E V
Sbjct: 61 ETV 63

[Close]

BLAST of IVF0000987.1 vs. ExPASy Swiss-Prot
Match: Q54WR5 (Splicing factor YJU2 OS=Dictyostelium discoideum OX=44689 GN=yju2 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.5e-18
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
          MGERKV++KYYPPDFDPSK+ +++  +    KV  MLPMSIRCNTCG YI +GTKFN++K
Sbjct: 1  MGERKVISKYYPPDFDPSKVAKIKVKRPTFTKVTTMLPMSIRCNTCGEYIGRGTKFNAKK 60

Query: 61 EDV 64
          E V
Sbjct: 61 ETV 63

[Close]

BLAST of IVF0000987.1 vs. ExPASy Swiss-Prot
Match: Q9P7C5 (Splicing factor YJU2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cwf16 PE=1 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 4.8e-15
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQ-----QMKVRMMLPMSIRCNTCGNYIYKGTK 60
          M ERKVLNKY PPD+DPS  P  ++ K Q     ++ VR+M P S+RC+TCG YIYKG K
Sbjct: 1  MSERKVLNKYIPPDYDPSIRPPKKKKKFQGPNGGKLTVRLMTPFSMRCHTCGEYIYKGKK 60

Query: 61 FNSRKE 62
          FN+RKE
Sbjct: 61 FNARKE 66

[Close]

BLAST of IVF0000987.1 vs. ExPASy TrEMBL
Match: A0A0B0MV50 (Splicing factor YJU2 OS=Gossypium arboreum OX=29729 GN=LOC108474488 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 8.4e-31
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
          MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK
Sbjct: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61 EDVIGST 68
          EDVIG T
Sbjct: 61 EDVIGET 67

[Close]

BLAST of IVF0000987.1 vs. ExPASy TrEMBL
Match: A0A6P9EB24 (Splicing factor YJU2 OS=Juglans regia OX=51240 GN=LOC109011793 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 8.4e-31
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
          MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK
Sbjct: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61 EDVIGST 68
          EDVIG T
Sbjct: 61 EDVIGET 67

[Close]

BLAST of IVF0000987.1 vs. ExPASy TrEMBL
Match: A0A6P9ED46 (Splicing factor YJU2 OS=Juglans regia OX=51240 GN=LOC118348244 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 8.4e-31
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
          MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK
Sbjct: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61 EDVIGST 68
          EDVIG T
Sbjct: 61 EDVIGET 67

[Close]

BLAST of IVF0000987.1 vs. ExPASy TrEMBL
Match: A0A6J1AVA5 (Splicing factor YJU2 OS=Herrania umbratica OX=108875 GN=LOC110421628 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 8.4e-31
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
          MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK
Sbjct: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61 EDVIGST 68
          EDVIG T
Sbjct: 61 EDVIGET 67

[Close]

BLAST of IVF0000987.1 vs. ExPASy TrEMBL
Match: A0A5D2RD26 (Splicing factor YJU2 OS=Gossypium tomentosum OX=34277 GN=ES332_A02G008700v1 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 8.4e-31
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
          MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK
Sbjct: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61 EDVIGST 68
          EDVIG T
Sbjct: 61 EDVIGET 67

[Close]

BLAST of IVF0000987.1 vs. NCBI nr
Match: XP_008466970.1 (PREDICTED: coiled-coil domain-containing protein 94 homolog, partial [Cucumis melo])

HSP 1 Score: 140 bits (354), Expect = 4.59e-41
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
          MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK
Sbjct: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61 EDVIGST 67
          EDVIG T
Sbjct: 61 EDVIGET 67

[Close]

BLAST of IVF0000987.1 vs. NCBI nr
Match: KAF9840338.1 (hypothetical protein H0E87_008065 [Populus deltoides])

HSP 1 Score: 139 bits (349), Expect = 7.02e-40
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
          MGERKVLNKYYPPDFDPSKLPR+RRPKNQQ+KVRMMLPMSIRCNTCGNYIYKGTKFNSRK
Sbjct: 1  MGERKVLNKYYPPDFDPSKLPRIRRPKNQQIKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61 EDVIGST 67
          EDVIG T
Sbjct: 61 EDVIGET 67

[Close]

BLAST of IVF0000987.1 vs. NCBI nr
Match: XP_016903347.1 (PREDICTED: coiled-coil domain-containing protein 94 homolog, partial [Cucumis melo])

HSP 1 Score: 137 bits (345), Expect = 9.27e-40
Identity = 65/67 (97.01%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
          MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGN IYKGTKFNSRK
Sbjct: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60

Query: 61 EDVIGST 67
          EDVIG T
Sbjct: 61 EDVIGET 67

[Close]

BLAST of IVF0000987.1 vs. NCBI nr
Match: KAF9839281.1 (hypothetical protein H0E87_007259 [Populus deltoides])

HSP 1 Score: 143 bits (360), Expect = 1.13e-39
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
          MGERKVLNKYYPPDFDPSKLPR+RRPKNQQ+KVRMMLPMSIRCNTCGNYIYKGTKFNSRK
Sbjct: 1  MGERKVLNKYYPPDFDPSKLPRIRRPKNQQIKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61 EDVIGSTSSVPDVLLSL 77
          EDVIG +  VP  +L+L
Sbjct: 61 EDVIGESKVVPRGILNL 77

[Close]

BLAST of IVF0000987.1 vs. NCBI nr
Match: CBI14833.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 139 bits (349), Expect = 1.98e-39
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
          MGERKVLNKYYPPDFDPSKLPR+RRPKNQQ+KVRMMLPMSIRCNTCGNYIYKGTKFNSRK
Sbjct: 1  MGERKVLNKYYPPDFDPSKLPRIRRPKNQQIKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61 EDVIGST 67
          EDVIG T
Sbjct: 61 EDVIGET 67

[Close]

BLAST of IVF0000987.1 vs. TAIR 10
Match: AT1G17130.1 (Family of unknown function (DUF572) )

HSP 1 Score: 132.9 bits (333), Expect = 1.3e-31
Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
          MGERKVLNKYYPPDFDP+KL R+RRPKNQQ+KVRMMLPMS+RC TCGNYIYKGTKFNSRK
Sbjct: 1  MGERKVLNKYYPPDFDPAKLQRLRRPKNQQIKVRMMLPMSVRCGTCGNYIYKGTKFNSRK 60

Query: 61 EDVIGST 68
          EDVIG T
Sbjct: 61 EDVIGET 67

[Close]

BLAST of IVF0000987.1 vs. TAIR 10
Match: AT1G17130.2 (Family of unknown function (DUF572) )

HSP 1 Score: 131.7 bits (330), Expect = 2.9e-31
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
          MGERKVLNKYYPPDFDP+KL R+RRPKNQQ+KVRMMLPMS+RC TCGNYIYKGTKFNSRK
Sbjct: 1  MGERKVLNKYYPPDFDPAKLQRLRRPKNQQIKVRMMLPMSVRCGTCGNYIYKGTKFNSRK 60

Query: 61 EDVIGSTSS 70
          EDVIG   S
Sbjct: 61 EDVIGENFS 69

[Close]

BLAST of IVF0000987.1 vs. TAIR 10
Match: AT3G43250.1 (Family of unknown function (DUF572) )

HSP 1 Score: 110.2 bits (274), Expect = 8.9e-25
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
          MGERK LNKYYPPDFDP K+ R+++PKNQQ K+R MLP+ +RCNTCGNY+ +GTKFN R+
Sbjct: 1  MGERKNLNKYYPPDFDPKKIHRIKKPKNQQKKIRFMLPVRVRCNTCGNYMSEGTKFNCRQ 60

Query: 61 EDVIGST 68
          EDVI  T
Sbjct: 61 EDVITET 67

[Close]

BLAST of IVF0000987.1 vs. TAIR 10
Match: AT2G32050.1 (Family of unknown function (DUF572) )

HSP 1 Score: 109.4 bits (272), Expect = 1.5e-24
Identity = 46/67 (68.66%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
          MGERK LNKYYPP+FDP ++PR+R+PKNQQ K+R M+P+ IRCNTCGNY+ +GTK N R+
Sbjct: 1  MGERKGLNKYYPPNFDPKQIPRIRKPKNQQRKIRSMVPLRIRCNTCGNYMSEGTKINCRE 60

Query: 61 EDVIGST 68
          E+VIG T
Sbjct: 61 ENVIGET 67

[Close]

BLAST of IVF0000987.1 vs. TAIR 10
Match: AT2G29430.1 (Family of unknown function (DUF572) )

HSP 1 Score: 47.4 bits (111), Expect = 7.1e-06
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 0


Query: 35 MMLPMSIRCNTCGNYIYKGTKFNSRKEDVIGST 68
          + LPM ++CN C N + KGTKF SR EDVIG T
Sbjct: 8  LSLPMRLQCNNCDNIMSKGTKFTSRVEDVIGET 40

The following BLAST results are available for this feature:

BLAST of IVF0000987.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9BW85	5.8e-21	59.49	Splicing factor YJU2 OS=Homo sapiens OX=9606 GN=YJU2 PE=1 SV=1	[more]
A8WHR3	7.6e-21	68.25	Splicing factor YJU2 OS=Danio rerio OX=7955 GN=yju2 PE=1 SV=1	[more]
Q9D6J3	7.6e-21	68.25	Splicing factor YJU2 OS=Mus musculus OX=10090 GN=Yju2 PE=1 SV=1	[more]
Q54WR5	3.5e-18	65.08	Splicing factor YJU2 OS=Dictyostelium discoideum OX=44689 GN=yju2 PE=3 SV=1	[more]
Q9P7C5	4.8e-15	59.09	Splicing factor YJU2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=2...	[more]

BLAST of IVF0000987.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0B0MV50	8.4e-31	98.51	Splicing factor YJU2 OS=Gossypium arboreum OX=29729 GN=LOC108474488 PE=3 SV=1	[more]
A0A6P9EB24	8.4e-31	98.51	Splicing factor YJU2 OS=Juglans regia OX=51240 GN=LOC109011793 PE=3 SV=1	[more]
A0A6P9ED46	8.4e-31	98.51	Splicing factor YJU2 OS=Juglans regia OX=51240 GN=LOC118348244 PE=3 SV=1	[more]
A0A6J1AVA5	8.4e-31	98.51	Splicing factor YJU2 OS=Herrania umbratica OX=108875 GN=LOC110421628 PE=3 SV=1	[more]
A0A5D2RD26	8.4e-31	98.51	Splicing factor YJU2 OS=Gossypium tomentosum OX=34277 GN=ES332_A02G008700v1 PE=3...	[more]

BLAST of IVF0000987.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466970.1	4.59e-41	98.51	PREDICTED: coiled-coil domain-containing protein 94 homolog, partial [Cucumis me...	[more]
KAF9840338.1	7.02e-40	95.52	hypothetical protein H0E87_008065 [Populus deltoides]	[more]
XP_016903347.1	9.27e-40	97.01	PREDICTED: coiled-coil domain-containing protein 94 homolog, partial [Cucumis me...	[more]
KAF9839281.1	1.13e-39	87.01	hypothetical protein H0E87_007259 [Populus deltoides]	[more]
CBI14833.3	1.98e-39	95.52	unnamed protein product, partial [Vitis vinifera]	[more]

BLAST of IVF0000987.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17130.1	1.3e-31	89.55	Family of unknown function (DUF572)	[more]
AT1G17130.2	2.9e-31	86.96	Family of unknown function (DUF572)	[more]
AT3G43250.1	8.9e-25	70.15	Family of unknown function (DUF572)	[more]
AT2G32050.1	1.5e-24	68.66	Family of unknown function (DUF572)	[more]
AT2G29430.1	7.1e-06	60.61	Family of unknown function (DUF572)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007590	Saf4/Yju2 protein	PFAM	PF04502	DUF572	coord: 9..65 e-value: 4.5E-31 score: 108.7
IPR007590	Saf4/Yju2 protein	PANTHER	PTHR12111	SPLICING FACTOR YJU2	coord: 1..67
None	No IPR available	PANTHER	PTHR12111:SF7	BNAA02G14200D PROTEIN	coord: 1..67

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0000987	IVF0000987	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0000987.1-exon	IVF0000987.1-exon-chr10:24582734..24582926	exon
IVF0000987.1-exon	IVF0000987.1-exon-chr10:24583066..24583142	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0000987.1-cds	IVF0000987.1-cds-chr10:24582734..24582926	CDS
IVF0000987.1-cds	IVF0000987.1-cds-chr10:24583066..24583142	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0000987.1	IVF0000987.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000349	generation of catalytic spliceosome for first transesterification step
cellular_component	GO:0071006	U2-type catalytic step 1 spliceosome
molecular_function	GO:0046872	metal ion binding