Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGCACAAAAAAAAGAAAAAAAAGAAAAAAAAAAAGAAAACTTTCCTTTCCTCCCCCAAATGGTGCGGGACACCGTTGCGTCTACGGAAAGTAAGAGATGTTACCAATCGGTGAATCTCCGATGTGCGGTGACGATGGCTGCGAGCGCCTGGAACAAGCTCTCCGAGAGTGTCACAAGCGAGTTCCAGAAGGTCCGGCGCGGCGGTCAGCCTGCCGACACCTGAACCGATCTCTTGCAGAGTGTCTGGTGGCGACGGCTTGTCCTAGCGAGGTGGAGGCGGTACGAACCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGCCTCTCCTCTCTACAATTTTGAAACCCTAGATCCTTGAAATCGGTGTAGAAAAAGGGGAAACCTGCAGGTTGGATATCGCATCGGAGAAGATGGATTAATGAGTATGTGAAGATAATGGACCACTCGTGTTTTTAAAAATTCCTTAGAACAAACAAATCTATTCTCTTCTCGTTGAAGGTCAGATCCCGAGAATTGGAAAAGAATGTGAATTTATATCCCTTCTCGAGGAAAAAAAAACATCAAAATTGTTGAATATACTGAGTGAAATTCCTTCCGAGTCGCACAATTTTGTTATTAGCAACTATATATTTTGGTTTTGTTATAGAACATCTCATTGATATCAATTGGAAGTCTCAATATCAAACTCTGAATTTTGTTCAAACAAAGTACTCCCATCTCCTTATTCATCAATCCCACCCTTGATTGCTTTTGCTTGCTTTTTAGAGTTGAAGCTGCCATTCTTGTTGGCTGTTGCCATTGCAAATGCTCTTGCCCTTTCTTTTCATGTTCTGCCAAAATTCGTATTCTAATGGAGCTCACTCACCAGGACCCATTTGTTCATAACCTCACAAAGCCTTCTTTGAAACTTGAGTTTGATTATAAATGGAGTTATAGTGAGTAGTGTTAACTGATTCCAAGCTCCTCGAGATACCTGCATCCAATCTAAGATTGGCCTCAACATCAAAAAAATTTGGTATTAAGCTCTCCTGAATATTGGAACTTGGGACTTCATTTAAGTCAGCCTCCAAGTTCATACCTAGGAAATATTTTGGTCGTTGTTTCAAGTTGATATGATTTTTTATGGAAATTTGGGAACTGGGACAGTACTGTTAAAGCTAATAGGAAAGTTCATATCTGGACTTGACTCTATCAACCATTACAAAGCAATCGTCCATCGTTGAAGAGGGTGGAAACTAGCAAATACATACTTCTTTTTAGAAAATATTGTACTGGGTAGCAAAACATTTTGGTGGTTTGCTTTCTCAAATATGACAGAGTTCTAGGTCTGTTTGAAAACAAAGATAGAATTTAAGTTTTTAGATGTGTTTGATCGGATATTTGAATTCAAATTTCAATATAAACAAATTCT
mRNA sequence
GCGCACAAAAAAAAGAAAAAAAAGAAAAAAAAAAAGAAAACTTTCCTTTCCTCCCCCAAATGGTGCGGGACACCGTTGCGTCTACGGAAAGTAAGAGATGTTACCAATCGGTGAATCTCCGATGTGCGGTGACGATGGCTGCGAGCGCCTGGAACAAGCTCTCCGAGAGTGTCACAAGCGAGTTCCAGAAGGTCCGGCGCGGCGGTCAGCCTGCCGACACCTGAACCGATCTCTTGCAGAGTGTCTGGTGGCGACGGCTTGTCCTAGCGAGGTGGAGGCGGTACGAACCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGCCTCTCCTCTCTACAATTTTGAAACCCTAGATCCTTGAAATCGGTGTAGAAAAAGGGGAAACCTGCAGGTTGGATATCGCATCGGAGAAGATGGATTAATGAGTATGTGAAGATAATGGACCACTCGTGTTTTTAAAAATTCCTTAGAACAAACAAATCTATTCTCTTCTCGTTGAAGGTCAGATCCCGAGAATTGGAAAAGAATGTGAATTTATATCCCTTCTCGAGGAAAAAAAAACATCAAAATTGTTGAATATACTGAGTGAAATTCCTTCCGAGTCGCACAATTTTGTTATTAGCAACTATATATTTTGGTTTTGTTATAGAACATCTCATTGATATCAATTGGAAGTCTCAATATCAAACTCTGAATTTTGTTCAAACAAAGTACTCCCATCTCCTTATTCATCAATCCCACCCTTGATTGCTTTTGCTTGCTTTTTAGAGTTGAAGCTGCCATTCTTGTTGGCTGTTGCCATTGCAAATGCTCTTGCCCTTTCTTTTCATGTTCTGCCAAAATTCGTATTCTAATGGAGCTCACTCACCAGGACCCATTTGTTCATAACCTCACAAAGCCTTCTTTGAAACTTGAGTTTGATTATAAATGGAGTTATAGTGAGTAGTGTTAACTGATTCCAAGCTCCTCGAGATACCTGCATCCAATCTAAGATTGGCCTCAACATCAAAAAAATTTGGTATTAAGCTCTCCTGAATATTGGAACTTGGGACTTCATTTAAGTCAGCCTCCAAGTTCATACCTAGGAAATATTTTGGTCGTTGTTTCAAGTTGATATGATTTTTTATGGAAATTTGGGAACTGGGACAGTACTGTTAAAGCTAATAGGAAAGTTCATATCTGGACTTGACTCTATCAACCATTACAAAGCAATCGTCCATCGTTGAAGAGGGTGGAAACTAGCAAATACATACTTCTTTTTAGAAAATATTGTACTGGGTAGCAAAACATTTTGGTGGTTTGCTTTCTCAAATATGACAGAGTTCTAGGTCTGTTTGAAAACAAAGATAGAATTTAAGTTTTTAGATGTGTTTGATCGGATATTTGAATTCAAATTTCAATATAAACAAATTCT
Coding sequence (CDS)
ATGTTACCAATCGGTGAATCTCCGATGTGCGGTGACGATGGCTGCGAGCGCCTGGAACAAGCTCTCCGAGAGTGTCACAAGCGAGTTCCAGAAGGTCCGGCGCGGCGGTCAGCCTGCCGACACCTGAACCGATCTCTTGCAGAGTGTCTGGTGGCGACGGCTTGTCCTAGCGAGGTGGAGGCGGTACGAACCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGCCTCTCCTCTCTACAATTTTGA
Protein sequence
MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVEAVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Homology
BLAST of IVF0000254.1 vs. ExPASy TrEMBL
Match:
A0A5D3CLT3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00190 PE=4 SV=1)
HSP 1 Score: 193.0 bits (489), Expect = 5.8e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
Query: 1 MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60
MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE
Sbjct: 1 MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60
Query: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 95
AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94
BLAST of IVF0000254.1 vs. ExPASy TrEMBL
Match:
A0A1S3C8S8 (uncharacterized protein LOC103498267 OS=Cucumis melo OX=3656 GN=LOC103498267 PE=4 SV=1)
HSP 1 Score: 193.0 bits (489), Expect = 5.8e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
Query: 1 MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60
MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE
Sbjct: 1 MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60
Query: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 95
AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94
BLAST of IVF0000254.1 vs. ExPASy TrEMBL
Match:
A0A0A0LYC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1)
HSP 1 Score: 180.6 bits (457), Expect = 3.0e-42
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 0
Query: 1 MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60
MLP+GESP+ GD GC+RLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE E
Sbjct: 1 MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60
Query: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 95
AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94
BLAST of IVF0000254.1 vs. ExPASy TrEMBL
Match:
A0A6J1CN74 (uncharacterized protein LOC111012670 OS=Momordica charantia OX=3673 GN=LOC111012670 PE=4 SV=1)
HSP 1 Score: 161.0 bits (406), Expect = 2.4e-36
Identity = 79/95 (83.16%), Postives = 87/95 (91.58%), Query Frame = 0
Query: 1 MLPIGESPMCGD--DGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE 60
MLP GE+P+ G GCERLEQALR+CH+RVP+GPARRSACRHLNRSLAECLVATACP+E
Sbjct: 14 MLPTGEAPISGGGVGGCERLEQALRDCHRRVPDGPARRSACRHLNRSLAECLVATACPNE 73
Query: 61 VEAVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 94
EAVRTLCS+ GTALKRSQC+QAKFSLSFCLSSLQ
Sbjct: 74 AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQ 108
BLAST of IVF0000254.1 vs. ExPASy TrEMBL
Match:
A0A6J1K2P5 (uncharacterized protein LOC111490507 OS=Cucurbita maxima OX=3661 GN=LOC111490507 PE=4 SV=1)
HSP 1 Score: 159.5 bits (402), Expect = 7.0e-36
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 0
Query: 1 MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60
M+P G++P+ GD GCERLEQALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+E E
Sbjct: 1 MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60
Query: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 94
AVRTLCSSGGTALKRSQCEQAKFS S CLSSLQ
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 93
BLAST of IVF0000254.1 vs. NCBI nr
Match:
XP_008459043.1 (PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo] >KAA0043206.1 uncharacterized protein E6C27_scaffold110G00780 [Cucumis melo var. makuwa] >TYK12262.1 uncharacterized protein E5676_scaffold302G00190 [Cucumis melo var. makuwa])
HSP 1 Score: 192 bits (488), Expect = 1.05e-61
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
Query: 1 MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60
MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE
Sbjct: 1 MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60
Query: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94
AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94
BLAST of IVF0000254.1 vs. NCBI nr
Match:
XP_004145445.1 (uncharacterized protein LOC101219184 [Cucumis sativus])
HSP 1 Score: 180 bits (456), Expect = 7.98e-57
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 0
Query: 1 MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60
MLP+GESP+ GD GC+RLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE E
Sbjct: 1 MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60
Query: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94
AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94
BLAST of IVF0000254.1 vs. NCBI nr
Match:
XP_038893663.1 (uncharacterized protein LOC120082530 [Benincasa hispida])
HSP 1 Score: 176 bits (447), Expect = 2.20e-55
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = 0
Query: 1 MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60
MLP G + +CGD GCERLEQALRECHKR+PEGPARRSACRHLNRSLAECLVATACPSE E
Sbjct: 6 MLPTGGASICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRSLAECLVATACPSEAE 65
Query: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94
AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 66 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 99
BLAST of IVF0000254.1 vs. NCBI nr
Match:
XP_022142592.1 (uncharacterized protein LOC111012670 [Momordica charantia])
HSP 1 Score: 160 bits (405), Expect = 7.65e-49
Identity = 79/95 (83.16%), Postives = 87/95 (91.58%), Query Frame = 0
Query: 1 MLPIGESPMCGDD--GCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE 60
MLP GE+P+ G GCERLEQALR+CH+RVP+GPARRSACRHLNRSLAECLVATACP+E
Sbjct: 14 MLPTGEAPISGGGVGGCERLEQALRDCHRRVPDGPARRSACRHLNRSLAECLVATACPNE 73
Query: 61 VEAVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93
EAVRTLCS+ GTALKRSQC+QAKFSLSFCLSSLQ
Sbjct: 74 AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQ 108
BLAST of IVF0000254.1 vs. NCBI nr
Match:
XP_023542217.1 (uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 159 bits (402), Expect = 1.38e-48
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 0
Query: 1 MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60
M+P G++P+ GD GCERLEQALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+E E
Sbjct: 1 MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAE 60
Query: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93
AVRTLCSSGGTALKRSQCEQAKFS S CLSSLQ
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 93
BLAST of IVF0000254.1 vs. TAIR 10
Match:
AT1G31175.1 (unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 121.7 bits (304), Expect = 3.1e-28
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = 0
Query: 4 IGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVEAVR 63
I E PM C+RLE+AL +CH+R+PEGPARRS CRHLN++ AEC+VA ACP E EAVR
Sbjct: 26 IREIPM---KSCDRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPEESEAVR 85
Query: 64 TLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 94
+LCSSGGT+LKR QCE A+ SLS CLS Q
Sbjct: 86 SLCSSGGTSLKRKQCEYAQLSLSLCLSRHQ 112
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3CLT3 | 5.8e-46 | 100.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A1S3C8S8 | 5.8e-46 | 100.00 | uncharacterized protein LOC103498267 OS=Cucumis melo OX=3656 GN=LOC103498267 PE=... | [more] |
| A0A0A0LYC1 | 3.0e-42 | 93.62 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1 | [more] |
| A0A6J1CN74 | 2.4e-36 | 83.16 | uncharacterized protein LOC111012670 OS=Momordica charantia OX=3673 GN=LOC111012... | [more] |
| A0A6J1K2P5 | 7.0e-36 | 81.72 | uncharacterized protein LOC111490507 OS=Cucurbita maxima OX=3661 GN=LOC111490507... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_008459043.1 | 1.05e-61 | 100.00 | PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo] >KAA0043206.1 unc... | [more] |
| XP_004145445.1 | 7.98e-57 | 93.62 | uncharacterized protein LOC101219184 [Cucumis sativus] | [more] |
| XP_038893663.1 | 2.20e-55 | 91.49 | uncharacterized protein LOC120082530 [Benincasa hispida] | [more] |
| XP_022142592.1 | 7.65e-49 | 83.16 | uncharacterized protein LOC111012670 [Momordica charantia] | [more] |
| XP_023542217.1 | 1.38e-48 | 81.72 | uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT1G31175.1 | 3.1e-28 | 66.67 | unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bac... | [more] |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| IVF0000254 | IVF0000254 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| IVF0000254.1-exon | IVF0000254.1-exon-chr12:16211164..16212614 | exon |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| IVF0000254.1-three_prime_utr | IVF0000254.1-three_prime_utr-chr12:16211164..16212232 | three_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| IVF0000254.1-cds | IVF0000254.1-cds-chr12:16212233..16212517 | CDS |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| IVF0000254.1-five_prime_utr | IVF0000254.1-five_prime_utr-chr12:16212518..16212614 | five_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| IVF0000254.1 | IVF0000254.1-protein | polypeptide |
