HG10021673.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021673.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr05: 13622210 .. 13624281 (-)
Sequence length	501
RNA-Seq Expression	HG10021673.1
Synteny	HG10021673.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACCCACCTTTTCTACCTTTTCTTTTCCTTTTCTTCTTCCTTGTGAACTCTTCCTTCTTCCTTTCAAGCTTTCTTCCACTTCTTCACCGGATCAACTTTCTATAACTTACAAAACTACTGCTTGGGCATCAAATGGGTTTGATGTTGCCGTTGGAATGGTGCGCAAGTGACCGTGATCACGAGTTTATTGTTGGAGCTTGCGAGTTTCGTTGGGATCGAGTTGTCGTTGGTAGAAATTTTATAAATTTCTCTCCTCTAAAATAAACTTTCCCTTCCTCCCAAAAAAAAAAAAAAAACTCCCCTTCAAACCTTTCCTTTACCTCTATTTATACTAGTGAGAGGAGCTAAAAAAATATGGTGGGGTGAGTAAGTGGAGGAGGAAGAATTGGGAGGGAGAATAGGGAGGAAGAATAGGTTAGGGAAGAAGTTGAAAGAGATGAATGAATGAAAACGTGGGAGGAAAAGAAAGAAAAAAATAAAATAATAATAATAAAAACTAAAATAGTAATAATAAATAGTAAAATAACGATGATGATATGATTAAAGAACTAGAATTAATTAGGACTTATTTCTTTTCAAAAACAAAATAAAATACAACCCTTTTAAAAGTGAAATAAATAAATAAATGACAAAAAAACATAATAAATAATAATAATAAATAAATAAATAAAAATAAAAATAAAAATACCTAGACCAAATATGGTGTCTACAGTTTGTCCCTCTGTACACATTTCTTTAAGAAAGTGAACAAAGGAGTAGACAAAACATTTGGAGGGAATTTTATTTTTATGAAAGGCATGCATGAAATGTTAATACAAGTAAAGACTAAAACCACTCTTTTTAAAACAAACAAAATAACTCGACCCAATACGCTGCTTCTTTCAACCCTAGTAGCATAATCAACTTTAGATGGAGCAATTTAAGATGTCTGCTAGCGAATCTTTGTAGAAGTGATTGACTTGTTTGCCCCAGTTATTCTCGATGTTTATGCCCATAATGAAAGAATACTAATTGTCTTGATGATATTTTTTTTTTTTTTGGAAATATTGTCTTGATGATATTTTGTGCTTGATATTTCCACTAAAGATAAACATTTCTCCTTTGTTTCATTTTAGTCGGCCCAAAATACCTTAAATTTTCTTTTGTTGAAGCTTATTGAACCTTTCATTTTACTTTAGAGTTACCATTATGTTCGACTTATTTTGTAATTGTTATGATAATTAAAGGAACCATAAAATCCAAACATTAAGACTACATCAAGAAGGAAGAAGAACTTTATTGAGGCAAAATTTCTTCATAACAAAATGGTTAGAAATTCCCAAAAAATAGGGATAAAAAATAGAAATGTAAGTGAAAACAATTCTTAGATAGAATATTGAAATTGAAATATGAGTTTCTCCCGACACTAGTTGATTTTGTGACTTTGTCCATTTTTTAAAAGATAATAAATGAAAAGTTTACGCATAGTATTGATTCATGCTATAAAATGCATGAAATTAGGCTTTTATTTTAGCGTTTTTAATGTGAAAAATGAATTATTGCATGACTTTAATCCCAAATTTGATCTTAATATGCTTAACTGAGCTTAATGAGGACTAATTATGTGTAAAGGATGATTTTTGCGGATTTAGTGCAGATCTGGTACGCTTTTGACAGGTTTCTGGCTAATTTTCATGTGATGCGCCCACAGCAGCAAGTATACCAGCGCTGTTGAGCCCTAATTTTTCAGATCCGATTCTGCCCAAATCAGCTGCGATTTTCTTGGCTAAAAATCCTCAATTTTGCTGGTAAATCCTCAGAACGCAAATCTCGGCCCTCCTTAACCGATTTGGGGACTATAAAAGGTGAAGAAACCCTACGTCTTGAAGAAAACTCACCGCCGCCGCAACCATCACTTCATTCTCCATCTTACTGTGAATTTTCTAGCACCTTGGGATTCTCTTTGAAGTTCAAGCCAGTAGTCTTAAGAACAAAAGTTCCTCTGAGGCGTAGCGGCTCTAGGATTACTCTTCCACAGAAGTGTGCGTTGAGGCAAGATTCTTTCTTGAAGAAGAAAGAATCGTCCTAG

mRNA sequence

ATGACACCCACCTTTTCTACCTTTTCTTTTCCTTTTCTTCTTCCTTGTGAACTCTTCCTTCTTCCTTTCAAGCTTTCTTCCACTTCTTCACCGGATCAACTTTCTATAACTTACAAAACTACTGCTTGGGCATCAAATGGGTTTGATGTTGCCGTTGGAATGATCCGATTCTGCCCAAATCAGCTGCGATTTTCTTGGCTAAAAATCCTCAATTTTGCTGGTAAATCCTCAGAACGCAAATCTCGGCCCTCCTTAACCGATTTGGGGACTATAAAAGGTGAAGAAACCCTACGTCTTGAAGAAAACTCACCGCCGCCGCAACCATCACTTCATTCTCCATCTTACTGTGAATTTTCTAGCACCTTGGGATTCTCTTTGAAGTTCAAGCCAGTAGTCTTAAGAACAAAAGTTCCTCTGAGGCGTAGCGGCTCTAGGATTACTCTTCCACAGAAGTGTGCGTTGAGGCAAGATTCTTTCTTGAAGAAGAAAGAATCGTCCTAG

Coding sequence (CDS)

ATGACACCCACCTTTTCTACCTTTTCTTTTCCTTTTCTTCTTCCTTGTGAACTCTTCCTTCTTCCTTTCAAGCTTTCTTCCACTTCTTCACCGGATCAACTTTCTATAACTTACAAAACTACTGCTTGGGCATCAAATGGGTTTGATGTTGCCGTTGGAATGATCCGATTCTGCCCAAATCAGCTGCGATTTTCTTGGCTAAAAATCCTCAATTTTGCTGGTAAATCCTCAGAACGCAAATCTCGGCCCTCCTTAACCGATTTGGGGACTATAAAAGGTGAAGAAACCCTACGTCTTGAAGAAAACTCACCGCCGCCGCAACCATCACTTCATTCTCCATCTTACTGTGAATTTTCTAGCACCTTGGGATTCTCTTTGAAGTTCAAGCCAGTAGTCTTAAGAACAAAAGTTCCTCTGAGGCGTAGCGGCTCTAGGATTACTCTTCCACAGAAGTGTGCGTTGAGGCAAGATTCTTTCTTGAAGAAGAAAGAATCGTCCTAG

Protein sequence

MTPTFSTFSFPFLLPCELFLLPFKLSSTSSPDQLSITYKTTAWASNGFDVAVGMIRFCPNQLRFSWLKILNFAGKSSERKSRPSLTDLGTIKGEETLRLEENSPPPQPSLHSPSYCEFSSTLGFSLKFKPVVLRTKVPLRRSGSRITLPQKCALRQDSFLKKKESS

Homology

The following BLAST results are available for this feature:

BLAST of HG10021673.1 vs.


Match Name	E-value	Identity	Description

BLAST of HG10021673.1 vs.


Match Name	E-value	Identity	Description

BLAST of HG10021673.1 vs.


Match Name	E-value	Identity	Description

BLAST of HG10021673.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..114

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10021673	HG10021673	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10021673.1-cds	HG10021673.1-cds-Chr05:13622210..13622548	CDS
HG10021673.1-cds	HG10021673.1-cds-Chr05:13624120..13624281	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10021673.1	HG10021673.1-protein	polypeptide