HG10021673.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10021673.1
TypemRNA
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr05: 13622210 .. 13624281 (-)
Sequence length501
RNA-Seq ExpressionHG10021673.1
SyntenyHG10021673.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACCCACCTTTTCTACCTTTTCTTTTCCTTTTCTTCTTCCTTGTGAACTCTTCCTTCTTCCTTTCAAGCTTTCTTCCACTTCTTCACCGGATCAACTTTCTATAACTTACAAAACTACTGCTTGGGCATCAAATGGGTTTGATGTTGCCGTTGGAATGGTGCGCAAGTGACCGTGATCACGAGTTTATTGTTGGAGCTTGCGAGTTTCGTTGGGATCGAGTTGTCGTTGGTAGAAATTTTATAAATTTCTCTCCTCTAAAATAAACTTTCCCTTCCTCCCAAAAAAAAAAAAAAAACTCCCCTTCAAACCTTTCCTTTACCTCTATTTATACTAGTGAGAGGAGCTAAAAAAATATGGTGGGGTGAGTAAGTGGAGGAGGAAGAATTGGGAGGGAGAATAGGGAGGAAGAATAGGTTAGGGAAGAAGTTGAAAGAGATGAATGAATGAAAACGTGGGAGGAAAAGAAAGAAAAAAATAAAATAATAATAATAAAAACTAAAATAGTAATAATAAATAGTAAAATAACGATGATGATATGATTAAAGAACTAGAATTAATTAGGACTTATTTCTTTTCAAAAACAAAATAAAATACAACCCTTTTAAAAGTGAAATAAATAAATAAATGACAAAAAAACATAATAAATAATAATAATAAATAAATAAATAAAAATAAAAATAAAAATACCTAGACCAAATATGGTGTCTACAGTTTGTCCCTCTGTACACATTTCTTTAAGAAAGTGAACAAAGGAGTAGACAAAACATTTGGAGGGAATTTTATTTTTATGAAAGGCATGCATGAAATGTTAATACAAGTAAAGACTAAAACCACTCTTTTTAAAACAAACAAAATAACTCGACCCAATACGCTGCTTCTTTCAACCCTAGTAGCATAATCAACTTTAGATGGAGCAATTTAAGATGTCTGCTAGCGAATCTTTGTAGAAGTGATTGACTTGTTTGCCCCAGTTATTCTCGATGTTTATGCCCATAATGAAAGAATACTAATTGTCTTGATGATATTTTTTTTTTTTTTGGAAATATTGTCTTGATGATATTTTGTGCTTGATATTTCCACTAAAGATAAACATTTCTCCTTTGTTTCATTTTAGTCGGCCCAAAATACCTTAAATTTTCTTTTGTTGAAGCTTATTGAACCTTTCATTTTACTTTAGAGTTACCATTATGTTCGACTTATTTTGTAATTGTTATGATAATTAAAGGAACCATAAAATCCAAACATTAAGACTACATCAAGAAGGAAGAAGAACTTTATTGAGGCAAAATTTCTTCATAACAAAATGGTTAGAAATTCCCAAAAAATAGGGATAAAAAATAGAAATGTAAGTGAAAACAATTCTTAGATAGAATATTGAAATTGAAATATGAGTTTCTCCCGACACTAGTTGATTTTGTGACTTTGTCCATTTTTTAAAAGATAATAAATGAAAAGTTTACGCATAGTATTGATTCATGCTATAAAATGCATGAAATTAGGCTTTTATTTTAGCGTTTTTAATGTGAAAAATGAATTATTGCATGACTTTAATCCCAAATTTGATCTTAATATGCTTAACTGAGCTTAATGAGGACTAATTATGTGTAAAGGATGATTTTTGCGGATTTAGTGCAGATCTGGTACGCTTTTGACAGGTTTCTGGCTAATTTTCATGTGATGCGCCCACAGCAGCAAGTATACCAGCGCTGTTGAGCCCTAATTTTTCAGATCCGATTCTGCCCAAATCAGCTGCGATTTTCTTGGCTAAAAATCCTCAATTTTGCTGGTAAATCCTCAGAACGCAAATCTCGGCCCTCCTTAACCGATTTGGGGACTATAAAAGGTGAAGAAACCCTACGTCTTGAAGAAAACTCACCGCCGCCGCAACCATCACTTCATTCTCCATCTTACTGTGAATTTTCTAGCACCTTGGGATTCTCTTTGAAGTTCAAGCCAGTAGTCTTAAGAACAAAAGTTCCTCTGAGGCGTAGCGGCTCTAGGATTACTCTTCCACAGAAGTGTGCGTTGAGGCAAGATTCTTTCTTGAAGAAGAAAGAATCGTCCTAG

mRNA sequence

ATGACACCCACCTTTTCTACCTTTTCTTTTCCTTTTCTTCTTCCTTGTGAACTCTTCCTTCTTCCTTTCAAGCTTTCTTCCACTTCTTCACCGGATCAACTTTCTATAACTTACAAAACTACTGCTTGGGCATCAAATGGGTTTGATGTTGCCGTTGGAATGATCCGATTCTGCCCAAATCAGCTGCGATTTTCTTGGCTAAAAATCCTCAATTTTGCTGGTAAATCCTCAGAACGCAAATCTCGGCCCTCCTTAACCGATTTGGGGACTATAAAAGGTGAAGAAACCCTACGTCTTGAAGAAAACTCACCGCCGCCGCAACCATCACTTCATTCTCCATCTTACTGTGAATTTTCTAGCACCTTGGGATTCTCTTTGAAGTTCAAGCCAGTAGTCTTAAGAACAAAAGTTCCTCTGAGGCGTAGCGGCTCTAGGATTACTCTTCCACAGAAGTGTGCGTTGAGGCAAGATTCTTTCTTGAAGAAGAAAGAATCGTCCTAG

Coding sequence (CDS)

ATGACACCCACCTTTTCTACCTTTTCTTTTCCTTTTCTTCTTCCTTGTGAACTCTTCCTTCTTCCTTTCAAGCTTTCTTCCACTTCTTCACCGGATCAACTTTCTATAACTTACAAAACTACTGCTTGGGCATCAAATGGGTTTGATGTTGCCGTTGGAATGATCCGATTCTGCCCAAATCAGCTGCGATTTTCTTGGCTAAAAATCCTCAATTTTGCTGGTAAATCCTCAGAACGCAAATCTCGGCCCTCCTTAACCGATTTGGGGACTATAAAAGGTGAAGAAACCCTACGTCTTGAAGAAAACTCACCGCCGCCGCAACCATCACTTCATTCTCCATCTTACTGTGAATTTTCTAGCACCTTGGGATTCTCTTTGAAGTTCAAGCCAGTAGTCTTAAGAACAAAAGTTCCTCTGAGGCGTAGCGGCTCTAGGATTACTCTTCCACAGAAGTGTGCGTTGAGGCAAGATTCTTTCTTGAAGAAGAAAGAATCGTCCTAG

Protein sequence

MTPTFSTFSFPFLLPCELFLLPFKLSSTSSPDQLSITYKTTAWASNGFDVAVGMIRFCPNQLRFSWLKILNFAGKSSERKSRPSLTDLGTIKGEETLRLEENSPPPQPSLHSPSYCEFSSTLGFSLKFKPVVLRTKVPLRRSGSRITLPQKCALRQDSFLKKKESS
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..114

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
HG10021673HG10021673gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
HG10021673.1-cdsHG10021673.1-cds-Chr05:13622210..13622548CDS
HG10021673.1-cdsHG10021673.1-cds-Chr05:13624120..13624281CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
HG10021673.1HG10021673.1-proteinpolypeptide