HG10019470.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019470.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ubiquitin receptor RAD23
Location	Chr04: 22146309 .. 22150829 (-)
Sequence length	1116
RNA-Seq Expression	HG10019470.1
Synteny	HG10019470.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTCACTGTGAAGACTCTCAAAGGAAGCCACTTCGAAATTAGGGTTCAGCCCACCGACACCGTAAGTTTTAACATTTATTTTTTCGTTTTTTTTCCCTCTAACCTTCTTGATTGCTTCATGTGAATATTTGGGCTTGTTTTTTAATTTATTAATGTAGCCGAGTACGCAAGCATTGACACAGCTGGCAATCTCGAGCTTAGTTTAATTGTTTTTCTTTAATATAATTGGAATAGTGTGAAACTACTGGAGGAGTTGTATGGAATTGAAAAGATTTTGAAATTAGGGTTTTCGTGTTACTTAATCTGGAAGCTGCTTTTCTTTCTGAACGTCGATCACTAAAGATATATATATATTTTTTTTTTGAAAATTAAAATTATTTGAATTGTTCGTGATCTGCTGGATTATATGCATTGTTTGAACACAAGCTGGAGAATTTGAAGATATCATGTAGTGCACTGTTCTTGTTGGGTATGCGGTTTTTAGTAGTAAACTTTAACTGCCAACTTTAATTCTGTTTTTGATCATGTGACATTAATCCACTGTTTTTAAATCTAGAAAGTTTCAAAAATGATTTTAATCTATTGATTTGAAATCTGAGAAATGGGTTTAAACTCTTTATTTTGATTGGAATGAGATAGATTTGAAATGAATGTAATTAAAACTTAGTTTGGATGGTAGCCGGAAAAAGGAAAAAAAATTGAATATAAATTGTACTATTATAGGCTTTTAGTCTTGATTTATTAGAATAAACTTCAAATATGTCAAGGTTAAATGAGTGACCTACCTCCAAATTCTACGAAGTCATTCTAAATCCATTCACTTCTGTTAGAAATTTTTTTAACGTAAAAACAAGATAAATCATTCTCTTTTATACGATAACAATCATCATAATTCCTTTGAAATTTGTTATAATTTGAAATCCCTTGAAATTTTGAGCAATCAAACAAATCATAGTTTTTTTTTTTTTTTTGTTGAAATTTCTAATTGTAAAATTTATGGTGTAGGTGATGGCTGTCAAGAAAAATATTGAAGATGTACAAGGAAAGGATAATTATCCTTGTGGTCAACAATTATTGATACACAACGGGAAAGTTCTGAAAGATGAAAGTACACTGGCAGAAAACAAAGTATCTGAAGAGGGTTTTCTTGTTGTCATGCTCAGCAAGGTATCTTTGGTCGTATAATTTTCTTAAAAGAAGAAGCACTAAAGAAATGTTTTTATTTTGGATTTTAATGGATGGCTGAAATATCAAATATGGTTATGCTTAATTGTATACATTTGCTTCTTATGCAGAGCAAAACATCAGGCTCAGCTGGGCAGTCGTCAACTGAGGTAATGTTGACCATTTTTGTTGCAAATTGTTTATGATTATTTAATGTTAACCATCCCTGGACCTATTTATTGCAGCCTGCTCAAAACCCCCCTGTAGCTCAACCAATTTTAAATTCAACTACCGCTACCCAAGTTACACCATTGCCGACTCCTGCACCTCAAGCTCCCACTCAAGCACCGTCATCGTAAGTTTTTCAAGAATGATCTTTGGTATGCATTTTTTTTATCAGTTGAGTAATTATAATCCATATGCATTTTTTGTTCTTGTTTCCCAGTGCCCCCAAGAACACGACGTCTACTTCAGACAGGGTGACAGATAAGTATGGCTTCTATTTCCTATTCACATTTTTTTAACTTCAAGAGGCATGAATTGGTTAGTAAATCACATTCTATTTCCTAATACTAAATCTATGCTCTAAGAAGCACGGATATGGATACAAGACACAGATACGACAATACATGGACATGGCGACACACCATATTTTAAATAAATATCTAGGACACGACACGGCAAGGACACATTTATTAAAATATATAATTTTGATACCAAAAGAAAATTTAAAGTAAATGGGTTGATGCATTTATATGTTTAAAAAACTTAGCTTGATGTTCTCATTTTTGGGGGGGGGGGGGGAACCTAGCTCAAAAGTTGTTGTTATTGTCATATAAGTATCTGTTTAGTTTACTCAACAAGTGTTCAATGTATGTCTAACACATTTGTTGCACTAACAAGTGTCTGATACGTGTCCAATAAGTGTCGGAGTGTCCGACACGTGTCAGACATGGACACGCTAGCTAAGCTAAAGTGTTCGTGCTTCTTAGTCTATGCTACAATATAACATATGTCAAATCTGATATAAGCTACAGACCGGATGTATTTCATAGGAGTTTTTTATTATTAACTACTGGGACAACAGCTGATATCAGAAAGTTTGAGCAATATGTTTCCTCTGTTTTTCTTTATATATAATTGAAACCTTTTGTCTGTTGGTGAGAAGGCTAGTCACTTTTTTGGGGAAATCACTTGCAGTGTGCAAACCGATACCTATGGTCAAGCTGCTTCAAATTTGGTCGCTGGTAATAACCTGGAACAGACCGTTCAACAACTAATGGATATGGGTGGTGGCAACTGGGACAGGGAAACAGTTGTTCGTGCATTAAGAGCTGCTTATAACAATCCAGAGCGAGCAGTGGATTACTTGTACTCTGTATGCCTAAGTTCTACTGTGTGAATTCTCTTGACTGGATGTTTCCAGTCACTAATGGTGTTTTTTATGTTCAGGGTATTCCAGAATCTGCAGAAGTTGCAGTACCAGTGGGTCGTTTTGGTTCTGGTCAAGCCACTGAAACTGATGCATCTCTTCCTGCACCTGTTTCTGGAGCACCCAACACAGCCCCCTTGAATATGTTTCCTCAGGTAAGTTTTGATGCATGAAAAATAAGTTTGTTTGTTTGCTTGCTTGCCCACAATCACTTATTTTTTTATTGGCTTGCAATCATGCAGGAGGCACTTTCTGCTGGCAGCGGCGGCGGCAGCGGTAACCTTGGATCTCTTGAATTCCTTAGAAACAATCCGCAGGTAACTAGTGCAACGTCTTTTATGGGGTTTTCTTGATTGATAAGCTCATTAGCTTTCTTTACTAGACATCTTAGTGCATTGAGTTTAAAAATGCGTTTGCAGTTTGAAGTCCTTTTTACCTAATGGTTGTGTTAGCTTTGCATCTTTTTAACACATTGGTTCACGTATTATGTATCCATTAAAAAGTCGCAAACATTCAATCTAAAAATTCACACATGGATTGTATTAGACCAGTCATATCATTCCATTAGATGTATATCATTTGTACACAGAAACAAAATTTTGTGTTGCTTTATTTCATATGGATGAATAGAATTAAATGCGACGTACTTACTGTATGAGGTTTGTTATCATTGTTCACATTCTAGTTCCAAGCCTTGCGGACGATGGTGCATACAAACCCTCAAATCTTACAGGTCTACACATCCATCTGCTTTGCAGTTTACTTAGTGATTATACTCATGGCTTAGCCAAGAGTTAAATCTTTTGCTTCTGATGGCAGCCCATGCTTCAAGAACTTGGAAAGCAGAATCCCCAGCTTTTGAGACTCATTCAGGATCATCATGCGGAGTTCCTTCAGCTAATCAATGAACCTGTTGAAAATTTTGAGGGGTGAGTCTTACACTACTGTCATCTGGTCAATCTTAAATCTTGTTATCTTGTTAATTAAACCTCCTAGTTCTTCAGTTCTTTAGTTGTGATTGATCACACACATATAAGATGGCCGTTGCATAGAGAACCCTTCTTGTTTTCCCATCATCAAATGTGCAGTGCTTCTGTCGTAGGTTCCTGCGTGGGATAATAATTAGGTAATCACGTCAGGTGTAATAATGGAATGATAGTTCTTCTGTATTGCTCTTATTAATGTTTATCCTTGTGGTCAAACTACAGCATACATTTCCACCAACTTGGCATTGCACCAGCACGGAATTAGTCAACACCACAAGCACAAAACTTAACCTTGTTGCACGGAATGTGCCTAATCTGTATGATTTATTGGTTTTTTCCTTGTGTGATTTAATCTTTGTGCTTAAAAGACAATAGATGGAGTTACCATTTTATCTAGTTGATAATGGTCATCTTTAGAACAAGTCAATCTAAGCATAGTATGAGGTCTCCCTCGCCATTACATGTTGAATTAAAAAAAAGAGGGAAATCAATGTGTCATCTGTAGAACAAGAACAGAACTATTTCTGGGTCTGGTTTATCCGAGATGTTCTCTTCATTGATTATGATTTTTATCGGATAAACCTCTCACATCGCAGCATCTATCTGTAGAACTATAAACAATGTTCTTTCTTTCAGAGAAATGTTTGAACAGGCTGAGCCAGACATGCCTCATGCCATTAATGTCACTCCAGCCGAACAGGCAGCCATCGAACGAGTACGAACTCCTTTATATTCCTTGAGGTGCCTCTTTGTTCTCCCTCTTCAAACTGGATCTTTGTGCTTAACTTTTTTTTTTGCTGCTTGTTCCCTTATGAAGCTCGAGGCAATGGGATTTGATAGAGCATTGGTCATCGAGGCATTTTTGGCATGTGACCGCAACGAGGAACTAGCAGCTAACTACTTACTGGAGAATTCTGGAGATTTTGATGATTAA

mRNA sequence

ATGAAGCTCACTGTGAAGACTCTCAAAGGAAGCCACTTCGAAATTAGGGTTCAGCCCACCGACACCGTGATGGCTGTCAAGAAAAATATTGAAGATGTACAAGGAAAGGATAATTATCCTTGTGGTCAACAATTATTGATACACAACGGGAAAGTTCTGAAAGATGAAAGTACACTGGCAGAAAACAAAGTATCTGAAGAGGGTTTTCTTGTTGTCATGCTCAGCAAGAGCAAAACATCAGGCTCAGCTGGGCAGTCGTCAACTGAGCCTGCTCAAAACCCCCCTGTAGCTCAACCAATTTTAAATTCAACTACCGCTACCCAAGTTACACCATTGCCGACTCCTGCACCTCAAGCTCCCACTCAAGCACCGTCATCTGCCCCCAAGAACACGACGTCTACTTCAGACAGGGTGACAGATAATGTGCAAACCGATACCTATGGTCAAGCTGCTTCAAATTTGGTCGCTGGTAATAACCTGGAACAGACCGTTCAACAACTAATGGATATGGGTGGTGGCAACTGGGACAGGGAAACAGTTGTTCGTGCATTAAGAGCTGCTTATAACAATCCAGAGCGAGCAGTGGATTACTTGTACTCTGGTATTCCAGAATCTGCAGAAGTTGCAGTACCAGTGGGTCGTTTTGGTTCTGGTCAAGCCACTGAAACTGATGCATCTCTTCCTGCACCTGTTTCTGGAGCACCCAACACAGCCCCCTTGAATATGTTTCCTCAGGAGGCACTTTCTGCTGGCAGCGGCGGCGGCAGCGGTAACCTTGGATCTCTTGAATTCCTTAGAAACAATCCGCAGCCCATGCTTCAAGAACTTGGAAAGCAGAATCCCCAGCTTTTGAGACTCATTCAGGATCATCATGCGGAGTTCCTTCAGCTAATCAATGAACCTGTTGAAAATTTTGAGGGAGAAATGTTTGAACAGGCTGAGCCAGACATGCCTCATGCCATTAATGTCACTCCAGCCGAACAGGCAGCCATCGAACGACTCGAGGCAATGGGATTTGATAGAGCATTGGTCATCGAGGCATTTTTGGCATGTGACCGCAACGAGGAACTAGCAGCTAACTACTTACTGGAGAATTCTGGAGATTTTGATGATTAA

Coding sequence (CDS)

ATGAAGCTCACTGTGAAGACTCTCAAAGGAAGCCACTTCGAAATTAGGGTTCAGCCCACCGACACCGTGATGGCTGTCAAGAAAAATATTGAAGATGTACAAGGAAAGGATAATTATCCTTGTGGTCAACAATTATTGATACACAACGGGAAAGTTCTGAAAGATGAAAGTACACTGGCAGAAAACAAAGTATCTGAAGAGGGTTTTCTTGTTGTCATGCTCAGCAAGAGCAAAACATCAGGCTCAGCTGGGCAGTCGTCAACTGAGCCTGCTCAAAACCCCCCTGTAGCTCAACCAATTTTAAATTCAACTACCGCTACCCAAGTTACACCATTGCCGACTCCTGCACCTCAAGCTCCCACTCAAGCACCGTCATCTGCCCCCAAGAACACGACGTCTACTTCAGACAGGGTGACAGATAATGTGCAAACCGATACCTATGGTCAAGCTGCTTCAAATTTGGTCGCTGGTAATAACCTGGAACAGACCGTTCAACAACTAATGGATATGGGTGGTGGCAACTGGGACAGGGAAACAGTTGTTCGTGCATTAAGAGCTGCTTATAACAATCCAGAGCGAGCAGTGGATTACTTGTACTCTGGTATTCCAGAATCTGCAGAAGTTGCAGTACCAGTGGGTCGTTTTGGTTCTGGTCAAGCCACTGAAACTGATGCATCTCTTCCTGCACCTGTTTCTGGAGCACCCAACACAGCCCCCTTGAATATGTTTCCTCAGGAGGCACTTTCTGCTGGCAGCGGCGGCGGCAGCGGTAACCTTGGATCTCTTGAATTCCTTAGAAACAATCCGCAGCCCATGCTTCAAGAACTTGGAAAGCAGAATCCCCAGCTTTTGAGACTCATTCAGGATCATCATGCGGAGTTCCTTCAGCTAATCAATGAACCTGTTGAAAATTTTGAGGGAGAAATGTTTGAACAGGCTGAGCCAGACATGCCTCATGCCATTAATGTCACTCCAGCCGAACAGGCAGCCATCGAACGACTCGAGGCAATGGGATTTGATAGAGCATTGGTCATCGAGGCATTTTTGGCATGTGACCGCAACGAGGAACTAGCAGCTAACTACTTACTGGAGAATTCTGGAGATTTTGATGATTAA

Protein sequence

MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEEGFLVVMLSKSKTSGSAGQSSTEPAQNPPVAQPILNSTTATQVTPLPTPAPQAPTQAPSSAPKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASLPAPVSGAPNTAPLNMFPQEALSAGSGGGSGNLGSLEFLRNNPQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVENFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFDD

Homology

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BLAST of HG10019470.1 vs. NCBI nr
Match: XP_038906275.1 (ubiquitin receptor RAD23b-like [Benincasa hispida])

HSP 1 Score: 687.2 bits (1772), Expect = 7.9e-194
Identity = 359/387 (92.76%), Postives = 364/387 (94.06%), Query Frame = 0


Query: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
           MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA
Sbjct: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60

Query: 61  ENKVSEEGFLVVMLSKSKTSGSAGQSSTEPAQNPPVAQPILNSTTATQVTPLPTPAPQAP 120
           ENKVSEEGFLVVMLSKSK SGSAGQSST+PAQNPPVAQPILNST+ATQVTP PTPAPQAP
Sbjct: 61  ENKVSEEGFLVVMLSKSKASGSAGQSSTQPAQNPPVAQPILNSTSATQVTPSPTPAPQAP 120

Query: 121 TQAPSSAPKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETV 180
           TQAPSSAPKNTTSTSDR TDNVQTDTYGQAASNLVAGNNLEQT+QQLMDMGGGNWDRETV
Sbjct: 121 TQAPSSAPKNTTSTSDRATDNVQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETV 180

Query: 181 VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASLPAPVSGAPNTAPL 240
           VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETD SLPAPVSGAPNTAPL
Sbjct: 181 VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDTSLPAPVSGAPNTAPL 240

Query: 241 NMFPQEALSAGSGGGSGNLGSLEFLRNNP----------------QPMLQELGKQNPQLL 300
           NMFPQEALSAG G GSGNLGSLEFLRNNP                QPMLQELGKQNPQLL
Sbjct: 241 NMFPQEALSAGGGSGSGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLL 300

Query: 301 RLIQDHHAEFLQLINEPVENFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALV 360
           RLIQDHH EFLQLINEP++NFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALV
Sbjct: 301 RLIQDHHTEFLQLINEPIDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALV 360

Query: 361 IEAFLACDRNEELAANYLLENSGDFDD 372
           IEAFLACDRNEELAANYLLENSGDFDD
Sbjct: 361 IEAFLACDRNEELAANYLLENSGDFDD 387

[Close]

BLAST of HG10019470.1 vs. NCBI nr
Match: XP_008462953.1 (PREDICTED: ubiquitin receptor RAD23b isoform X1 [Cucumis melo])

HSP 1 Score: 676.8 bits (1745), Expect = 1.1e-190
Identity = 357/387 (92.25%), Postives = 362/387 (93.54%), Query Frame = 0


Query: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
           MKLTVKTLKGSHFEIRVQ TDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA
Sbjct: 1   MKLTVKTLKGSHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60

Query: 61  ENKVSEEGFLVVMLSKSKTSGSAGQSSTEPAQNPPVAQPILNSTTATQVTPLPTPAPQAP 120
           ENKVSEEGFLVVMLSKSKTS SAGQSST+PAQNPPVAQP+L+ST A QVTP PTPAPQAP
Sbjct: 61  ENKVSEEGFLVVMLSKSKTSASAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPAPQAP 120

Query: 121 TQAPSSAPKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETV 180
           TQAPSSA KNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGG WDRETV
Sbjct: 121 TQAPSSALKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGTWDRETV 180

Query: 181 VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASLPAPVSGAPNTAPL 240
           VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDAS+PAPVSGAPNTAPL
Sbjct: 181 VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPNTAPL 240

Query: 241 NMFPQEALSAGSGGGSGNLGSLEFLRNNP----------------QPMLQELGKQNPQLL 300
           NMFPQEALSAG GGG GNLGSLEFLRNNP                QPMLQELGKQNPQLL
Sbjct: 241 NMFPQEALSAGGGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLL 300

Query: 301 RLIQDHHAEFLQLINEPVENFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALV 360
           RLIQDHHAEFLQLINEPV+NFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALV
Sbjct: 301 RLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALV 360

Query: 361 IEAFLACDRNEELAANYLLENSGDFDD 372
           IEAFLACDRNEELAANYLLENSGDFDD
Sbjct: 361 IEAFLACDRNEELAANYLLENSGDFDD 387

[Close]

BLAST of HG10019470.1 vs. NCBI nr
Match: XP_011651807.2 (ubiquitin receptor RAD23b [Cucumis sativus] >KAE8650953.1 hypothetical protein Csa_002067 [Cucumis sativus])

HSP 1 Score: 669.1 bits (1725), Expect = 2.2e-188
Identity = 358/401 (89.28%), Postives = 364/401 (90.77%), Query Frame = 0


Query: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
           MKLTVKTLKGSHFEIRVQ TDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA
Sbjct: 1   MKLTVKTLKGSHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60

Query: 61  ENKVSEEGFLVVMLSKSKTSGSAGQSSTEPAQNPPVAQPILNSTTATQVTPLPTPA---- 120
           ENKVSEEGFLVVMLSKSKTS SAGQSST+PAQNPPVAQP+L+ST A QVTP PTPA    
Sbjct: 61  ENKVSEEGFLVVMLSKSKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPAAQVT 120

Query: 121 ----------PQAPTQAPSSAPKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQ 180
                      QAPTQAPSSAPKNTTSTS+RVTDNVQTDTYGQAASNLVAGNNLEQTVQQ
Sbjct: 121 PSPTPAPQAPTQAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQ 180

Query: 181 LMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDAS 240
           LMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDAS
Sbjct: 181 LMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDAS 240

Query: 241 LPAPVSGAPNTAPLNMFPQEALSAGSGGGSGNLGSLEFLRNNP----------------Q 300
           +PAPVSGAPNTAPLNMFPQEALSAGSGGG GNLGSLEFLRNNP                Q
Sbjct: 241 VPAPVSGAPNTAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQ 300

Query: 301 PMLQELGKQNPQLLRLIQDHHAEFLQLINEPVENFEGEMFEQAEPDMPHAINVTPAEQAA 360
           PMLQELGKQNPQLLRLIQDHHAEFLQLINEPV+NFEGEMFEQAEPDMPHAINVTPAEQAA
Sbjct: 301 PMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAA 360

Query: 361 IERLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFDD 372
           IERLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFDD
Sbjct: 361 IERLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFDD 401

[Close]

BLAST of HG10019470.1 vs. NCBI nr
Match: XP_022153480.1 (ubiquitin receptor RAD23b-like [Momordica charantia])

HSP 1 Score: 663.3 bits (1710), Expect = 1.2e-186
Identity = 346/387 (89.41%), Postives = 357/387 (92.25%), Query Frame = 0


Query: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
           MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIED+QGKDNYPCGQQLLIHNGKVLKDESTLA
Sbjct: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDESTLA 60

Query: 61  ENKVSEEGFLVVMLSKSKTSGSAGQSSTEPAQNPPVAQPILNSTTATQVTPLPTPAPQAP 120
           ENKVSEEGFLVVMLSKSKTSGS GQSST+PAQ+PPVAQP+LNST  TQVTP PTPA QAP
Sbjct: 61  ENKVSEEGFLVVMLSKSKTSGSVGQSSTQPAQSPPVAQPVLNSTPTTQVTPSPTPALQAP 120

Query: 121 TQAPSSAPKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETV 180
           TQAPSSAP+NTTSTSDRV DNVQTDTYGQAASNLVAGNNLEQT+QQ+MDMGGGNWDRETV
Sbjct: 121 TQAPSSAPRNTTSTSDRVADNVQTDTYGQAASNLVAGNNLEQTIQQIMDMGGGNWDRETV 180

Query: 181 VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASLPAPVSGAPNTAPL 240
           VRALRAAYNNPERAVDYLYSGIPE+AEVAVPV RFGSGQATETDASL AP SGAPNTAPL
Sbjct: 181 VRALRAAYNNPERAVDYLYSGIPETAEVAVPVARFGSGQATETDASLAAPASGAPNTAPL 240

Query: 241 NMFPQEALSAGSGGGSGNLGSLEFLRNNP----------------QPMLQELGKQNPQLL 300
           NMFPQEALS G GGG GNLGSLEFLRNNP                QPMLQELGKQNPQLL
Sbjct: 241 NMFPQEALSGGGGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLL 300

Query: 301 RLIQDHHAEFLQLINEPVENFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALV 360
           RLIQDHHAEFLQLINEP++NFEG+MFEQAE DMPHAINVTPAEQAAIERLEAMGFDRA V
Sbjct: 301 RLIQDHHAEFLQLINEPLDNFEGDMFEQAEQDMPHAINVTPAEQAAIERLEAMGFDRASV 360

Query: 361 IEAFLACDRNEELAANYLLENSGDFDD 372
           IEAFLACDRNEELAANYLLENSGDFDD
Sbjct: 361 IEAFLACDRNEELAANYLLENSGDFDD 387

[Close]

BLAST of HG10019470.1 vs. NCBI nr
Match: XP_022934936.1 (ubiquitin receptor RAD23b-like [Cucurbita moschata])

HSP 1 Score: 655.6 bits (1690), Expect = 2.6e-184
Identity = 348/387 (89.92%), Postives = 356/387 (91.99%), Query Frame = 0


Query: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
           MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIED+QGKDNYPCGQQLLIHNGKVLKDESTLA
Sbjct: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDESTLA 60

Query: 61  ENKVSEEGFLVVMLSKSKTSGSAGQSSTEPAQNPPVAQPILNSTTATQVTPLPTPAPQAP 120
           ENKVSEEGFLVVMLSKSKTSGSAGQSST+PAQ+ PVAQPILNS  ATQVTP PTPAPQA 
Sbjct: 61  ENKVSEEGFLVVMLSKSKTSGSAGQSSTQPAQSTPVAQPILNSAPATQVTPSPTPAPQAS 120

Query: 121 TQAPSSAPKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETV 180
           TQA  SAPKNTTSTSDRVTD++QTDTYGQAASNLVAGNNLEQT+QQLMDMGGGNWDRETV
Sbjct: 121 TQAQLSAPKNTTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETV 180

Query: 181 VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASLPAPVSGAPNTAPL 240
           VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSG ATET+ASLPAP SGAPNTAPL
Sbjct: 181 VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPL 240

Query: 241 NMFPQEALSAGSGGGSGNLGSLEFLRNNP----------------QPMLQELGKQNPQLL 300
           NMFPQEALSAG GG    LGSLEFLRNNP                QPMLQELGKQNPQLL
Sbjct: 241 NMFPQEALSAGGGG----LGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLL 300

Query: 301 RLIQDHHAEFLQLINEPVENFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALV 360
           RLIQDHHAEFLQLINEPV+NFEGEMFEQAEPDMPHAINVTP EQAAIERLEAMGFDRALV
Sbjct: 301 RLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALV 360

Query: 361 IEAFLACDRNEELAANYLLENSGDFDD 372
           IEAFLACDRNEELAANYLLENSGDFDD
Sbjct: 361 IEAFLACDRNEELAANYLLENSGDFDD 383

[Close]

BLAST of HG10019470.1 vs. ExPASy Swiss-Prot
Match: Q84L33 (Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3)

HSP 1 Score: 462.6 bits (1189), Expect = 4.2e-129
Identity = 260/389 (66.84%), Postives = 305/389 (78.41%), Query Frame = 0


Query: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
           MKLTVKTLKGSHFEIRV P+DT+MAVKKNIED QGKDNYPCGQQLLIHNGKVLKDE++L 
Sbjct: 1   MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60

Query: 61  ENKVSEEGFLVVMLSKSKTSGSAGQSSTEPAQNPPVAQPILNSTTATQVTPLPTPAPQAP 120
           ENKV+EEGFLVVMLSKSK+ GSAGQ+S    Q   V+QP+  +T++T+      PA  + 
Sbjct: 61  ENKVTEEGFLVVMLSKSKSGGSAGQAS---VQTSSVSQPVSATTSSTK------PAAPST 120

Query: 121 TQAPSSAPKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETV 180
           TQ   S+P   +    +     QTDTYGQAAS LV+G++LEQ VQQ+M+MGGG+WD+ETV
Sbjct: 121 TQ---SSPVPASPIPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETV 180

Query: 181 VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASLPAPVSGAPNTAPL 240
            RALRAAYNNPERAVDYLYSGIP++AEVAVPV      Q   + A+  AP SG PN++PL
Sbjct: 181 TRALRAAYNNPERAVDYLYSGIPQTAEVAVPV---PEAQIAGSGAAPVAPASGGPNSSPL 240

Query: 241 NMFPQEALSAGSGGGSGNLGSLEFLRNNP----------------QPMLQELGKQNPQLL 300
           ++FPQE ++A    GSG+LG+LEFLRNN                 QPMLQELGKQNPQLL
Sbjct: 241 DLFPQETVAA---AGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLL 300

Query: 301 RLIQDHHAEFLQLINEPVE--NFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRA 360
           RLIQ++ AEFLQL+NEP E  + EG+MF+Q E +MPHAINVTPAEQ AI+RLEAMGFDRA
Sbjct: 301 RLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRA 360

Query: 361 LVIEAFLACDRNEELAANYLLENSGDFDD 372
           LVIEAFLACDRNEELAANYLLENSGDF+D
Sbjct: 361 LVIEAFLACDRNEELAANYLLENSGDFED 371

[Close]

BLAST of HG10019470.1 vs. ExPASy Swiss-Prot
Match: Q84L32 (Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana OX=3702 GN=RAD23A PE=2 SV=2)

HSP 1 Score: 432.6 bits (1111), Expect = 4.6e-120
Identity = 244/389 (62.72%), Postives = 296/389 (76.09%), Query Frame = 0


Query: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
           MKLTVKTLKGSHFEIRV PTDT+MAVKKNIED Q KDNYPCGQQLLIHNGKVLKDE+TL 
Sbjct: 1   MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60

Query: 61  ENKVSEEGFLVVMLSKSKTSGSAGQSSTEPAQNPPVAQPILNSTTATQVTPLPTPAPQAP 120
           ENKV+EEGFLVVMLSKSKT+ SAG SST+P            STT + ++     AP + 
Sbjct: 61  ENKVTEEGFLVVMLSKSKTASSAGPSSTQP-----------TSTTTSTISSTTLAAP-ST 120

Query: 121 TQAPSSAPKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETV 180
           TQ+ +    N+T   ++ T   Q+DTYGQAAS LV+G+++EQ VQQ+M+MGGG+WD+ETV
Sbjct: 121 TQSIAVPASNSTPVQEQPT--AQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETV 180

Query: 181 VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASLPAPVSGAPNTAPL 240
            RALRAAYNNPERAVDYLYSGIPE+  V +P     SG  +  + + P P SG PN++PL
Sbjct: 181 TRALRAAYNNPERAVDYLYSGIPET--VTIPATNL-SGVGSGRELTAPPP-SGGPNSSPL 240

Query: 241 NMFPQEALSAGSGGGSGNLGSLEFLRNNP----------------QPMLQELGKQNPQLL 300
           ++FPQEA+S  +G   G+LG+LEFLR N                 QPMLQELGKQNPQLL
Sbjct: 241 DLFPQEAVSDAAG---GDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLL 300

Query: 301 RLIQDHHAEFLQLINEPVENFEG--EMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRA 360
           RLIQ++ AEFLQL+NEP E  +G  ++F+Q + +MPH++NVTP EQ +IERLEAMGFDRA
Sbjct: 301 RLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRA 360

Query: 361 LVIEAFLACDRNEELAANYLLENSGDFDD 372
           +VIEAFL+CDRNEELAANYLLE+S DF+D
Sbjct: 361 IVIEAFLSCDRNEELAANYLLEHSADFED 368

[Close]

BLAST of HG10019470.1 vs. ExPASy Swiss-Prot
Match: Q84L30 (Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2)

HSP 1 Score: 355.9 bits (912), Expect = 5.5e-97
Identity = 214/393 (54.45%), Postives = 262/393 (66.67%), Query Frame = 0


Query: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
           MK+ VKTL GS+FEI V+P D V  VK  IE V+G + YP  +Q+LIH GKVLKDE+TL 
Sbjct: 1   MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 60

Query: 61  ENKVSEEGFLVVMLSKSKTSGSAGQSSTEPAQNPPVAQPILNSTTATQVTPLPTPAPQAP 120
           EN V E  F+V+MLSK+K S S   +++ PA  P   QP    T AT     PT +   P
Sbjct: 61  ENNVVENSFIVIMLSKTKASPSGASTASAPA--PSATQP---QTVATPQVSAPTASVPVP 120

Query: 121 TQAPSSAPKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETV 180
           T   ++A    T+ S      VQTD YGQAASNLVAG  LE TVQQ++DMGGG+WDR+TV
Sbjct: 121 TSGTATAAAPATAAS------VQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTV 180

Query: 181 VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQ------ATETDASLPAPVSGA 240
           VRALRAA+NNPERAV+YLYSGIP  AE+        +G+      A    A+ PA  +G 
Sbjct: 181 VRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGG 240

Query: 241 PNTAPLNMFPQEALSAGSGGGSGNLGSLEFLRN-------------NP---QPMLQELGK 300
           PN  PLN+FPQ   +A +G G+GN   L+FLRN             NP   QPMLQELGK
Sbjct: 241 PNANPLNLFPQGMPAADAGAGAGN---LDFLRNSQQFQALRAMVQANPQILQPMLQELGK 300

Query: 301 QNPQLLRLIQDHHAEFLQLINEPVENFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMG 360
           QNPQL+RLIQ+H A+FL+LINEPVE  E  M EQ E  MP A+ VTP E+ AIERLE MG
Sbjct: 301 QNPQLVRLIQEHQADFLRLINEPVEGEENVM-EQLEAAMPQAVTVTPEEREAIERLEGMG 360

Query: 361 FDRALVIEAFLACDRNEELAANYLLENSGDFDD 372
           FDRA+V+E F AC++NEELAANYLL++  +F+D
Sbjct: 361 FDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377

[Close]

BLAST of HG10019470.1 vs. ExPASy Swiss-Prot
Match: Q84L31 (Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2)

HSP 1 Score: 346.3 bits (887), Expect = 4.3e-94
Identity = 220/426 (51.64%), Postives = 271/426 (63.62%), Query Frame = 0


Query: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
           MK+ VKTLKG+HFEI V+P D+V+ VKKNIE VQG D YP  +Q+LIH GKVLKDE+T+ 
Sbjct: 1   MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60

Query: 61  ENKVSEEGFLVVMLSKSK------TSGSAGQS---STEPAQNPPVAQPILNSTTATQVTP 120
           ENKV+E  F+V+M++KSK      +S SAG S   S  P+ + P   P   ++ +  V P
Sbjct: 61  ENKVAENSFIVIMMNKSKPASAAASSASAGTSQAKSIPPSTSQPSISPQTPASVSAPVAP 120

Query: 121 LPT-PAPQAPTQAPSSAPKNTTSTS-----------------DRVTDNVQTDTYGQAASN 180
            PT P P APT  P+      T T+                 D      Q D YGQAASN
Sbjct: 121 APTRPPPPAPTPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVGSQGDVYGQAASN 180

Query: 181 LVAGNNLEQTVQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVG 240
           L AG+NLE T+QQ++DMGGG WDRETVV ALRAA+NNPERAV+YLY+GIPE AEV  PV 
Sbjct: 181 LAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVP-PVA 240

Query: 241 R--FGSGQ----ATETDASLPAPVSGAPNTAPLNMFPQEALSAGSGGGSGNLGSLEFLRN 300
           R    +GQ      +T     AP SG PN  PL++FPQ   + G   G+   G+L+FLRN
Sbjct: 241 RPPASAGQPANPPAQTQQPAAAPASG-PNANPLDLFPQGLPNVGGNPGA---GTLDFLRN 300

Query: 301 -------------NP---QPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVE------NF 360
                        NP   QPMLQELGKQNP L+RLIQDH A+FL+LINEPVE      N 
Sbjct: 301 SQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNL 360

Query: 361 EGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLEN 372
            G+M   A    P AI VT  E+ AIERLEAMGF+RALV+E F AC++NEELAANYLL++
Sbjct: 361 LGQM--AAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDH 419

[Close]

BLAST of HG10019470.1 vs. ExPASy Swiss-Prot
Match: Q40742 (Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2)

HSP 1 Score: 311.2 bits (796), Expect = 1.5e-83
Identity = 190/394 (48.22%), Postives = 248/394 (62.94%), Query Frame = 0


Query: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
           MK++VKTLKGS F+I V     V  VK+ IE  QG+  YP  QQ+LIH GKVLKD++TL 
Sbjct: 1   MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60

Query: 61  ENKVSEEGFLVVMLSKSK-TSGSAGQSSTEPAQNPPVAQPILNSTTATQVTPLP-TPAPQ 120
           ENKV E  FLV+ML + K +S SA  +S  P+   P  Q +     A   +  P  PA  
Sbjct: 61  ENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTV----PAAPASQAPVAPATT 120

Query: 121 APTQAPSSAPKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRE 180
            P    +  P  T S +  V  + + D YGQA SNLVAG+NLE T+Q +++MGGG WDR+
Sbjct: 121 VPVTVSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRD 180

Query: 181 TVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATE----TDASLPAPVSGA 240
            V+ AL AA+NNPERAV+YLYSG+PE  ++ VP         T+    T  + P+ +S  
Sbjct: 181 IVLHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQASQATQPAAPSILSSG 240

Query: 241 PNTAPLNMFPQEALSAGSGGGSGNLGSLEFLRNNP----------------QPMLQELGK 300
           PN +PL++FPQ AL   S   +G LG+L+ LRNN                 QP+LQELGK
Sbjct: 241 PNASPLDLFPQ-ALPNASTDAAG-LGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGK 300

Query: 301 QNPQLLRLIQDHHAEFLQLINEPVENFEGE-MFEQAEPDMPHAINVTPAEQAAIERLEAM 360
           QNPQ+L+LIQ++ AEFL LINEP E  + E + +Q    MP  I VTP E  AI RLEAM
Sbjct: 301 QNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAM 360

Query: 361 GFDRALVIEAFLACDRNEELAANYLLENSGDFDD 372
           GFDRALV++ F AC+++E+LAANYLL++  +FDD
Sbjct: 361 GFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388

[Close]

BLAST of HG10019470.1 vs. ExPASy TrEMBL
Match: A0A1S3CI18 (Ubiquitin receptor RAD23 OS=Cucumis melo OX=3656 GN=LOC103501214 PE=3 SV=1)

HSP 1 Score: 676.8 bits (1745), Expect = 5.2e-191
Identity = 357/387 (92.25%), Postives = 362/387 (93.54%), Query Frame = 0


Query: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
           MKLTVKTLKGSHFEIRVQ TDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA
Sbjct: 1   MKLTVKTLKGSHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60

Query: 61  ENKVSEEGFLVVMLSKSKTSGSAGQSSTEPAQNPPVAQPILNSTTATQVTPLPTPAPQAP 120
           ENKVSEEGFLVVMLSKSKTS SAGQSST+PAQNPPVAQP+L+ST A QVTP PTPAPQAP
Sbjct: 61  ENKVSEEGFLVVMLSKSKTSASAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPAPQAP 120

Query: 121 TQAPSSAPKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETV 180
           TQAPSSA KNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGG WDRETV
Sbjct: 121 TQAPSSALKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGTWDRETV 180

Query: 181 VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASLPAPVSGAPNTAPL 240
           VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDAS+PAPVSGAPNTAPL
Sbjct: 181 VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPNTAPL 240

Query: 241 NMFPQEALSAGSGGGSGNLGSLEFLRNNP----------------QPMLQELGKQNPQLL 300
           NMFPQEALSAG GGG GNLGSLEFLRNNP                QPMLQELGKQNPQLL
Sbjct: 241 NMFPQEALSAGGGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLL 300

Query: 301 RLIQDHHAEFLQLINEPVENFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALV 360
           RLIQDHHAEFLQLINEPV+NFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALV
Sbjct: 301 RLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALV 360

Query: 361 IEAFLACDRNEELAANYLLENSGDFDD 372
           IEAFLACDRNEELAANYLLENSGDFDD
Sbjct: 361 IEAFLACDRNEELAANYLLENSGDFDD 387

[Close]

BLAST of HG10019470.1 vs. ExPASy TrEMBL
Match: A0A0A0LF05 (Ubiquitin receptor RAD23 OS=Cucumis sativus OX=3659 GN=Csa_3G710740 PE=3 SV=1)

HSP 1 Score: 676.0 bits (1743), Expect = 8.8e-191
Identity = 359/391 (91.82%), Postives = 365/391 (93.35%), Query Frame = 0


Query: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
           MKLTVKTLKGSHFEIRVQ TDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA
Sbjct: 1   MKLTVKTLKGSHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60

Query: 61  ENKVSEEGFLVVMLSKSKTSGSAGQSSTEPAQNPPVAQPILNSTTATQVTPLPTPAP--- 120
           ENKVSEEGFLVVMLSKSKTS SAGQSST+PAQNPPVAQP+L+ST A QVTP PTPAP   
Sbjct: 61  ENKVSEEGFLVVMLSKSKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSPTPAPQAP 120

Query: 121 -QAPTQAPSSAPKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWD 180
            QAPTQAPSSAPKNTTSTS+RVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWD
Sbjct: 121 TQAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWD 180

Query: 181 RETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASLPAPVSGAPN 240
           RETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDAS+PAPVSGAPN
Sbjct: 181 RETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPN 240

Query: 241 TAPLNMFPQEALSAGSGGGSGNLGSLEFLRNNP----------------QPMLQELGKQN 300
           TAPLNMFPQEALSAGSGGG GNLGSLEFLRNNP                QPMLQELGKQN
Sbjct: 241 TAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQN 300

Query: 301 PQLLRLIQDHHAEFLQLINEPVENFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFD 360
           PQLLRLIQDHHAEFLQLINEPV+NFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFD
Sbjct: 301 PQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFD 360

Query: 361 RALVIEAFLACDRNEELAANYLLENSGDFDD 372
           RALVIEAFLACDRNEELAANYLLENSGDFDD
Sbjct: 361 RALVIEAFLACDRNEELAANYLLENSGDFDD 391

[Close]

BLAST of HG10019470.1 vs. ExPASy TrEMBL
Match: A0A6J1DGY9 (Ubiquitin receptor RAD23 OS=Momordica charantia OX=3673 GN=LOC111020977 PE=3 SV=1)

HSP 1 Score: 663.3 bits (1710), Expect = 5.9e-187
Identity = 346/387 (89.41%), Postives = 357/387 (92.25%), Query Frame = 0


Query: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
           MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIED+QGKDNYPCGQQLLIHNGKVLKDESTLA
Sbjct: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDESTLA 60

Query: 61  ENKVSEEGFLVVMLSKSKTSGSAGQSSTEPAQNPPVAQPILNSTTATQVTPLPTPAPQAP 120
           ENKVSEEGFLVVMLSKSKTSGS GQSST+PAQ+PPVAQP+LNST  TQVTP PTPA QAP
Sbjct: 61  ENKVSEEGFLVVMLSKSKTSGSVGQSSTQPAQSPPVAQPVLNSTPTTQVTPSPTPALQAP 120

Query: 121 TQAPSSAPKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETV 180
           TQAPSSAP+NTTSTSDRV DNVQTDTYGQAASNLVAGNNLEQT+QQ+MDMGGGNWDRETV
Sbjct: 121 TQAPSSAPRNTTSTSDRVADNVQTDTYGQAASNLVAGNNLEQTIQQIMDMGGGNWDRETV 180

Query: 181 VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASLPAPVSGAPNTAPL 240
           VRALRAAYNNPERAVDYLYSGIPE+AEVAVPV RFGSGQATETDASL AP SGAPNTAPL
Sbjct: 181 VRALRAAYNNPERAVDYLYSGIPETAEVAVPVARFGSGQATETDASLAAPASGAPNTAPL 240

Query: 241 NMFPQEALSAGSGGGSGNLGSLEFLRNNP----------------QPMLQELGKQNPQLL 300
           NMFPQEALS G GGG GNLGSLEFLRNNP                QPMLQELGKQNPQLL
Sbjct: 241 NMFPQEALSGGGGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLL 300

Query: 301 RLIQDHHAEFLQLINEPVENFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALV 360
           RLIQDHHAEFLQLINEP++NFEG+MFEQAE DMPHAINVTPAEQAAIERLEAMGFDRA V
Sbjct: 301 RLIQDHHAEFLQLINEPLDNFEGDMFEQAEQDMPHAINVTPAEQAAIERLEAMGFDRASV 360

Query: 361 IEAFLACDRNEELAANYLLENSGDFDD 372
           IEAFLACDRNEELAANYLLENSGDFDD
Sbjct: 361 IEAFLACDRNEELAANYLLENSGDFDD 387

[Close]

BLAST of HG10019470.1 vs. ExPASy TrEMBL
Match: A0A6J1F373 (Ubiquitin receptor RAD23 OS=Cucurbita moschata OX=3662 GN=LOC111441959 PE=3 SV=1)

HSP 1 Score: 655.6 bits (1690), Expect = 1.2e-184
Identity = 348/387 (89.92%), Postives = 356/387 (91.99%), Query Frame = 0


Query: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
           MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIED+QGKDNYPCGQQLLIHNGKVLKDESTLA
Sbjct: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDESTLA 60

Query: 61  ENKVSEEGFLVVMLSKSKTSGSAGQSSTEPAQNPPVAQPILNSTTATQVTPLPTPAPQAP 120
           ENKVSEEGFLVVMLSKSKTSGSAGQSST+PAQ+ PVAQPILNS  ATQVTP PTPAPQA 
Sbjct: 61  ENKVSEEGFLVVMLSKSKTSGSAGQSSTQPAQSTPVAQPILNSAPATQVTPSPTPAPQAS 120

Query: 121 TQAPSSAPKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETV 180
           TQA  SAPKNTTSTSDRVTD++QTDTYGQAASNLVAGNNLEQT+QQLMDMGGGNWDRETV
Sbjct: 121 TQAQLSAPKNTTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETV 180

Query: 181 VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASLPAPVSGAPNTAPL 240
           VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSG ATET+ASLPAP SGAPNTAPL
Sbjct: 181 VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPL 240

Query: 241 NMFPQEALSAGSGGGSGNLGSLEFLRNNP----------------QPMLQELGKQNPQLL 300
           NMFPQEALSAG GG    LGSLEFLRNNP                QPMLQELGKQNPQLL
Sbjct: 241 NMFPQEALSAGGGG----LGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLL 300

Query: 301 RLIQDHHAEFLQLINEPVENFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALV 360
           RLIQDHHAEFLQLINEPV+NFEGEMFEQAEPDMPHAINVTP EQAAIERLEAMGFDRALV
Sbjct: 301 RLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALV 360

Query: 361 IEAFLACDRNEELAANYLLENSGDFDD 372
           IEAFLACDRNEELAANYLLENSGDFDD
Sbjct: 361 IEAFLACDRNEELAANYLLENSGDFDD 383

[Close]

BLAST of HG10019470.1 vs. ExPASy TrEMBL
Match: A0A6J1IZA3 (Ubiquitin receptor RAD23 OS=Cucurbita maxima OX=3661 GN=LOC111482038 PE=3 SV=1)

HSP 1 Score: 653.7 bits (1685), Expect = 4.7e-184
Identity = 347/387 (89.66%), Postives = 355/387 (91.73%), Query Frame = 0


Query: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
           MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIED+QGKDNYPCGQQLLIHNGKVLKDESTL 
Sbjct: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDESTLV 60

Query: 61  ENKVSEEGFLVVMLSKSKTSGSAGQSSTEPAQNPPVAQPILNSTTATQVTPLPTPAPQAP 120
           ENKVSEEGFLVVMLSKSKTSGSAGQSST+PAQ+ PVAQPILNST AT VTP PTPAPQA 
Sbjct: 61  ENKVSEEGFLVVMLSKSKTSGSAGQSSTQPAQSTPVAQPILNSTPATHVTPSPTPAPQAS 120

Query: 121 TQAPSSAPKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETV 180
           TQA  SAPKNTTSTSDRVTD++QTDTYGQAASNLVAGNNLEQT+QQLMDMGGGNWDRETV
Sbjct: 121 TQAHLSAPKNTTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETV 180

Query: 181 VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASLPAPVSGAPNTAPL 240
           VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSG ATET+ASLPAP SGAPNTAPL
Sbjct: 181 VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPL 240

Query: 241 NMFPQEALSAGSGGGSGNLGSLEFLRNNP----------------QPMLQELGKQNPQLL 300
           NMFPQEALSAG GG    LGSLEFLRNNP                QPMLQELGKQNPQLL
Sbjct: 241 NMFPQEALSAGGGG----LGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLL 300

Query: 301 RLIQDHHAEFLQLINEPVENFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALV 360
           RLIQDHHAEFLQLINEPV+NFEGEMFEQAEPDMPHAINVTP EQAAIERLEAMGFDRALV
Sbjct: 301 RLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALV 360

Query: 361 IEAFLACDRNEELAANYLLENSGDFDD 372
           IEAFLACDRNEELAANYLLENSGDFDD
Sbjct: 361 IEAFLACDRNEELAANYLLENSGDFDD 383

[Close]

BLAST of HG10019470.1 vs. TAIR 10
Match: AT1G79650.1 (Rad23 UV excision repair protein family )

HSP 1 Score: 462.6 bits (1189), Expect = 3.0e-130
Identity = 260/389 (66.84%), Postives = 305/389 (78.41%), Query Frame = 0


Query: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
           MKLTVKTLKGSHFEIRV P+DT+MAVKKNIED QGKDNYPCGQQLLIHNGKVLKDE++L 
Sbjct: 1   MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60

Query: 61  ENKVSEEGFLVVMLSKSKTSGSAGQSSTEPAQNPPVAQPILNSTTATQVTPLPTPAPQAP 120
           ENKV+EEGFLVVMLSKSK+ GSAGQ+S    Q   V+QP+  +T++T+      PA  + 
Sbjct: 61  ENKVTEEGFLVVMLSKSKSGGSAGQAS---VQTSSVSQPVSATTSSTK------PAAPST 120

Query: 121 TQAPSSAPKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETV 180
           TQ   S+P   +    +     QTDTYGQAAS LV+G++LEQ VQQ+M+MGGG+WD+ETV
Sbjct: 121 TQ---SSPVPASPIPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETV 180

Query: 181 VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASLPAPVSGAPNTAPL 240
            RALRAAYNNPERAVDYLYSGIP++AEVAVPV      Q   + A+  AP SG PN++PL
Sbjct: 181 TRALRAAYNNPERAVDYLYSGIPQTAEVAVPV---PEAQIAGSGAAPVAPASGGPNSSPL 240

Query: 241 NMFPQEALSAGSGGGSGNLGSLEFLRNNP----------------QPMLQELGKQNPQLL 300
           ++FPQE ++A    GSG+LG+LEFLRNN                 QPMLQELGKQNPQLL
Sbjct: 241 DLFPQETVAA---AGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLL 300

Query: 301 RLIQDHHAEFLQLINEPVE--NFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRA 360
           RLIQ++ AEFLQL+NEP E  + EG+MF+Q E +MPHAINVTPAEQ AI+RLEAMGFDRA
Sbjct: 301 RLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRA 360

Query: 361 LVIEAFLACDRNEELAANYLLENSGDFDD 372
           LVIEAFLACDRNEELAANYLLENSGDF+D
Sbjct: 361 LVIEAFLACDRNEELAANYLLENSGDFED 371

[Close]

BLAST of HG10019470.1 vs. TAIR 10
Match: AT1G79650.2 (Rad23 UV excision repair protein family )

HSP 1 Score: 460.7 bits (1184), Expect = 1.1e-129
Identity = 259/390 (66.41%), Postives = 299/390 (76.67%), Query Frame = 0


Query: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
           MKLTVKTLKGSHFEIRV P+DT+MAVKKNIED QGKDNYPCGQQLLIHNGKVLKDE++L 
Sbjct: 1   MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60

Query: 61  ENKVSEEGFLVVMLSKSKTSGSAGQSSTEP-AQNPPVAQPILNSTTATQVTPLPTPAPQA 120
           ENKV+EEGFLVVMLSKSK+ GSAGQ+S +P +      +P   STT +     P PA   
Sbjct: 61  ENKVTEEGFLVVMLSKSKSGGSAGQASVQPVSATTSSTKPAAPSTTQSS----PVPASPI 120

Query: 121 PTQAPSSAPKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRET 180
           P Q   +A               QTDTYGQAAS LV+G++LEQ VQQ+M+MGGG+WD+ET
Sbjct: 121 PAQEQPAA---------------QTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKET 180

Query: 181 VVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASLPAPVSGAPNTAP 240
           V RALRAAYNNPERAVDYLYSGIP++AEVAVPV      Q   + A+  AP SG PN++P
Sbjct: 181 VTRALRAAYNNPERAVDYLYSGIPQTAEVAVPV---PEAQIAGSGAAPVAPASGGPNSSP 240

Query: 241 LNMFPQEALSAGSGGGSGNLGSLEFLRNNP----------------QPMLQELGKQNPQL 300
           L++FPQE ++A    GSG+LG+LEFLRNN                 QPMLQELGKQNPQL
Sbjct: 241 LDLFPQETVAA---AGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQL 300

Query: 301 LRLIQDHHAEFLQLINEPVE--NFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDR 360
           LRLIQ++ AEFLQL+NEP E  + EG+MF+Q E +MPHAINVTPAEQ AI+RLEAMGFDR
Sbjct: 301 LRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDR 360

Query: 361 ALVIEAFLACDRNEELAANYLLENSGDFDD 372
           ALVIEAFLACDRNEELAANYLLENSGDF+D
Sbjct: 361 ALVIEAFLACDRNEELAANYLLENSGDFED 365

[Close]

BLAST of HG10019470.1 vs. TAIR 10
Match: AT1G79650.3 (Rad23 UV excision repair protein family )

HSP 1 Score: 459.1 bits (1180), Expect = 3.3e-129
Identity = 256/373 (68.63%), Postives = 301/373 (80.70%), Query Frame = 0


Query: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
           MKLTVKTLKGSHFEIRV P+DT+MAVKKNIED QGKDNYPCGQQLLIHNGKVLKDE++L 
Sbjct: 1   MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60

Query: 61  ENKVSEEGFLVVMLSKSKTSGSAGQSSTEPAQNPPVAQPILNSTTATQVTPLPTPAPQAP 120
           ENKV+EEGFLVVMLSKSK+ GSAGQ+S    Q   V+QP+  +T++T+      PA  + 
Sbjct: 61  ENKVTEEGFLVVMLSKSKSGGSAGQAS---VQTSSVSQPVSATTSSTK------PAAPST 120

Query: 121 TQAPSSAPKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETV 180
           TQ   S+P   +    +     QTDTYGQAAS LV+G++LEQ VQQ+M+MGGG+WD+ETV
Sbjct: 121 TQ---SSPVPASPIPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETV 180

Query: 181 VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASLPAPVSGAPNTAPL 240
            RALRAAYNNPERAVDYLYSGIP++AEVAVPV      Q   + A+  AP SG PN++PL
Sbjct: 181 TRALRAAYNNPERAVDYLYSGIPQTAEVAVPV---PEAQIAGSGAAPVAPASGGPNSSPL 240

Query: 241 NMFPQEALSAGSGGGSGNLGSLEFLRNNPQPMLQELGKQNPQLLRLIQDHHAEFLQLINE 300
           ++FPQE ++A    GSG+LG+LEFLRNN     QELGKQNPQLLRLIQ++ AEFLQL+NE
Sbjct: 241 DLFPQETVAA---AGSGDLGTLEFLRNND----QELGKQNPQLLRLIQENQAEFLQLVNE 300

Query: 301 PVE--NFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALVIEAFLACDRNEELA 360
           P E  + EG+MF+Q E +MPHAINVTPAEQ AI+RLEAMGFDRALVIEAFLACDRNEELA
Sbjct: 301 PYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELA 351

Query: 361 ANYLLENSGDFDD 372
           ANYLLENSGDF+D
Sbjct: 361 ANYLLENSGDFED 351

[Close]

BLAST of HG10019470.1 vs. TAIR 10
Match: AT1G79650.4 (Rad23 UV excision repair protein family )

HSP 1 Score: 454.5 bits (1168), Expect = 8.0e-128
Identity = 260/404 (64.36%), Postives = 303/404 (75.00%), Query Frame = 0


Query: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
           MKLTVKTLKGSHFEIRV P+DT+MAVKKNIED QGKDNYPCGQQLLIHNGKVLKDE++L 
Sbjct: 1   MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60

Query: 61  ENKVSEEGFLVVMLSKSKTSGSAGQSSTEPAQNPPVAQPILNSTTATQ------VTPLPT 120
           ENKV+EEGFLVVMLSKSK+ GSAGQ+S    Q   V+QP+  +T++T+          P 
Sbjct: 61  ENKVTEEGFLVVMLSKSKSGGSAGQAS---VQTSSVSQPVSATTSSTKPAAPSTTQSSPV 120

Query: 121 PAPQAPTQAPSSAPKNTTSTSDRV---------TDNVQTDTYGQAASNLVAGNNLEQTVQ 180
           PA   P Q   +      S +                QTDTYGQAAS LV+G++LEQ VQ
Sbjct: 121 PASPIPAQEQPAVYAFVFSFAGLAFCPLYGFPKVSMAQTDTYGQAASTLVSGSSLEQMVQ 180

Query: 181 QLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDA 240
           Q+M+MGGG+WD+ETV RALRAAYNNPERAVDYLYSGIP++AEVAVPV      Q   + A
Sbjct: 181 QIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPV---PEAQIAGSGA 240

Query: 241 SLPAPVSGAPNTAPLNMFPQEALSAGSGGGSGNLGSLEFLRNNP---------------- 300
           +  AP SG PN++PL++FPQE ++A    GSG+LG+LEFLRNN                 
Sbjct: 241 APVAPASGGPNSSPLDLFPQETVAA---AGSGDLGTLEFLRNNDQFQQLRTMVHSNPQIL 300

Query: 301 QPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVE--NFEGEMFEQAEPDMPHAINVTPAE 360
           QPMLQELGKQNPQLLRLIQ++ AEFLQL+NEP E  + EG+MF+Q E +MPHAINVTPAE
Sbjct: 301 QPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAE 360

Query: 361 QAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFDD 372
           Q AI+RLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDF+D
Sbjct: 361 QEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 395

[Close]

BLAST of HG10019470.1 vs. TAIR 10
Match: AT1G16190.1 (Rad23 UV excision repair protein family )

HSP 1 Score: 432.6 bits (1111), Expect = 3.3e-121
Identity = 244/389 (62.72%), Postives = 296/389 (76.09%), Query Frame = 0


Query: 1   MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
           MKLTVKTLKGSHFEIRV PTDT+MAVKKNIED Q KDNYPCGQQLLIHNGKVLKDE+TL 
Sbjct: 1   MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60

Query: 61  ENKVSEEGFLVVMLSKSKTSGSAGQSSTEPAQNPPVAQPILNSTTATQVTPLPTPAPQAP 120
           ENKV+EEGFLVVMLSKSKT+ SAG SST+P            STT + ++     AP + 
Sbjct: 61  ENKVTEEGFLVVMLSKSKTASSAGPSSTQP-----------TSTTTSTISSTTLAAP-ST 120

Query: 121 TQAPSSAPKNTTSTSDRVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETV 180
           TQ+ +    N+T   ++ T   Q+DTYGQAAS LV+G+++EQ VQQ+M+MGGG+WD+ETV
Sbjct: 121 TQSIAVPASNSTPVQEQPT--AQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETV 180

Query: 181 VRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASLPAPVSGAPNTAPL 240
            RALRAAYNNPERAVDYLYSGIPE+  V +P     SG  +  + + P P SG PN++PL
Sbjct: 181 TRALRAAYNNPERAVDYLYSGIPET--VTIPATNL-SGVGSGRELTAPPP-SGGPNSSPL 240

Query: 241 NMFPQEALSAGSGGGSGNLGSLEFLRNNP----------------QPMLQELGKQNPQLL 300
           ++FPQEA+S  +G   G+LG+LEFLR N                 QPMLQELGKQNPQLL
Sbjct: 241 DLFPQEAVSDAAG---GDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLL 300

Query: 301 RLIQDHHAEFLQLINEPVENFEG--EMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRA 360
           RLIQ++ AEFLQL+NEP E  +G  ++F+Q + +MPH++NVTP EQ +IERLEAMGFDRA
Sbjct: 301 RLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRA 360

Query: 361 LVIEAFLACDRNEELAANYLLENSGDFDD 372
           +VIEAFL+CDRNEELAANYLLE+S DF+D
Sbjct: 361 IVIEAFLSCDRNEELAANYLLEHSADFED 368

The following BLAST results are available for this feature:

BLAST of HG10019470.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906275.1	7.9e-194	92.76	ubiquitin receptor RAD23b-like [Benincasa hispida]	[more]
XP_008462953.1	1.1e-190	92.25	PREDICTED: ubiquitin receptor RAD23b isoform X1 [Cucumis melo]	[more]
XP_011651807.2	2.2e-188	89.28	ubiquitin receptor RAD23b [Cucumis sativus] >KAE8650953.1 hypothetical protein C...	[more]
XP_022153480.1	1.2e-186	89.41	ubiquitin receptor RAD23b-like [Momordica charantia]	[more]
XP_022934936.1	2.6e-184	89.92	ubiquitin receptor RAD23b-like [Cucurbita moschata]	[more]

BLAST of HG10019470.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84L33	4.2e-129	66.84	Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3	[more]
Q84L32	4.6e-120	62.72	Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana OX=3702 GN=RAD23A PE=...	[more]
Q84L30	5.5e-97	54.45	Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2	[more]
Q84L31	4.3e-94	51.64	Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2	[more]
Q40742	1.5e-83	48.22	Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RA...	[more]

BLAST of HG10019470.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CI18	5.2e-191	92.25	Ubiquitin receptor RAD23 OS=Cucumis melo OX=3656 GN=LOC103501214 PE=3 SV=1	[more]
A0A0A0LF05	8.8e-191	91.82	Ubiquitin receptor RAD23 OS=Cucumis sativus OX=3659 GN=Csa_3G710740 PE=3 SV=1	[more]
A0A6J1DGY9	5.9e-187	89.41	Ubiquitin receptor RAD23 OS=Momordica charantia OX=3673 GN=LOC111020977 PE=3 SV=...	[more]
A0A6J1F373	1.2e-184	89.92	Ubiquitin receptor RAD23 OS=Cucurbita moschata OX=3662 GN=LOC111441959 PE=3 SV=1	[more]
A0A6J1IZA3	4.7e-184	89.66	Ubiquitin receptor RAD23 OS=Cucurbita maxima OX=3661 GN=LOC111482038 PE=3 SV=1	[more]

BLAST of HG10019470.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79650.1	3.0e-130	66.84	Rad23 UV excision repair protein family	[more]
AT1G79650.2	1.1e-129	66.41	Rad23 UV excision repair protein family	[more]
AT1G79650.3	3.3e-129	68.63	Rad23 UV excision repair protein family	[more]
AT1G79650.4	8.0e-128	64.36	Rad23 UV excision repair protein family	[more]
AT1G16190.1	3.3e-121	62.72	Rad23 UV excision repair protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004806	UV excision repair protein Rad23	PRINTS	PR01839	RAD23PROTEIN	coord: 272..294 score: 59.68 coord: 338..352 score: 65.76 coord: 353..368 score: 62.78 coord: 321..337 score: 62.3
IPR004806	UV excision repair protein Rad23	TIGRFAM	TIGR00601	TIGR00601	coord: 1..370 e-value: 3.3E-110 score: 366.8
IPR015940	Ubiquitin-associated domain	SMART	SM00165	uba_6	coord: 327..364 e-value: 1.3E-7 score: 41.3 coord: 160..200 e-value: 1.2E-6 score: 38.1
IPR015940	Ubiquitin-associated domain	PFAM	PF00627	UBA	coord: 160..198 e-value: 7.5E-16 score: 57.7 coord: 327..362 e-value: 2.6E-11 score: 43.1
IPR015940	Ubiquitin-associated domain	PROSITE	PS50030	UBA	coord: 325..365 score: 14.836119
IPR015940	Ubiquitin-associated domain	PROSITE	PS50030	UBA	coord: 158..201 score: 13.221613
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 1..75 e-value: 4.6E-23 score: 92.6
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 3..76 e-value: 1.3E-16 score: 60.0
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..79 score: 18.802267
None	No IPR available	GENE3D	1.10.8.10		coord: 318..366 e-value: 6.1E-24 score: 85.7
None	No IPR available	GENE3D	3.10.20.90		coord: 1..77 e-value: 2.7E-26 score: 93.2
None	No IPR available	GENE3D	1.10.8.10		coord: 153..203 e-value: 1.0E-22 score: 81.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..112
None	No IPR available	PANTHER	PTHR10621:SF32	UBIQUITIN RECEPTOR RAD23A-RELATED	coord: 1..370
None	No IPR available	PANTHER	PTHR10621	UV EXCISION REPAIR PROTEIN RAD23	coord: 1..370
None	No IPR available	CDD	cd01805	Ubl_Rad23	coord: 1..74 e-value: 4.07065E-30 score: 108.413
None	No IPR available	CDD	cd14379	UBA1_Rad23_plant	coord: 154..203 e-value: 3.21587E-31 score: 110.78
IPR036353	XPC-binding domain superfamily	GENE3D	1.10.10.540		coord: 270..302 e-value: 1.5E-10 score: 42.5
IPR036353	XPC-binding domain superfamily	SUPERFAMILY	101238	XPC-binding domain	coord: 262..308
IPR015360	XPC-binding domain	PFAM	PF09280	XPC-binding	coord: 270..301 e-value: 2.7E-9 score: 36.6
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..83
IPR009060	UBA-like superfamily	SUPERFAMILY	46934	UBA-like	coord: 309..369
IPR009060	UBA-like superfamily	SUPERFAMILY	46934	UBA-like	coord: 157..208

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10019470	HG10019470	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10019470.1-cds	HG10019470.1-cds-Chr04:22146309..22146425	CDS
HG10019470.1-cds	HG10019470.1-cds-Chr04:22146528..22146606	CDS
HG10019470.1-cds	HG10019470.1-cds-Chr04:22147300..22147409	CDS
HG10019470.1-cds	HG10019470.1-cds-Chr04:22147912..22147986	CDS
HG10019470.1-cds	HG10019470.1-cds-Chr04:22148074..22148208	CDS
HG10019470.1-cds	HG10019470.1-cds-Chr04:22148283..22148460	CDS
HG10019470.1-cds	HG10019470.1-cds-Chr04:22149171..22149215	CDS
HG10019470.1-cds	HG10019470.1-cds-Chr04:22149306..22149415	CDS
HG10019470.1-cds	HG10019470.1-cds-Chr04:22149491..22149529	CDS
HG10019470.1-cds	HG10019470.1-cds-Chr04:22149658..22149819	CDS
HG10019470.1-cds	HG10019470.1-cds-Chr04:22150764..22150829	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10019470.1	HG10019470.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0031593	polyubiquitin modification-dependent protein binding
molecular_function	GO:0070628	proteasome binding
molecular_function	GO:0043130	ubiquitin binding