HG10019354.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019354.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Transmembrane protein, putative
Location	Chr04: 20777576 .. 20778180 (-)
Sequence length	279
RNA-Seq Expression	HG10019354.1
Synteny	HG10019354.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCACATCTTCTTCTTCGTCTTCCACTCCACGACCAAGGATTTCCATGGCGCAGCTGGTAAAAGATCATGGATTCCCTTGCTCTGTTCTCTCTTGTTTTATCTGGGTATCATTTGGGCGGTGAGATACAAGACAAGACGAATGTTGAAGCCCATTTGGAGAAGCTGCTGGAAAGGGAAAAAGAAGACAAGATTTGCTGTCAAAGTATGTTGATGAATTAAAGAGGAAATGGGTTGAATTTGATTTGCTAAAGGAGGTGGATGCGCTAAGGAGGGCAAAGAGTCCGAGGGTTGAAGCTAAGGATGTGAGAAAATGGTCTTCAAGGGATTTCATTACTCTATTTTTCTTCTCTGTTTCTTTGGATTATTAAGGTTGTTTCAGTATTTTATTATTTTGGTGAGTATTATTTGGATAACAATTTTAACTTAAAGAAAAAAAAAAAGAAAAATCAAACATCTTATTCATTTAAACACAAAATCTATCGTGTGAGTAATCTTCAAATCATGGTAATGGTATTGGTGATGGCGAAGATAGCGGTGGAAGCATCGCCAATGAGAGAAGAGAAGGGAGTGAGGAGGCAAGGCAACGAATATCGGAGGTAG

mRNA sequence

ATGTTTCACATCTTCTTCTTCGTCTTCCACTCCACGACCAAGGATTTCCATGGCGCAGCTGGTAAAAGATCATGGATTCCCTTGCTCTGTTCTCTCTTGTTTTATCTGGGTATCATTTGGGCGGTGAGATACAAGACAAGACGAATGTTGAAGCCCATTTGGAGAAGCTGCTGGAAAGGGAAAAAGAAGACAAGATTTGCTGTCAAAATAGCGGTGGAAGCATCGCCAATGAGAGAAGAGAAGGGAGTGAGGAGGCAAGGCAACGAATATCGGAGGTAG

Coding sequence (CDS)

ATGTTTCACATCTTCTTCTTCGTCTTCCACTCCACGACCAAGGATTTCCATGGCGCAGCTGGTAAAAGATCATGGATTCCCTTGCTCTGTTCTCTCTTGTTTTATCTGGGTATCATTTGGGCGGTGAGATACAAGACAAGACGAATGTTGAAGCCCATTTGGAGAAGCTGCTGGAAAGGGAAAAAGAAGACAAGATTTGCTGTCAAAATAGCGGTGGAAGCATCGCCAATGAGAGAAGAGAAGGGAGTGAGGAGGCAAGGCAACGAATATCGGAGGTAG

Protein sequence

MFHIFFFVFHSTTKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTRFAVKIAVEASPMREEKGVRRQGNEYRR

Homology

[Close]

BLAST of HG10019354.1 vs. NCBI nr
Match: XP_008447121.1 (PREDICTED: uncharacterized protein LOC103489644 [Cucumis melo] >KAA0051100.1 putative transmembrane protein [Cucumis melo var. makuwa] >TYK02689.1 putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 6.4e-12
Identity = 41/55 (74.55%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1   MFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKT 47
           M HIFFFVFHST         TKDFHG A KRSWIP LCSLLF LGIIWAVRYKT
Sbjct: 63  MLHIFFFVFHSTAILLLFNASTKDFHGVACKRSWIPSLCSLLFSLGIIWAVRYKT 117

[Close]

BLAST of HG10019354.1 vs. NCBI nr
Match: XP_038888007.1 (uncharacterized protein LOC120077946 [Benincasa hispida])

HSP 1 Score: 80.9 bits (198), Expect = 6.4e-12
Identity = 41/55 (74.55%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1   MFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKT 47
           M HIFFFVFHST         TKDFHG A KRSWIP LCSLLF LGIIWAVRYKT
Sbjct: 62  MLHIFFFVFHSTAILLLFNASTKDFHGVACKRSWIPSLCSLLFSLGIIWAVRYKT 116

[Close]

BLAST of HG10019354.1 vs. NCBI nr
Match: XP_004139828.2 (uncharacterized protein LOC101213346 [Cucumis sativus] >KGN44273.1 hypothetical protein Csa_016839 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 6.4e-12
Identity = 41/55 (74.55%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1   MFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKT 47
           M HIFFFVFHST         TKDFHG A KRSWIP LCSLLF LGIIWAVRYKT
Sbjct: 63  MLHIFFFVFHSTAILLLFNASTKDFHGVACKRSWIPSLCSLLFSLGIIWAVRYKT 117

[Close]

BLAST of HG10019354.1 vs. NCBI nr
Match: KAG7012062.1 (hypothetical protein SDJN02_26970, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 78.6 bits (192), Expect = 3.2e-11
Identity = 39/55 (70.91%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 1   MFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKT 47
           M HIFFF+FHST         TKDFHG A  RSWIP LCSLLF LGIIWAVRYKT
Sbjct: 52  MLHIFFFIFHSTAVLLLFNASTKDFHGVACNRSWIPSLCSLLFSLGIIWAVRYKT 106

[Close]

BLAST of HG10019354.1 vs. NCBI nr
Match: XP_022968874.1 (uncharacterized protein LOC111468053 [Cucurbita maxima])

HSP 1 Score: 78.6 bits (192), Expect = 3.2e-11
Identity = 39/55 (70.91%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 1   MFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKT 47
           M HIFFF+FHST         TKDFHG A  RSWIP LCSLLF LGIIWAVRYKT
Sbjct: 62  MLHIFFFIFHSTAVLLLFNASTKDFHGVACNRSWIPSLCSLLFSLGIIWAVRYKT 116

[Close]

BLAST of HG10019354.1 vs. ExPASy TrEMBL
Match: A0A5A7U7C4 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1161G00150 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.1e-12
Identity = 41/55 (74.55%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1   MFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKT 47
           M HIFFFVFHST         TKDFHG A KRSWIP LCSLLF LGIIWAVRYKT
Sbjct: 63  MLHIFFFVFHSTAILLLFNASTKDFHGVACKRSWIPSLCSLLFSLGIIWAVRYKT 117

[Close]

BLAST of HG10019354.1 vs. ExPASy TrEMBL
Match: A0A0A0K424 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G237880 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.1e-12
Identity = 41/55 (74.55%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1   MFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKT 47
           M HIFFFVFHST         TKDFHG A KRSWIP LCSLLF LGIIWAVRYKT
Sbjct: 63  MLHIFFFVFHSTAILLLFNASTKDFHGVACKRSWIPSLCSLLFSLGIIWAVRYKT 117

[Close]

BLAST of HG10019354.1 vs. ExPASy TrEMBL
Match: A0A1S3BHA3 (uncharacterized protein LOC103489644 OS=Cucumis melo OX=3656 GN=LOC103489644 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.1e-12
Identity = 41/55 (74.55%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1   MFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKT 47
           M HIFFFVFHST         TKDFHG A KRSWIP LCSLLF LGIIWAVRYKT
Sbjct: 63  MLHIFFFVFHSTAILLLFNASTKDFHGVACKRSWIPSLCSLLFSLGIIWAVRYKT 117

[Close]

BLAST of HG10019354.1 vs. ExPASy TrEMBL
Match: A0A6J1I0X4 (uncharacterized protein LOC111468053 OS=Cucurbita maxima OX=3661 GN=LOC111468053 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 39/55 (70.91%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 1   MFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKT 47
           M HIFFF+FHST         TKDFHG A  RSWIP LCSLLF LGIIWAVRYKT
Sbjct: 62  MLHIFFFIFHSTAVLLLFNASTKDFHGVACNRSWIPSLCSLLFSLGIIWAVRYKT 116

[Close]

BLAST of HG10019354.1 vs. ExPASy TrEMBL
Match: A0A6J1GKU6 (uncharacterized protein LOC111454873 OS=Cucurbita moschata OX=3662 GN=LOC111454873 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 39/55 (70.91%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 1   MFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKT 47
           M HIFFF+FHST         TKDFHG A  RSWIP LCSLLF LGIIWAVRYKT
Sbjct: 62  MLHIFFFIFHSTAVLLLFNASTKDFHGVACNRSWIPSLCSLLFSLGIIWAVRYKT 116

[Close]

BLAST of HG10019354.1 vs. TAIR 10
Match: AT3G12870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 3.0e-07
Identity = 37/114 (32.46%), Postives = 55/114 (48.25%), Query Frame = 0


Query: 3   HIFFFVFH------------STTKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKT---- 62
           +IFFF+FH            S++     +A KRSWIP LC+LL  LGIIWAVRYK+    
Sbjct: 65  YIFFFLFHSISLLLLFHASSSSSSSASSSACKRSWIPSLCALLSSLGIIWAVRYKSEVES 124

Query: 63  --RRMLK------PIWRSCWKGKKKTRFAVKIAVEASPMREEKGVRRQGNEYRR 93
              ++L+       + R C +  KK      +  E   +R  K +R +    ++
Sbjct: 125 HLEKLLEREKEDAKLLRKCVEELKKKGIEFDLLKEVDALRRAKSLRVESKPVKK 178

The following BLAST results are available for this feature:

BLAST of HG10019354.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447121.1	6.4e-12	74.55	PREDICTED: uncharacterized protein LOC103489644 [Cucumis melo] >KAA0051100.1 put...	[more]
XP_038888007.1	6.4e-12	74.55	uncharacterized protein LOC120077946 [Benincasa hispida]	[more]
XP_004139828.2	6.4e-12	74.55	uncharacterized protein LOC101213346 [Cucumis sativus] >KGN44273.1 hypothetical ...	[more]
KAG7012062.1	3.2e-11	70.91	hypothetical protein SDJN02_26970, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022968874.1	3.2e-11	70.91	uncharacterized protein LOC111468053 [Cucurbita maxima]	[more]

BLAST of HG10019354.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10019354.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U7C4	3.1e-12	74.55	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0K424	3.1e-12	74.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G237880 PE=4 SV=1	[more]
A0A1S3BHA3	3.1e-12	74.55	uncharacterized protein LOC103489644 OS=Cucumis melo OX=3656 GN=LOC103489644 PE=...	[more]
A0A6J1I0X4	1.5e-11	70.91	uncharacterized protein LOC111468053 OS=Cucurbita maxima OX=3661 GN=LOC111468053...	[more]
A0A6J1GKU6	1.5e-11	70.91	uncharacterized protein LOC111454873 OS=Cucurbita moschata OX=3662 GN=LOC1114548...	[more]

BLAST of HG10019354.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12870.1	3.0e-07	32.46	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10019354	HG10019354	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10019354.1-cds	HG10019354.1-cds-Chr04:20777576..20777647	CDS
HG10019354.1-cds	HG10019354.1-cds-Chr04:20777974..20778180	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10019354.1	HG10019354.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane