HG10018508.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10018508.1
TypemRNA
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr04: 4775188 .. 4775535 (-)
Sequence length348
RNA-Seq ExpressionHG10018508.1
SyntenyHG10018508.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCAAGCTTTAGAGCAAGAGGCCTTGTGAAGGCCATGTTGGGTCCTCTCCATGGGGAAGCTATGGCTGGCAGCAGAAAGACAAAGACAAAGCCAACCACGACGATCACGTCCAACGCTTCGTCGTGTTCGAGTCATGTTTCGTTTATGGTTCATCACCAAGAAAGGGGAATGATAGCTCCGTCGAACCATCGAGTTGTTCATGATCAATCCATGAATAATGTTCACGAGGCGAACTTTTGGAACCCTTACGGTGTCGGTGTGGATGAACATATCGATCGGAAGGCGGCCATGTACATATCATCGGTGCAAGAACGCTTTAAACTTGAGGGCTTAATCAATTGA

mRNA sequence

ATGGATTCAAGCTTTAGAGCAAGAGGCCTTGTGAAGGCCATGTTGGGTCCTCTCCATGGGGAAGCTATGGCTGGCAGCAGAAAGACAAAGACAAAGCCAACCACGACGATCACGTCCAACGCTTCGTCGTGTTCGAGTCATGTTTCGTTTATGGTTCATCACCAAGAAAGGGGAATGATAGCTCCGTCGAACCATCGAGTTGTTCATGATCAATCCATGAATAATGTTCACGAGGCGAACTTTTGGAACCCTTACGGTGTCGGTGTGGATGAACATATCGATCGGAAGGCGGCCATGTACATATCATCGGTGCAAGAACGCTTTAAACTTGAGGGCTTAATCAATTGA

Coding sequence (CDS)

ATGGATTCAAGCTTTAGAGCAAGAGGCCTTGTGAAGGCCATGTTGGGTCCTCTCCATGGGGAAGCTATGGCTGGCAGCAGAAAGACAAAGACAAAGCCAACCACGACGATCACGTCCAACGCTTCGTCGTGTTCGAGTCATGTTTCGTTTATGGTTCATCACCAAGAAAGGGGAATGATAGCTCCGTCGAACCATCGAGTTGTTCATGATCAATCCATGAATAATGTTCACGAGGCGAACTTTTGGAACCCTTACGGTGTCGGTGTGGATGAACATATCGATCGGAAGGCGGCCATGTACATATCATCGGTGCAAGAACGCTTTAAACTTGAGGGCTTAATCAATTGA

Protein sequence

MDSSFRARGLVKAMLGPLHGEAMAGSRKTKTKPTTTITSNASSCSSHVSFMVHHQERGMIAPSNHRVVHDQSMNNVHEANFWNPYGVGVDEHIDRKAAMYISSVQERFKLEGLIN
Homology
BLAST of HG10018508.1 vs. NCBI nr
Match: KAA0056544.1 (hypothetical protein E6C27_scaffold288G00460 [Cucumis melo var. makuwa] >TYK02718.1 hypothetical protein E5676_scaffold1154G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 2.0e-39
Identity = 92/116 (79.31%), Postives = 97/116 (83.62%), Query Frame = 0

Query: 1   MDSSFRARGLVKAMLGPLHGEAMAGSRKTKTKPTTTITSNASSCSSHVSFMVHHQERGMI 60
           MDS  RARGLVK M+GPLHGEAM GSR  K  PT   TSNAS CSSH+SF VHHQER M+
Sbjct: 1   MDSRCRARGLVKGMVGPLHGEAMTGSR--KMAPT---TSNASLCSSHISFTVHHQERVMM 60

Query: 61  APSNHRV-VHDQSMNNVHEANFWNPYGVGVDEHIDRKAAMYISSVQERFKLEGLIN 116
           APSN RV VHDQ+MNNVHEA  WN YGVGVDEHIDRKAA+YISSVQERFKLEGLIN
Sbjct: 61  APSNRRVLVHDQAMNNVHEATLWNLYGVGVDEHIDRKAALYISSVQERFKLEGLIN 111

BLAST of HG10018508.1 vs. NCBI nr
Match: KAE8652260.1 (hypothetical protein Csa_022307 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 2.0e-39
Identity = 87/109 (79.82%), Postives = 95/109 (87.16%), Query Frame = 0

Query: 7   ARGLVKAMLGPLHGEAMAGSRKTKTKPTTTITSNASSCSSHVSFMVHHQERGMIAPSNHR 66
           ARGLVK M+GPLHGEAM GSR +K  PT   TSNAS CSSH+SF VHHQER ++APSNHR
Sbjct: 122 ARGLVKGMVGPLHGEAMTGSR-SKITPT---TSNASLCSSHISFTVHHQERALMAPSNHR 181

Query: 67  VVHDQSMNNVHEANFWNPYGVGVDEHIDRKAAMYISSVQERFKLEGLIN 116
           VVHDQ+MNNVHEA  WN YGVGVDEHIDRKA++YISSVQERFKLEGLIN
Sbjct: 182 VVHDQAMNNVHEATLWNLYGVGVDEHIDRKASLYISSVQERFKLEGLIN 226

BLAST of HG10018508.1 vs. NCBI nr
Match: KAG6578363.1 (hypothetical protein SDJN03_22811, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.4 bits (363), Expect = 5.9e-31
Identity = 79/117 (67.52%), Postives = 83/117 (70.94%), Query Frame = 0

Query: 1   MDSSFRARGLVKAMLGPLHGEAMAGSRKTKTKPTTTITSNASSCSSHVSFMVHHQERGMI 60
           MD+  RARGLVK MLGPLHGE MA                  SCSSHVSFMVH QER  +
Sbjct: 1   MDARCRARGLVKGMLGPLHGEGMA------------------SCSSHVSFMVHRQERAAM 60

Query: 61  APSNHRVVHDQSMNNVHEANFWNPYGVG--VDEHIDRKAAMYISSVQERFKLEGLIN 116
            PSN RVVHDQ+MNNV EANF NP G G   DEHIDRKAAMYISSVQERF+LEGLIN
Sbjct: 61  PPSNQRVVHDQAMNNVQEANFRNPQGGGGFADEHIDRKAAMYISSVQERFRLEGLIN 99

BLAST of HG10018508.1 vs. NCBI nr
Match: KAG6602687.1 (hypothetical protein SDJN03_07920, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133.7 bits (335), Expect = 1.0e-27
Identity = 80/116 (68.97%), Postives = 85/116 (73.28%), Query Frame = 0

Query: 1   MDSSFR-ARGLVKAMLGPLHGEAMAGSRKTKTKPTTTITSNASSCSSHVSFMVHHQERGM 60
           MDS  R AR LV       HGEAMA SR   TKPT T+  NASSCS HVSFMVHHQER  
Sbjct: 1   MDSRCRSARPLVP------HGEAMASSR--NTKPTATLL-NASSCSCHVSFMVHHQERAK 60

Query: 61  IAPSNHRVVHDQSMNNVHEANFWNPYGVGVDEHIDRKAAMYISSVQERFKLEGLIN 116
           +A SN RVVH+    NVHEA FWN YGV VDEHIDRKAAMYISSVQERF+LEG I+
Sbjct: 61  MASSNQRVVHEAM--NVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGSIS 105

BLAST of HG10018508.1 vs. NCBI nr
Match: XP_007031912.2 (PREDICTED: uncharacterized protein LOC18601044 [Theobroma cacao])

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-05
Identity = 41/109 (37.61%), Postives = 57/109 (52.29%), Query Frame = 0

Query: 3   SSFRARGLVKAMLGPLHGEAMAGSRKTKTKPTTTITSNASSCSSHVSFMVHHQERGMIAP 62
           S+ + RG +K  L P +  AM        + TT +  N +S ++ VSF V HQ+  +  P
Sbjct: 5   SNRKRRGFIKGKLAPFYRAAM--------QYTTKVMPNQTSTTASVSFRV-HQDYMVSQP 64

Query: 63  SNHRVVHDQSMNNVHEANFWNPYGVGVDEHIDRKAAMYISSVQERFKLE 112
                +     N  + +   N +GV  DE +D KAA YISSVQERFKLE
Sbjct: 65  KQVSFILPADKNRENLSQIDNFFGVAGDESVDIKAASYISSVQERFKLE 104

BLAST of HG10018508.1 vs. ExPASy TrEMBL
Match: A0A0A0LQT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406070 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.2e-42
Identity = 91/115 (79.13%), Postives = 99/115 (86.09%), Query Frame = 0

Query: 1   MDSSFRARGLVKAMLGPLHGEAMAGSRKTKTKPTTTITSNASSCSSHVSFMVHHQERGMI 60
           MDS  RARGLVK M+GPLHGEAM GSR +K  PT   TSNAS CSSH+SF VHHQER ++
Sbjct: 1   MDSRCRARGLVKGMVGPLHGEAMTGSR-SKITPT---TSNASLCSSHISFTVHHQERALM 60

Query: 61  APSNHRVVHDQSMNNVHEANFWNPYGVGVDEHIDRKAAMYISSVQERFKLEGLIN 116
           APSNHRVVHDQ+MNNVHEA  WN YGVGVDEHIDRKA++YISSVQERFKLEGLIN
Sbjct: 61  APSNHRVVHDQAMNNVHEATLWNLYGVGVDEHIDRKASLYISSVQERFKLEGLIN 111

BLAST of HG10018508.1 vs. ExPASy TrEMBL
Match: A0A5A7UMY1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154G00160 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.8e-40
Identity = 92/116 (79.31%), Postives = 97/116 (83.62%), Query Frame = 0

Query: 1   MDSSFRARGLVKAMLGPLHGEAMAGSRKTKTKPTTTITSNASSCSSHVSFMVHHQERGMI 60
           MDS  RARGLVK M+GPLHGEAM GSR  K  PT   TSNAS CSSH+SF VHHQER M+
Sbjct: 1   MDSRCRARGLVKGMVGPLHGEAMTGSR--KMAPT---TSNASLCSSHISFTVHHQERVMM 60

Query: 61  APSNHRV-VHDQSMNNVHEANFWNPYGVGVDEHIDRKAAMYISSVQERFKLEGLIN 116
           APSN RV VHDQ+MNNVHEA  WN YGVGVDEHIDRKAA+YISSVQERFKLEGLIN
Sbjct: 61  APSNRRVLVHDQAMNNVHEATLWNLYGVGVDEHIDRKAALYISSVQERFKLEGLIN 111

BLAST of HG10018508.1 vs. ExPASy TrEMBL
Match: V4TIP5 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017736mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-05
Identity = 44/122 (36.07%), Postives = 61/122 (50.00%), Query Frame = 0

Query: 1   MDSSFRARGLVKAMLGPLHGEAMAGSRKTKTKPTTTITSNASS-CSSHVSFMVHH----- 60
           M++S + RG +K  L PL+  A + +  T       I S+ SS  ++ V ++VH      
Sbjct: 1   METSRKGRGFIKGKLMPLYSGAKSSASSTVQYSNNAIKSSQSSPAAATVGYVVHQDYLIA 60

Query: 61  ---QERGMIAPSNHRVVHDQSMNNVHEANFWNPYGVGVDEHIDRKAAMYISSVQERFKLE 114
              Q    I PS     HD ++N  H     +   +  DE +D KAA YISSVQERFKLE
Sbjct: 61  QPKQNVSFIVPS---APHDNNVNRDHHQKLSHFETLFGDESVDIKAASYISSVQERFKLE 119

BLAST of HG10018508.1 vs. ExPASy TrEMBL
Match: A0A2I4E7Q1 (uncharacterized protein LOC108987043 OS=Juglans regia OX=51240 GN=LOC108987043 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-05
Identity = 47/125 (37.60%), Postives = 63/125 (50.40%), Query Frame = 0

Query: 1   MDSSFRARGLVKAMLGPLHGEAMAGSRKTKTKPTTT-------ITSNASSCSSHVSFMVH 60
           M+++ + RG VK  L P H        ++ TKP++T       I  N SS S+     V 
Sbjct: 1   MEANRKLRGFVKGKLMPFH--------RSATKPSSTVQYISSKIKPNQSSPSTAPLGFVV 60

Query: 61  HQERGMIAPSNHRVVH----DQSMNN---VHEANFWNPYGVGVDEHIDRKAAMYISSVQE 112
           HQ+  +  P    V      D +M N   V  + + N YG+  DE +D KAA YISSVQE
Sbjct: 61  HQDYAVAQPKQKAVSFIVPPDHNMINRDLVVLSKYENLYGLAADESVDMKAATYISSVQE 117

BLAST of HG10018508.1 vs. ExPASy TrEMBL
Match: A0A2H5Q016 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_183620 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-05
Identity = 44/122 (36.07%), Postives = 61/122 (50.00%), Query Frame = 0

Query: 1   MDSSFRARGLVKAMLGPLHGEAMAGSRKTKTKPTTTITSNASS-CSSHVSFMVHH----- 60
           M++S + RG +K  L PL+  A + +  T       I S+ SS  ++ V ++VH      
Sbjct: 1   METSRKGRGFIKGKLMPLYSGAKSSASSTVQYSNNAIKSSQSSPAAATVGYVVHQDYLIA 60

Query: 61  ---QERGMIAPSNHRVVHDQSMNNVHEANFWNPYGVGVDEHIDRKAAMYISSVQERFKLE 114
              Q    I PS     HD ++N  H     +   +  DE +D KAA YISSVQERFKLE
Sbjct: 61  QPKQNVSFIVPS---APHDNNVNRDHHQKLSHFETLFGDESVDIKAASYISSVQERFKLE 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0056544.12.0e-3979.31hypothetical protein E6C27_scaffold288G00460 [Cucumis melo var. makuwa] >TYK0271... [more]
KAE8652260.12.0e-3979.82hypothetical protein Csa_022307 [Cucumis sativus][more]
KAG6578363.15.9e-3167.52hypothetical protein SDJN03_22811, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602687.11.0e-2768.97hypothetical protein SDJN03_07920, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_007031912.22.5e-0537.61PREDICTED: uncharacterized protein LOC18601044 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LQT56.2e-4279.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406070 PE=4 SV=1[more]
A0A5A7UMY19.8e-4079.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
V4TIP51.6e-0536.07Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017736mg PE=4 ... [more]
A0A2I4E7Q11.6e-0537.60uncharacterized protein LOC108987043 OS=Juglans regia OX=51240 GN=LOC108987043 P... [more]
A0A2H5Q0161.6e-0536.07Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_183620 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..40
NoneNo IPR availablePANTHERPTHR36030FAMILY NOT NAMEDcoord: 1..111
NoneNo IPR availablePANTHERPTHR36030:SF1SUBFAMILY NOT NAMEDcoord: 1..111

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
HG10018508HG10018508gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
HG10018508.1-cdsHG10018508.1-cds-Chr04:4775188..4775535CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
HG10018508.1HG10018508.1-proteinpolypeptide