Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGGGAGTAAGAAGAAGGCGATATTCAGAGCCCCCAACCGACATGTCGTCGTGGTCAGGCTGAGCCGGAAACAGAGGATTGAGAACAGTAAGGCGTTGTCCGACGACGATGGTATCAGTTGGAACGTGAAAGGACTCCCAGAGAGAAACGTTGGAATGGTCGAGGAGGAGGAGGTTGCCGGAGTCGAGGAGGAGCATGGCGGCGACAGGGGAGGGGAGAGGAGGGGTGGACCAGACGAGGAGACCAGAGTCGTCGGAGAGAGAGAGGCCGGCGGGGGAGAGAGTGAGAAGGCTGGAAGTGGAAACGGGTTTGTTTGGATTGGCAGACCAAATGATGGAGTTGGATTGGACATGGATGATGAGGAAGTAGTAGAGAGAAGAGTGGGATTTGGAATTAGTGATTGA mRNA sequence ATGGGGAGTAAGAAGAAGGCGATATTCAGAGCCCCCAACCGACATGTCGTCGTGGTCAGGCTGAGCCGGAAACAGAGGATTGAGAACAGTAAGGCGTTGTCCGACGACGATGGTATCAGTTGGAACGTGAAAGGACTCCCAGAGAGAAACGTTGGAATGGTCGAGGAGGAGGAGGTTGCCGGAGTCGAGGAGGAGCATGGCGGCGACAGGGGAGGGGAGAGGAGGGGTGGACCAGACGAGGAGACCAGAGTCGTCGGAGAGAGAGAGGCCGGCGGGGGAGAGAGTGAGAAGGCTGGAAGTGGAAACGGGTTTGTTTGGATTGGCAGACCAAATGATGGAGTTGGATTGGACATGGATGATGAGGAAGTAGTAGAGAGAAGAGTGGGATTTGGAATTAGTGATTGA Coding sequence (CDS) ATGGGGAGTAAGAAGAAGGCGATATTCAGAGCCCCCAACCGACATGTCGTCGTGGTCAGGCTGAGCCGGAAACAGAGGATTGAGAACAGTAAGGCGTTGTCCGACGACGATGGTATCAGTTGGAACGTGAAAGGACTCCCAGAGAGAAACGTTGGAATGGTCGAGGAGGAGGAGGTTGCCGGAGTCGAGGAGGAGCATGGCGGCGACAGGGGAGGGGAGAGGAGGGGTGGACCAGACGAGGAGACCAGAGTCGTCGGAGAGAGAGAGGCCGGCGGGGGAGAGAGTGAGAAGGCTGGAAGTGGAAACGGGTTTGTTTGGATTGGCAGACCAAATGATGGAGTTGGATTGGACATGGATGATGAGGAAGTAGTAGAGAGAAGAGTGGGATTTGGAATTAGTGATTGA Protein sequence MGSKKKAIFRAPNRHVVVVRLSRKQRIENSKALSDDDGISWNVKGLPERNVGMVEEEEVAGVEEEHGGDRGGERRGGPDEETRVVGEREAGGGESEKAGSGNGFVWIGRPNDGVGLDMDDEEVVERRVGFGISD
Homology
BLAST of HG10018058.1 vs. ExPASy TrEMBL
Match: A0A0A0L0A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337900 PE=4 SV=1) HSP 1 Score: 153.3 bits (386), Expect = 7.2e-34 Identity = 77/92 (83.70%), Postives = 84/92 (91.30%), Query Frame = 0
Query: 43 VKGLPERNVGMVEEEEVAGVEEEHGGDRGGERRGGPDEETRVVGEREAGGGESEKAGSGN 102
+KG PER+VG+VEEEEVAGV+EEHGGDRGGERR GPDEE RVVGEREAGGGESEKAGSGN
Sbjct: 1 MKGFPERDVGVVEEEEVAGVKEEHGGDRGGERRSGPDEEARVVGEREAGGGESEKAGSGN 60
Query: 103 GFVWIGRPNDGVGLDMDDEEVVERRVGFGISD 135
GFVWI RPN+GVGLDMDDEE V+ +G GISD
Sbjct: 61 GFVWISRPNNGVGLDMDDEEEVKGSMGIGISD 92
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L0A1 | 7.2e-34 | 83.70 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337900 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 57..106 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 63..94 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| HG10018058 | HG10018058 | gene |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| HG10018058.1-cds | HG10018058.1-cds-Chr03:30090224..30090628 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| HG10018058.1 | HG10018058.1-protein | polypeptide |
|
