HG10018058 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10018058
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr03: 30090224 .. 30090628 (+)
RNA-Seq Expression	HG10018058
Synteny	HG10018058

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGTAAGAAGAAGGCGATATTCAGAGCCCCCAACCGACATGTCGTCGTGGTCAGGCTGAGCCGGAAACAGAGGATTGAGAACAGTAAGGCGTTGTCCGACGACGATGGTATCAGTTGGAACGTGAAAGGACTCCCAGAGAGAAACGTTGGAATGGTCGAGGAGGAGGAGGTTGCCGGAGTCGAGGAGGAGCATGGCGGCGACAGGGGAGGGGAGAGGAGGGGTGGACCAGACGAGGAGACCAGAGTCGTCGGAGAGAGAGAGGCCGGCGGGGGAGAGAGTGAGAAGGCTGGAAGTGGAAACGGGTTTGTTTGGATTGGCAGACCAAATGATGGAGTTGGATTGGACATGGATGATGAGGAAGTAGTAGAGAGAAGAGTGGGATTTGGAATTAGTGATTGA

mRNA sequence

ATGGGGAGTAAGAAGAAGGCGATATTCAGAGCCCCCAACCGACATGTCGTCGTGGTCAGGCTGAGCCGGAAACAGAGGATTGAGAACAGTAAGGCGTTGTCCGACGACGATGGTATCAGTTGGAACGTGAAAGGACTCCCAGAGAGAAACGTTGGAATGGTCGAGGAGGAGGAGGTTGCCGGAGTCGAGGAGGAGCATGGCGGCGACAGGGGAGGGGAGAGGAGGGGTGGACCAGACGAGGAGACCAGAGTCGTCGGAGAGAGAGAGGCCGGCGGGGGAGAGAGTGAGAAGGCTGGAAGTGGAAACGGGTTTGTTTGGATTGGCAGACCAAATGATGGAGTTGGATTGGACATGGATGATGAGGAAGTAGTAGAGAGAAGAGTGGGATTTGGAATTAGTGATTGA

Coding sequence (CDS)

ATGGGGAGTAAGAAGAAGGCGATATTCAGAGCCCCCAACCGACATGTCGTCGTGGTCAGGCTGAGCCGGAAACAGAGGATTGAGAACAGTAAGGCGTTGTCCGACGACGATGGTATCAGTTGGAACGTGAAAGGACTCCCAGAGAGAAACGTTGGAATGGTCGAGGAGGAGGAGGTTGCCGGAGTCGAGGAGGAGCATGGCGGCGACAGGGGAGGGGAGAGGAGGGGTGGACCAGACGAGGAGACCAGAGTCGTCGGAGAGAGAGAGGCCGGCGGGGGAGAGAGTGAGAAGGCTGGAAGTGGAAACGGGTTTGTTTGGATTGGCAGACCAAATGATGGAGTTGGATTGGACATGGATGATGAGGAAGTAGTAGAGAGAAGAGTGGGATTTGGAATTAGTGATTGA

Protein sequence

MGSKKKAIFRAPNRHVVVVRLSRKQRIENSKALSDDDGISWNVKGLPERNVGMVEEEEVAGVEEEHGGDRGGERRGGPDEETRVVGEREAGGGESEKAGSGNGFVWIGRPNDGVGLDMDDEEVVERRVGFGISD

Homology

[Close]

BLAST of HG10018058 vs. ExPASy TrEMBL
Match: A0A0A0L0A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337900 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 7.2e-34
Identity = 77/92 (83.70%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 43  VKGLPERNVGMVEEEEVAGVEEEHGGDRGGERRGGPDEETRVVGEREAGGGESEKAGSGN 102
           +KG PER+VG+VEEEEVAGV+EEHGGDRGGERR GPDEE RVVGEREAGGGESEKAGSGN
Sbjct: 1   MKGFPERDVGVVEEEEVAGVKEEHGGDRGGERRSGPDEEARVVGEREAGGGESEKAGSGN 60

Query: 103 GFVWIGRPNDGVGLDMDDEEVVERRVGFGISD 135
           GFVWI RPN+GVGLDMDDEE V+  +G GISD
Sbjct: 61  GFVWISRPNNGVGLDMDDEEEVKGSMGIGISD 92

The following BLAST results are available for this feature:

BLAST of HG10018058 vs.


Match Name	E-value	Identity	Description

BLAST of HG10018058 vs.


Match Name	E-value	Identity	Description

BLAST of HG10018058 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0A1	7.2e-34	83.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337900 PE=4 SV=1	[more]

BLAST of HG10018058 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10018058.1	HG10018058.1	mRNA