HG10017594.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGATGGATGAGGTAAGTGCTCTAAAAACTCAATTGGTTTTTCTTACTAATGCTTTGTCTAAATTGTCTCAAGGAGGCCAAACTCAAGCAAGTCTGCCTTCTATAGCATCTCTAGCGGCAATGGCAAGTCAAAACGAGCAAGGTGGCTAGAGACGGCCAACTATGTAGATAGAGGACAATTTAGAGGCCAACAACAATATCTCACTCACTACCATCCCAACTTGAGGAATCATGAAATTTTCTCTTATGCTAACAACAAGAATGTGTTGCAAGCACCTCAGGGTTTCAATGGTTTGGGCAATGCAAAGATATCATCTTTGGAGGATTTAATGATTGATTTTGTCAAAGAATCAAGGTCAAGGACTACCACATTAGAGAACTCGGTACAAACAATAGCAAGCACCGTACAAAGTCAAGGTAAGGCAATTCAAAGCTTGGAAGTTCAAATTAGTCAAATTGCCATCTCCATCCACACAATGCAAAAAGAGAAATGTCCAAGTTGCCTGGAAAAAAACCCTAAAGAGGAGTGCAAGGCTATCTCTCCAAAGTGGCAGGGAGTTGAACAAGCATGTGGAGATGGATGA ATGAGATGGATGAGGAGGCCAAACTCAAGCAAGTCTGCCTTCTATAGCATCTCTAGCGGCAATGGCAAGTCAAAACGAGCAAGGTGGCTAGAGACGGCCAACTATGTAGATAGAGGACAATTTAGAGGCCAACAACAATATCTCACTCACTACCATCCCAACTTGAGGAATCATGAAATTTTCTCTTATGCTAACAACAAGAATGTGTTGCAAGCACCTCAGGGTTTCAATGGTTTGGGCAATGCAAAGATATCATCTTTGGAGGATTTAATGATTGATTTTGTCAAAGAATCAAGGTCAAGGACTACCACATTAGAGAACTCGGTACAAACAATAGCAAGCACCGTACAAAGTCAAGGTAAGGCAATTCAAAGCTTGGAAGTTCAAATTAGTCAAATTGCCATCTCCATCCACACAATGCAAAAAGAGAAATGTCCAAGTTGCCTGGAAAAAAACCCTAAAGAGGAGTGCAAGGCTATCTCTCCAAAGTGGCAGGGAGTTGAACAAGCATGTGGAGATGGATGA ATGAGATGGATGAGGAGGCCAAACTCAAGCAAGTCTGCCTTCTATAGCATCTCTAGCGGCAATGGCAAGTCAAAACGAGCAAGGTGGCTAGAGACGGCCAACTATGTAGATAGAGGACAATTTAGAGGCCAACAACAATATCTCACTCACTACCATCCCAACTTGAGGAATCATGAAATTTTCTCTTATGCTAACAACAAGAATGTGTTGCAAGCACCTCAGGGTTTCAATGGTTTGGGCAATGCAAAGATATCATCTTTGGAGGATTTAATGATTGATTTTGTCAAAGAATCAAGGTCAAGGACTACCACATTAGAGAACTCGGTACAAACAATAGCAAGCACCGTACAAAGTCAAGGTAAGGCAATTCAAAGCTTGGAAGTTCAAATTAGTCAAATTGCCATCTCCATCCACACAATGCAAAAAGAGAAATGTCCAAGTTGCCTGGAAAAAAACCCTAAAGAGGAGTGCAAGGCTATCTCTCCAAAGTGGCAGGGAGTTGAACAAGCATGTGGAGATGGATGA MRWMRRPNSSKSAFYSISSGNGKSKRARWLETANYVDRGQFRGQQQYLTHYHPNLRNHEIFSYANNKNVLQAPQGFNGLGNAKISSLEDLMIDFVKESRSRTTTLENSVQTIASTVQSQGKAIQSLEVQISQIAISIHTMQKEKCPSCLEKNPKEECKAISPKWQGVEQACGDG Homology
BLAST of HG10017594.1 vs. NCBI nr
Match: WP_217833153.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]) HSP 1 Score: 201.4 bits (511), Expect = 6.2e-48 Identity = 104/133 (78.20%), Postives = 115/133 (86.47%), Query Frame = 0
BLAST of HG10017594.1 vs. NCBI nr
Match: WP_217833148.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002]) HSP 1 Score: 132.1 bits (331), Expect = 4.6e-27 Identity = 77/121 (63.64%), Postives = 87/121 (71.90%), Query Frame = 0
BLAST of HG10017594.1 vs. NCBI nr
Match: XP_022868533.1 (uncharacterized protein LOC111388104 [Olea europaea var. sylvestris]) HSP 1 Score: 109.0 bits (271), Expect = 4.2e-20 Identity = 64/146 (43.84%), Postives = 90/146 (61.64%), Query Frame = 0
BLAST of HG10017594.1 vs. NCBI nr
Match: XP_022893883.1 (uncharacterized protein LOC111408348 [Olea europaea var. sylvestris]) HSP 1 Score: 107.8 bits (268), Expect = 9.3e-20 Identity = 59/137 (43.07%), Postives = 84/137 (61.31%), Query Frame = 0
BLAST of HG10017594.1 vs. NCBI nr
Match: XP_022883717.1 (uncharacterized protein LOC111400543 [Olea europaea var. sylvestris]) HSP 1 Score: 107.5 bits (267), Expect = 1.2e-19 Identity = 58/137 (42.34%), Postives = 84/137 (61.31%), Query Frame = 0
BLAST of HG10017594.1 vs. ExPASy TrEMBL
Match: A0A2P5BPI6 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_313500 PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 4.7e-17 Identity = 55/113 (48.67%), Postives = 70/113 (61.95%), Query Frame = 0
BLAST of HG10017594.1 vs. ExPASy TrEMBL
Match: A0A2I4FP56 (uncharacterized protein LOC109000837 OS=Juglans regia OX=51240 GN=LOC109000837 PE=4 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 8.8e-16 Identity = 56/148 (37.84%), Postives = 83/148 (56.08%), Query Frame = 0
BLAST of HG10017594.1 vs. ExPASy TrEMBL
Match: A0A6P9DWY0 (uncharacterized protein LOC118344026 OS=Juglans regia OX=51240 GN=LOC118344026 PE=4 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 8.8e-16 Identity = 54/146 (36.99%), Postives = 83/146 (56.85%), Query Frame = 0
BLAST of HG10017594.1 vs. ExPASy TrEMBL
Match: A0A2P5A3N0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_372170 PE=4 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 2.0e-15 Identity = 53/113 (46.90%), Postives = 66/113 (58.41%), Query Frame = 0
BLAST of HG10017594.1 vs. ExPASy TrEMBL
Match: A0A2P5AMA4 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_346970 PE=4 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 2.0e-15 Identity = 59/146 (40.41%), Postives = 79/146 (54.11%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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