Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATGGATGAGGTAAGTGCTCTAAAAACTCAATTGGTTTTTCTTACTAATGCTTTGTCTAAATTGTCTCAAGGAGGCCAAACTCAAGCAAGTCTGCCTTCTATAGCATCTCTAGCGGCAATGGCAAGTCAAAACGAGCAAGGTGGCTAGAGACGGCCAACTATGTAGATAGAGGACAATTTAGAGGCCAACAACAATATCTCACTCACTACCATCCCAACTTGAGGAATCATGAAATTTTCTCTTATGCTAACAACAAGAATGTGTTGCAAGCACCTCAGGGTTTCAATGGTTTGGGCAATGCAAAGATATCATCTTTGGAGGATTTAATGATTGATTTTGTCAAAGAATCAAGGTCAAGGACTACCACATTAGAGAACTCGGTACAAACAATAGCAAGCACCGTACAAAGTCAAGGTAAGGCAATTCAAAGCTTGGAAGTTCAAATTAGTCAAATTGCCATCTCCATCCACACAATGCAAAAAGAGAAATGTCCAAGTTGCCTGGAAAAAAACCCTAAAGAGGAGTGCAAGGCTATCTCTCCAAAGTGGCAGGGAGTTGAACAAGCATGTGGAGATGGATGA
mRNA sequence
ATGAGATGGATGAGGAGGCCAAACTCAAGCAAGTCTGCCTTCTATAGCATCTCTAGCGGCAATGGCAAGTCAAAACGAGCAAGGTGGCTAGAGACGGCCAACTATGTAGATAGAGGACAATTTAGAGGCCAACAACAATATCTCACTCACTACCATCCCAACTTGAGGAATCATGAAATTTTCTCTTATGCTAACAACAAGAATGTGTTGCAAGCACCTCAGGGTTTCAATGGTTTGGGCAATGCAAAGATATCATCTTTGGAGGATTTAATGATTGATTTTGTCAAAGAATCAAGGTCAAGGACTACCACATTAGAGAACTCGGTACAAACAATAGCAAGCACCGTACAAAGTCAAGGTAAGGCAATTCAAAGCTTGGAAGTTCAAATTAGTCAAATTGCCATCTCCATCCACACAATGCAAAAAGAGAAATGTCCAAGTTGCCTGGAAAAAAACCCTAAAGAGGAGTGCAAGGCTATCTCTCCAAAGTGGCAGGGAGTTGAACAAGCATGTGGAGATGGATGA
Coding sequence (CDS)
ATGAGATGGATGAGGAGGCCAAACTCAAGCAAGTCTGCCTTCTATAGCATCTCTAGCGGCAATGGCAAGTCAAAACGAGCAAGGTGGCTAGAGACGGCCAACTATGTAGATAGAGGACAATTTAGAGGCCAACAACAATATCTCACTCACTACCATCCCAACTTGAGGAATCATGAAATTTTCTCTTATGCTAACAACAAGAATGTGTTGCAAGCACCTCAGGGTTTCAATGGTTTGGGCAATGCAAAGATATCATCTTTGGAGGATTTAATGATTGATTTTGTCAAAGAATCAAGGTCAAGGACTACCACATTAGAGAACTCGGTACAAACAATAGCAAGCACCGTACAAAGTCAAGGTAAGGCAATTCAAAGCTTGGAAGTTCAAATTAGTCAAATTGCCATCTCCATCCACACAATGCAAAAAGAGAAATGTCCAAGTTGCCTGGAAAAAAACCCTAAAGAGGAGTGCAAGGCTATCTCTCCAAAGTGGCAGGGAGTTGAACAAGCATGTGGAGATGGATGA
Protein sequence
MRWMRRPNSSKSAFYSISSGNGKSKRARWLETANYVDRGQFRGQQQYLTHYHPNLRNHEIFSYANNKNVLQAPQGFNGLGNAKISSLEDLMIDFVKESRSRTTTLENSVQTIASTVQSQGKAIQSLEVQISQIAISIHTMQKEKCPSCLEKNPKEECKAISPKWQGVEQACGDG
Homology
BLAST of HG10017594 vs. NCBI nr
Match:
WP_217833153.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])
HSP 1 Score: 201.4 bits (511), Expect = 6.2e-48
Identity = 104/133 (78.20%), Postives = 115/133 (86.47%), Query Frame = 0
Query: 31 ETANYVDRGQFRG--QQQYLTHYHPNLRNHEIFSYANNKNVLQAPQGFNGLGNAKISSLE 90
ETANYVDRG +R QQ THYHPNLRNHE FSYANNKNVLQAPQGFNG GNAK SSLE
Sbjct: 330 ETANYVDRGHYRNYQHQQLPTHYHPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTSSLE 389
Query: 91 DLMIDFVKESRSRTTTLENSVQTIASTVQSQGKAIQSLEVQISQIAISIHTMQKEKCPSC 150
D+M+DFVKESRSRTTTLENSVQ IASTVQSQGKA+Q+LEVQ+SQ+ S+ TMQK K PSC
Sbjct: 390 DIMLDFVKESRSRTTTLENSVQAIASTVQSQGKALQNLEVQLSQMKTSLQTMQKGKFPSC 449
Query: 151 LEKNPKEECKAIS 162
E NP+EECKA++
Sbjct: 450 PEINPREECKAVT 462
BLAST of HG10017594 vs. NCBI nr
Match:
WP_217833148.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])
HSP 1 Score: 132.1 bits (331), Expect = 4.6e-27
Identity = 77/121 (63.64%), Postives = 87/121 (71.90%), Query Frame = 0
Query: 41 FRG--QQQYLTHYHPNLRNHEIFSYANNKNVLQAPQGFNGLG---NAKISSLEDLMIDFV 100
+RG QQ THYHPNLRNHE FSYANN+NVLQ P G + +G K S+LEDLMI+F+
Sbjct: 2 YRGHQHQQLPTHYHPNLRNHENFSYANNRNVLQGPPGLSNVGPSHTEKKSNLEDLMIEFI 61
Query: 101 KESRSRTTTLENSVQTIASTVQSQGKAIQSLEVQISQIAISIHTMQKEKCPSCLEKNPKE 157
KESR RTT LE STVQS GKAI ++EVQISQIA S+ TMQK K SC E NPKE
Sbjct: 62 KESRGRTTALE-------STVQSHGKAIHNIEVQISQIATSLQTMQKGKFSSCPEINPKE 115
BLAST of HG10017594 vs. NCBI nr
Match:
XP_022868533.1 (uncharacterized protein LOC111388104 [Olea europaea var. sylvestris])
HSP 1 Score: 109.0 bits (271), Expect = 4.2e-20
Identity = 64/146 (43.84%), Postives = 90/146 (61.64%), Query Frame = 0
Query: 16 SISSGNGKSKRARWLETANYVDRGQFRGQQQY-LTHYHPNLRNHEIFSYANNKNVLQAPQ 75
S SS + +++ A E A YV+R + ++ Y HYHP LRNHE SY NN+N LQ P
Sbjct: 222 STSSSHQETEVAN--EQAQYVNRRNYNQRESYQANHYHPGLRNHENLSYGNNRNTLQPPS 281
Query: 76 GFNGLGNAKISSLEDLMIDFVKESRSRTTTLENSVQTIASTVQSQGKAIQSLEVQISQIA 135
GFN + LED++ F+ E+RSR E+ + I + V + G +++LEVQISQ+A
Sbjct: 282 GFNTQNSDGKLPLEDILGTFISETRSRFNKDESRLDNIETHVSNMGATMKNLEVQISQLA 341
Query: 136 ISIHTMQKEKCPSCLEKNPKEECKAI 161
S+ + QK K PS +E NPKE CKA+
Sbjct: 342 TSMKSQQKGKFPSDIEINPKEHCKAV 365
BLAST of HG10017594 vs. NCBI nr
Match:
XP_022893883.1 (uncharacterized protein LOC111408348 [Olea europaea var. sylvestris])
HSP 1 Score: 107.8 bits (268), Expect = 9.3e-20
Identity = 59/137 (43.07%), Postives = 84/137 (61.31%), Query Frame = 0
Query: 24 SKRARWLETANYVDRGQFRGQQQYLTHYHPNLRNHEIFSYANNKNVLQAPQGFNGLGNAK 83
+++A+++ + NY RG ++ HYHP LRNHE SY NN+N LQ P GFN +
Sbjct: 94 NEQAQYVNSRNYNQRGSYQA-----NHYHPALRNHENLSYGNNRNTLQPPPGFNTQNSDG 153
Query: 84 ISSLEDLMIDFVKESRSRTTTLENSVQTIASTVQSQGKAIQSLEVQISQIAISIHTMQKE 143
LED++ F+ E+RSR E+ + I + V + G +++LEVQI Q+A SI + QK
Sbjct: 154 KPPLEDILGTFISETRSRFNKDESRLDNIETHVSNMGATMKNLEVQIDQLATSIKSQQKG 213
Query: 144 KCPSCLEKNPKEECKAI 161
K PS E NPKE CKA+
Sbjct: 214 KFPSDTEVNPKEHCKAV 225
BLAST of HG10017594 vs. NCBI nr
Match:
XP_022883717.1 (uncharacterized protein LOC111400543 [Olea europaea var. sylvestris])
HSP 1 Score: 107.5 bits (267), Expect = 1.2e-19
Identity = 58/137 (42.34%), Postives = 84/137 (61.31%), Query Frame = 0
Query: 24 SKRARWLETANYVDRGQFRGQQQYLTHYHPNLRNHEIFSYANNKNVLQAPQGFNGLGNAK 83
+++A+++ + NY RG ++ HYHP LRNHE SY NN+N LQ P GFN +
Sbjct: 199 NEQAQYVNSRNYTQRGSYQA-----NHYHPGLRNHENLSYGNNRNTLQPPPGFNTQNSDG 258
Query: 84 ISSLEDLMIDFVKESRSRTTTLENSVQTIASTVQSQGKAIQSLEVQISQIAISIHTMQKE 143
LED++ F+ E+RSR E+ + I + V + G +++LEVQI Q+A S+ + QK
Sbjct: 259 KPPLEDILGTFISETRSRFNKDESRLGKIETHVSNMGATMKNLEVQIGQLATSMKSQQKG 318
Query: 144 KCPSCLEKNPKEECKAI 161
K PS E NPKE CKA+
Sbjct: 319 KFPSDTEVNPKEHCKAV 330
BLAST of HG10017594 vs. ExPASy TrEMBL
Match:
A0A2P5BPI6 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_313500 PE=4 SV=1)
HSP 1 Score: 97.8 bits (242), Expect = 4.7e-17
Identity = 55/113 (48.67%), Postives = 70/113 (61.95%), Query Frame = 0
Query: 49 THYHPNLRNHEIFSYANNKNVLQAPQGFNGLGNAKISSLEDLMIDFVKESRSRTTTLENS 108
THY+P LRNHE FSY N +NVLQ P GFN + K SSLEDL+ F+ E+R + E
Sbjct: 7 THYYPGLRNHENFSYGNTRNVLQPPPGFNPPVSEKKSSLEDLLSTFIVETRRKFNKDEAR 66
Query: 109 VQTIASTVQSQGKAIQSLEVQISQIAISIHTMQKEKCPSCLEKNPKEECKAIS 162
+ I + + ++SLEVQI Q+A SI Q K PS E NPK+ CKAI+
Sbjct: 67 LDNIETHCNNMNATMKSLEVQIGQLANSIKGQQSGKFPSDTETNPKDHCKAIT 119
BLAST of HG10017594 vs. ExPASy TrEMBL
Match:
A0A2I4FP56 (uncharacterized protein LOC109000837 OS=Juglans regia OX=51240 GN=LOC109000837 PE=4 SV=1)
HSP 1 Score: 93.6 bits (231), Expect = 8.8e-16
Identity = 56/148 (37.84%), Postives = 83/148 (56.08%), Query Frame = 0
Query: 16 SISSGNGKSKRARWLETANYVDRGQFRGQQQYLTHYHPNLRNHEIFSYANNKNVL--QAP 75
+I S ++ +++ NY RG H+HP LRNHE SY N KNVL Q P
Sbjct: 154 TIPSNEASQEQVQYINNQNYNYRG-----NPMPNHFHPGLRNHENLSYGNTKNVLQPQPP 213
Query: 76 QGFNGLGNAKISSLEDLMIDFVKESRSRTTTLENSVQTIASTVQSQGKAIQSLEVQISQI 135
GFN + K SLE+ MI FV+E+ ++ ++ + I + + AI+++EVQI Q+
Sbjct: 214 SGFNSQSSKKKMSLENAMISFVEETNAKFKETDSQLDNIETHCSNMRAAIKNIEVQIGQL 273
Query: 136 AISIHTMQKEKCPSCLEKNPKEECKAIS 162
A +I+ Q+E PS E NP E+ KAI+
Sbjct: 274 ATTINAQQRETFPSNTEVNPNEQSKAIT 296
BLAST of HG10017594 vs. ExPASy TrEMBL
Match:
A0A6P9DWY0 (uncharacterized protein LOC118344026 OS=Juglans regia OX=51240 GN=LOC118344026 PE=4 SV=1)
HSP 1 Score: 93.6 bits (231), Expect = 8.8e-16
Identity = 54/146 (36.99%), Postives = 83/146 (56.85%), Query Frame = 0
Query: 16 SISSGNGKSKRARWLETANYVDRGQFRGQQQYLTHYHPNLRNHEIFSYANNKNVLQAPQG 75
++ S ++ +++ NY RG +YH LRNHE SY N KNVLQ G
Sbjct: 119 TVPSNEASQEQVQYINNRNYNYRG-----NPMPNYYHLGLRNHENLSYKNTKNVLQPHPG 178
Query: 76 FNGLGNAKISSLEDLMIDFVKESRSRTTTLENSVQTIASTVQSQGKAIQSLEVQISQIAI 135
F+ + K SLED M+ FV+E+ +R ++ + I + + G AI+++EVQI Q+A
Sbjct: 179 FDSQPSEKKISLEDAMVSFVEETNTRFKKTDSRLDNIETHCSNMGAAIKNIEVQIGQLAT 238
Query: 136 SIHTMQKEKCPSCLEKNPKEECKAIS 162
+I+ Q+ PS E NP+E+CKAI+
Sbjct: 239 TINAQQRGTFPSNTEVNPREQCKAIT 259
BLAST of HG10017594 vs. ExPASy TrEMBL
Match:
A0A2P5A3N0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_372170 PE=4 SV=1)
HSP 1 Score: 92.4 bits (228), Expect = 2.0e-15
Identity = 53/113 (46.90%), Postives = 66/113 (58.41%), Query Frame = 0
Query: 49 THYHPNLRNHEIFSYANNKNVLQAPQGFNGLGNAKISSLEDLMIDFVKESRSRTTTLENS 108
THYH RNHE FSYANNKNVLQ P G N K SLED++ F+ E+R R E
Sbjct: 7 THYHLGFRNHENFSYANNKNVLQPPPGLNQPVEEKKPSLEDILSTFIMETRGRFNKDEAL 66
Query: 109 VQTIASTVQSQGKAIQSLEVQISQIAISIHTMQKEKCPSCLEKNPKEECKAIS 162
+ I + + ++SLEVQI ++A SI K PS E NPK+ CKAI+
Sbjct: 67 LDNIETHCNNMNATMKSLEVQIGELANSIKGQISRKFPSDTETNPKDHCKAIT 119
BLAST of HG10017594 vs. ExPASy TrEMBL
Match:
A0A2P5AMA4 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_346970 PE=4 SV=1)
HSP 1 Score: 92.4 bits (228), Expect = 2.0e-15
Identity = 59/146 (40.41%), Postives = 79/146 (54.11%), Query Frame = 0
Query: 16 SISSGNGKSKRARWLETANYVDRGQFRGQQQYLTHYHPNLRNHEIFSYANNKNVLQAPQG 75
S + G ++ +L N+ RG THYHP LRNHE FSYANN+NVLQ P G
Sbjct: 61 SFGNDGGDLEQVNYLNNWNFNYRGN-NMSNNLPTHYHPVLRNHENFSYANNRNVLQPPLG 120
Query: 76 FNGLGNAKISSLEDLMIDFVKESRSRTTTLENSVQTIASTVQSQGKAIQSLEVQISQIAI 135
FN K SL+D++ F+ E++ R E + I + + ++SLEVQI Q+A
Sbjct: 121 FNQPVAEKKPSLKDILSTFIMETKGRFNKDEARIDNIETHCNNINATMKSLEVQIRQLAN 180
Query: 136 SIHTMQKEKCPSCLEKNPKEECKAIS 162
SI K PS E NPK+ CK I+
Sbjct: 181 SIKGQIFRKFPSDTETNPKDHCKTIT 205
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
WP_217833153.1 | 6.2e-48 | 78.20 | retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... | [more] |
WP_217833148.1 | 4.6e-27 | 63.64 | hypothetical protein, partial [Synechococcus sp. PCC 7002] | [more] |
XP_022868533.1 | 4.2e-20 | 43.84 | uncharacterized protein LOC111388104 [Olea europaea var. sylvestris] | [more] |
XP_022893883.1 | 9.3e-20 | 43.07 | uncharacterized protein LOC111408348 [Olea europaea var. sylvestris] | [more] |
XP_022883717.1 | 1.2e-19 | 42.34 | uncharacterized protein LOC111400543 [Olea europaea var. sylvestris] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A2P5BPI6 | 4.7e-17 | 48.67 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_313500 PE=4 SV... | [more] |
A0A2I4FP56 | 8.8e-16 | 37.84 | uncharacterized protein LOC109000837 OS=Juglans regia OX=51240 GN=LOC109000837 P... | [more] |
A0A6P9DWY0 | 8.8e-16 | 36.99 | uncharacterized protein LOC118344026 OS=Juglans regia OX=51240 GN=LOC118344026 P... | [more] |
A0A2P5A3N0 | 2.0e-15 | 46.90 | Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_372170 PE... | [more] |
A0A2P5AMA4 | 2.0e-15 | 40.41 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_346970 PE=4 SV... | [more] |
Match Name | E-value | Identity | Description | |